vmtk 1.5.0b0__tar.gz

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  1. vmtk-1.5.0b0/CMake/CMakeLists.txt +27 -0
  2. vmtk-1.5.0b0/CMake/CMakeOptions.cmake +135 -0
  3. vmtk-1.5.0b0/CMake/VMTKConfig.cmake.in +32 -0
  4. vmtk-1.5.0b0/CMake/VMTKUse.cmake.in +9 -0
  5. vmtk-1.5.0b0/CMake/vmtkFunctions.cmake +103 -0
  6. vmtk-1.5.0b0/CMakeLists.txt +463 -0
  7. vmtk-1.5.0b0/LICENSE +867 -0
  8. vmtk-1.5.0b0/MANIFEST.in +26 -0
  9. vmtk-1.5.0b0/PKG-INFO +307 -0
  10. vmtk-1.5.0b0/PypeS/CMakeLists.txt +58 -0
  11. vmtk-1.5.0b0/PypeS/__init__.py +0 -0
  12. vmtk-1.5.0b0/PypeS/pype.py +353 -0
  13. vmtk-1.5.0b0/PypeS/pypebatch.py +111 -0
  14. vmtk-1.5.0b0/PypeS/pypemain.py +116 -0
  15. vmtk-1.5.0b0/PypeS/pypepad.py +608 -0
  16. vmtk-1.5.0b0/PypeS/pyperun.py +49 -0
  17. vmtk-1.5.0b0/PypeS/pypes.py +12 -0
  18. vmtk-1.5.0b0/PypeS/pypescript.py +691 -0
  19. vmtk-1.5.0b0/PypeS/pypeserver.py +87 -0
  20. vmtk-1.5.0b0/PypeS/pypetest.py +92 -0
  21. vmtk-1.5.0b0/PypeS/pypetestrunner.py +202 -0
  22. vmtk-1.5.0b0/PypeS/pypewrapper.py +239 -0
  23. vmtk-1.5.0b0/README.md +269 -0
  24. vmtk-1.5.0b0/SuperBuild.cmake +278 -0
  25. vmtk-1.5.0b0/__init__.py.in +1 -0
  26. vmtk-1.5.0b0/distribution/pypi/README.md +140 -0
  27. vmtk-1.5.0b0/distribution/pypi/package_init.py +29 -0
  28. vmtk-1.5.0b0/distribution/pypi/test_wheel.py +106 -0
  29. vmtk-1.5.0b0/pyproject.toml +9 -0
  30. vmtk-1.5.0b0/setup.cfg +4 -0
  31. vmtk-1.5.0b0/setup.py +400 -0
  32. vmtk-1.5.0b0/vmtk/.keep +0 -0
  33. vmtk-1.5.0b0/vmtk.egg-info/PKG-INFO +307 -0
  34. vmtk-1.5.0b0/vmtk.egg-info/SOURCES.txt +707 -0
  35. vmtk-1.5.0b0/vmtk.egg-info/dependency_links.txt +1 -0
  36. vmtk-1.5.0b0/vmtk.egg-info/entry_points.txt +2 -0
  37. vmtk-1.5.0b0/vmtk.egg-info/requires.txt +6 -0
  38. vmtk-1.5.0b0/vmtk.egg-info/top_level.txt +1 -0
  39. vmtk-1.5.0b0/vmtk.py +105 -0
  40. vmtk-1.5.0b0/vmtkScripts/CMakeLists.txt +194 -0
  41. vmtk-1.5.0b0/vmtkScripts/__init__.py +0 -0
  42. vmtk-1.5.0b0/vmtkScripts/contrib/CMakeLists.txt +70 -0
  43. vmtk-1.5.0b0/vmtkScripts/contrib/__init__.py +0 -0
  44. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkboundarylayer2.py +137 -0
  45. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkcenterlinestonumpy.py +114 -0
  46. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkcontribscripts.py +36 -0
  47. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkdijkstradistancetopoints.py +299 -0
  48. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkdistancetospheres.py +365 -0
  49. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkendpointsections.py +161 -0
  50. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkentityrenumber.py +87 -0
  51. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkgeodesicsurfaceresolution.py +343 -0
  52. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkimagetonumpy.py +86 -0
  53. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshaddexternallayer.py +256 -0
  54. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshclipcenterlines.py +649 -0
  55. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshmerge.py +73 -0
  56. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshtetrahedralize2.py +68 -0
  57. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshtonumpy.py +144 -0
  58. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshviewer2.py +293 -0
  59. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkmeshwriter2.py +361 -0
  60. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpyreader.py +126 -0
  61. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpytocenterlines.py +83 -0
  62. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpytoimage.py +94 -0
  63. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpytomesh.py +122 -0
  64. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpytosurface.py +145 -0
  65. vmtk-1.5.0b0/vmtkScripts/contrib/vmtknumpywriter.py +155 -0
  66. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkpetergeneratesurface.py +259 -0
  67. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkpeterresurface.py +232 -0
  68. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkpetersurfaceclipper.py +338 -0
  69. vmtk-1.5.0b0/vmtkScripts/contrib/vmtksurfaceextractannularwalls.py +135 -0
  70. vmtk-1.5.0b0/vmtkScripts/contrib/vmtksurfaceextractinnercylinder.py +128 -0
  71. vmtk-1.5.0b0/vmtkScripts/contrib/vmtksurfaceresolution.py +335 -0
  72. vmtk-1.5.0b0/vmtkScripts/contrib/vmtksurfacetonumpy.py +126 -0
  73. vmtk-1.5.0b0/vmtkScripts/contrib/vmtksurfacewriter2.py +227 -0
  74. vmtk-1.5.0b0/vmtkScripts/contrib/vmtkthreshold.py +73 -0
  75. vmtk-1.5.0b0/vmtkScripts/resources/CMakeLists.txt +9 -0
  76. vmtk-1.5.0b0/vmtkScripts/resources/vmtkimagevolumeviewerpresets.xml +27 -0
  77. vmtk-1.5.0b0/vmtkScripts/vmtkactivetubes.py +92 -0
  78. vmtk-1.5.0b0/vmtkScripts/vmtkbifurcationprofiles.py +94 -0
  79. vmtk-1.5.0b0/vmtkScripts/vmtkbifurcationreferencesystems.py +77 -0
  80. vmtk-1.5.0b0/vmtkScripts/vmtkbifurcationsections.py +153 -0
  81. vmtk-1.5.0b0/vmtkScripts/vmtkbifurcationvectors.py +120 -0
  82. vmtk-1.5.0b0/vmtkScripts/vmtkboundarylayer.py +127 -0
  83. vmtk-1.5.0b0/vmtkScripts/vmtkboundaryreferencesystems.py +75 -0
  84. vmtk-1.5.0b0/vmtkScripts/vmtkbranchclipper.py +154 -0
  85. vmtk-1.5.0b0/vmtkScripts/vmtkbranchextractor.py +78 -0
  86. vmtk-1.5.0b0/vmtkScripts/vmtkbranchgeometry.py +96 -0
  87. vmtk-1.5.0b0/vmtkScripts/vmtkbranchmapping.py +128 -0
  88. vmtk-1.5.0b0/vmtkScripts/vmtkbranchmetrics.py +120 -0
  89. vmtk-1.5.0b0/vmtkScripts/vmtkbranchpatching.py +103 -0
  90. vmtk-1.5.0b0/vmtkScripts/vmtkbranchsections.py +117 -0
  91. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineattributes.py +66 -0
  92. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinegeometry.py +96 -0
  93. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineimage.py +118 -0
  94. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineinterpolation.py +123 -0
  95. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinelabeler.py +149 -0
  96. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinemerge.py +80 -0
  97. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinemeshsections.py +104 -0
  98. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinemodeller.py +78 -0
  99. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineoffsetattributes.py +151 -0
  100. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineresampling.py +62 -0
  101. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlines.py +689 -0
  102. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinesections.py +87 -0
  103. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinesmoothing.py +64 -0
  104. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlinesnetwork.py +303 -0
  105. vmtk-1.5.0b0/vmtkScripts/vmtkcenterlineviewer.py +175 -0
  106. vmtk-1.5.0b0/vmtkScripts/vmtkdelaunayvoronoi.py +256 -0
  107. vmtk-1.5.0b0/vmtkScripts/vmtkdistancetocenterlines.py +129 -0
  108. vmtk-1.5.0b0/vmtkScripts/vmtkendpointextractor.py +85 -0
  109. vmtk-1.5.0b0/vmtkScripts/vmtkflowextensions.py +193 -0
  110. vmtk-1.5.0b0/vmtkScripts/vmtkicpregistration.py +140 -0
  111. vmtk-1.5.0b0/vmtkScripts/vmtkimagebinarize.py +69 -0
  112. vmtk-1.5.0b0/vmtkScripts/vmtkimagecast.py +88 -0
  113. vmtk-1.5.0b0/vmtkScripts/vmtkimagecompare.py +102 -0
  114. vmtk-1.5.0b0/vmtkScripts/vmtkimagecompose.py +84 -0
  115. vmtk-1.5.0b0/vmtkScripts/vmtkimagecurvedmpr.py +84 -0
  116. vmtk-1.5.0b0/vmtkScripts/vmtkimagefeaturecorrection.py +85 -0
  117. vmtk-1.5.0b0/vmtkScripts/vmtkimagefeatures.py +204 -0
  118. vmtk-1.5.0b0/vmtkScripts/vmtkimageinitialization.py +636 -0
  119. vmtk-1.5.0b0/vmtkScripts/vmtkimagemipviewer.py +135 -0
  120. vmtk-1.5.0b0/vmtkScripts/vmtkimagemorphology.py +77 -0
  121. vmtk-1.5.0b0/vmtkScripts/vmtkimagenormalize.py +62 -0
  122. vmtk-1.5.0b0/vmtkScripts/vmtkimageobjectenhancement.py +100 -0
  123. vmtk-1.5.0b0/vmtkScripts/vmtkimageotsuthresholds.py +80 -0
  124. vmtk-1.5.0b0/vmtkScripts/vmtkimagereader.py +318 -0
  125. vmtk-1.5.0b0/vmtkScripts/vmtkimagereslice.py +149 -0
  126. vmtk-1.5.0b0/vmtkScripts/vmtkimageseeder.py +208 -0
  127. vmtk-1.5.0b0/vmtkScripts/vmtkimageshiftscale.py +123 -0
  128. vmtk-1.5.0b0/vmtkScripts/vmtkimagesmoothing.py +124 -0
  129. vmtk-1.5.0b0/vmtkScripts/vmtkimagevesselenhancement.py +213 -0
  130. vmtk-1.5.0b0/vmtkScripts/vmtkimageviewer.py +184 -0
  131. vmtk-1.5.0b0/vmtkScripts/vmtkimagevoipainter.py +245 -0
  132. vmtk-1.5.0b0/vmtkScripts/vmtkimagevoiselector.py +232 -0
  133. vmtk-1.5.0b0/vmtkScripts/vmtkimagevolumeviewer.py +323 -0
  134. vmtk-1.5.0b0/vmtkScripts/vmtkimagewriter.py +311 -0
  135. vmtk-1.5.0b0/vmtkScripts/vmtklevelsetsegmentation.py +390 -0
  136. vmtk-1.5.0b0/vmtkScripts/vmtklineartoquadratic.py +107 -0
  137. vmtk-1.5.0b0/vmtkScripts/vmtklineresampling.py +68 -0
  138. vmtk-1.5.0b0/vmtkScripts/vmtklocalgeometry.py +182 -0
  139. vmtk-1.5.0b0/vmtkScripts/vmtkmarchingcubes.py +79 -0
  140. vmtk-1.5.0b0/vmtkScripts/vmtkmesharrayoperation.py +102 -0
  141. vmtk-1.5.0b0/vmtkScripts/vmtkmeshboundaryinspector.py +168 -0
  142. vmtk-1.5.0b0/vmtkScripts/vmtkmeshbranchclipper.py +154 -0
  143. vmtk-1.5.0b0/vmtkScripts/vmtkmeshclipper.py +161 -0
  144. vmtk-1.5.0b0/vmtkScripts/vmtkmeshcompare.py +152 -0
  145. vmtk-1.5.0b0/vmtkScripts/vmtkmeshconnectivity.py +85 -0
  146. vmtk-1.5.0b0/vmtkScripts/vmtkmeshcutter.py +131 -0
  147. vmtk-1.5.0b0/vmtkScripts/vmtkmeshdatareader.py +351 -0
  148. vmtk-1.5.0b0/vmtkScripts/vmtkmeshextractpointdata.py +83 -0
  149. vmtk-1.5.0b0/vmtkScripts/vmtkmeshgenerator.py +366 -0
  150. vmtk-1.5.0b0/vmtkScripts/vmtkmeshlambda2.py +72 -0
  151. vmtk-1.5.0b0/vmtkScripts/vmtkmeshlinearize.py +60 -0
  152. vmtk-1.5.0b0/vmtkScripts/vmtkmeshmergetimesteps.py +210 -0
  153. vmtk-1.5.0b0/vmtkScripts/vmtkmeshpolyballevaluation.py +82 -0
  154. vmtk-1.5.0b0/vmtkScripts/vmtkmeshprojection.py +65 -0
  155. vmtk-1.5.0b0/vmtkScripts/vmtkmeshreader.py +339 -0
  156. vmtk-1.5.0b0/vmtkScripts/vmtkmeshscaling.py +62 -0
  157. vmtk-1.5.0b0/vmtkScripts/vmtkmeshtetrahedralize.py +60 -0
  158. vmtk-1.5.0b0/vmtkScripts/vmtkmeshtosurface.py +64 -0
  159. vmtk-1.5.0b0/vmtkScripts/vmtkmeshtransform.py +97 -0
  160. vmtk-1.5.0b0/vmtkScripts/vmtkmeshtransformtoras.py +67 -0
  161. vmtk-1.5.0b0/vmtkScripts/vmtkmeshvectorfromcomponents.py +72 -0
  162. vmtk-1.5.0b0/vmtkScripts/vmtkmeshviewer.py +202 -0
  163. vmtk-1.5.0b0/vmtkScripts/vmtkmeshvolume.py +69 -0
  164. vmtk-1.5.0b0/vmtkScripts/vmtkmeshvorticityhelicity.py +79 -0
  165. vmtk-1.5.0b0/vmtkScripts/vmtkmeshwallshearrate.py +79 -0
  166. vmtk-1.5.0b0/vmtkScripts/vmtkmeshwriter.py +381 -0
  167. vmtk-1.5.0b0/vmtkScripts/vmtknetworkeditor.py +893 -0
  168. vmtk-1.5.0b0/vmtkScripts/vmtknetworkextraction.py +81 -0
  169. vmtk-1.5.0b0/vmtkScripts/vmtknetworkwriter.py +249 -0
  170. vmtk-1.5.0b0/vmtkScripts/vmtkparticletracer.py +190 -0
  171. vmtk-1.5.0b0/vmtkScripts/vmtkpathlineanimator.py +268 -0
  172. vmtk-1.5.0b0/vmtkScripts/vmtkpointsplitextractor.py +88 -0
  173. vmtk-1.5.0b0/vmtkScripts/vmtkpointtransform.py +71 -0
  174. vmtk-1.5.0b0/vmtkScripts/vmtkpolyballmodeller.py +78 -0
  175. vmtk-1.5.0b0/vmtkScripts/vmtkpotentialfit.py +99 -0
  176. vmtk-1.5.0b0/vmtkScripts/vmtkpythonscript.py +69 -0
  177. vmtk-1.5.0b0/vmtkScripts/vmtkrbfinterpolation.py +99 -0
  178. vmtk-1.5.0b0/vmtkScripts/vmtkrenderer.py +376 -0
  179. vmtk-1.5.0b0/vmtkScripts/vmtkrendertoimage.py +61 -0
  180. vmtk-1.5.0b0/vmtkScripts/vmtkscripts.py +158 -0
  181. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceappend.py +58 -0
  182. vmtk-1.5.0b0/vmtkScripts/vmtksurfacearrayoperation.py +104 -0
  183. vmtk-1.5.0b0/vmtkScripts/vmtksurfacearraysmoothing.py +134 -0
  184. vmtk-1.5.0b0/vmtkScripts/vmtksurfacebooleanoperation.py +85 -0
  185. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecapper.py +209 -0
  186. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecelldatatopointdata.py +57 -0
  187. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecenterlineprojection.py +69 -0
  188. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecliploop.py +137 -0
  189. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceclipper.py +213 -0
  190. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecompare.py +146 -0
  191. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceconnectivity.py +111 -0
  192. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceconnectivityselector.py +231 -0
  193. vmtk-1.5.0b0/vmtkScripts/vmtksurfacecurvature.py +153 -0
  194. vmtk-1.5.0b0/vmtkScripts/vmtksurfacedecimation.py +76 -0
  195. vmtk-1.5.0b0/vmtkScripts/vmtksurfacedistance.py +93 -0
  196. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceendclipper.py +350 -0
  197. vmtk-1.5.0b0/vmtkScripts/vmtksurfacekiteremoval.py +60 -0
  198. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceloopextraction.py +147 -0
  199. vmtk-1.5.0b0/vmtkScripts/vmtksurfacemassproperties.py +72 -0
  200. vmtk-1.5.0b0/vmtkScripts/vmtksurfacemodeller.py +69 -0
  201. vmtk-1.5.0b0/vmtkScripts/vmtksurfacenormals.py +85 -0
  202. vmtk-1.5.0b0/vmtkScripts/vmtksurfacepointdatatocelldata.py +57 -0
  203. vmtk-1.5.0b0/vmtkScripts/vmtksurfacepolyballevaluation.py +82 -0
  204. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceprojection.py +62 -0
  205. vmtk-1.5.0b0/vmtkScripts/vmtksurfacereader.py +252 -0
  206. vmtk-1.5.0b0/vmtkScripts/vmtksurfacereferencesystemtransform.py +140 -0
  207. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceregiondrawing.py +175 -0
  208. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceremeshing.py +154 -0
  209. vmtk-1.5.0b0/vmtkScripts/vmtksurfacescaling.py +72 -0
  210. vmtk-1.5.0b0/vmtkScripts/vmtksurfacesmoothing.py +92 -0
  211. vmtk-1.5.0b0/vmtkScripts/vmtksurfacesubdivision.py +70 -0
  212. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetobinaryimage.py +122 -0
  213. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetomesh.py +65 -0
  214. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetransform.py +97 -0
  215. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetransforminteractive.py +194 -0
  216. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetransformtoras.py +72 -0
  217. vmtk-1.5.0b0/vmtkScripts/vmtksurfacetriangle.py +60 -0
  218. vmtk-1.5.0b0/vmtkScripts/vmtksurfaceviewer.py +362 -0
  219. vmtk-1.5.0b0/vmtkScripts/vmtksurfacewriter.py +276 -0
  220. vmtk-1.5.0b0/vmtkScripts/vmtksurfmesh.py +59 -0
  221. vmtk-1.5.0b0/vmtkScripts/vmtktetgen.py +158 -0
  222. vmtk-1.5.0b0/vmtkScripts/vmtktetringenerator.py +687 -0
  223. vmtk-1.5.0b0/vmtk_env.sh.in +7 -0
  224. vmtk-1.5.0b0/vmtk_startup.bat.in +11 -0
  225. vmtk-1.5.0b0/vtkVmtk/CMakeLists.txt +106 -0
  226. vmtk-1.5.0b0/vtkVmtk/Common/CMakeLists.txt +26 -0
  227. vmtk-1.5.0b0/vtkVmtk/Common/vtkvmtkConstants.h +84 -0
  228. vmtk-1.5.0b0/vtkVmtk/Common/vtkvmtkMath.cxx +232 -0
  229. vmtk-1.5.0b0/vtkVmtk/Common/vtkvmtkMath.h +142 -0
  230. vmtk-1.5.0b0/vtkVmtk/Common/vtkvmtkWin32Header.h +178 -0
  231. vmtk-1.5.0b0/vtkVmtk/ComputationalGeometry/CMakeLists.txt +81 -0
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  581. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkAnisotropicDiffusionImageFilter.cxx +225 -0
  582. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkAnisotropicDiffusionImageFilter.h +106 -0
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  584. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkBoundedReciprocalImageFilter.h +73 -0
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  589. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkConstrainedLaplacianPolyDataFilter.cxx +209 -0
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  591. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkCurvesLevelSetImageFilter.cxx +114 -0
  592. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkCurvesLevelSetImageFilter.h +224 -0
  593. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkDanielssonDistanceMapImageFilter.cxx +59 -0
  594. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkDanielssonDistanceMapImageFilter.h +87 -0
  595. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkFWHMFeatureImageFilter.cxx +77 -0
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  597. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkFastMarchingDirectionalFreezeImageFilter.cxx +125 -0
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  601. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSet2DImageFilter.cxx +111 -0
  602. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSet2DImageFilter.h +216 -0
  603. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSetImageFilter.cxx +114 -0
  604. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSetImageFilter.h +219 -0
  605. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeImageFilter.cxx +50 -0
  606. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeImageFilter.h +62 -0
  607. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussian2DImageFilter.cxx +59 -0
  608. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussian2DImageFilter.h +80 -0
  609. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussianImageFilter.cxx +59 -0
  610. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussianImageFilter.h +81 -0
  611. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGrayscaleMorphologyImageFilter.cxx +155 -0
  612. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkGrayscaleMorphologyImageFilter.h +113 -0
  613. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkITKFilterUtilities.h +297 -0
  614. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkLaplacianSegmentationLevelSetImageFilter.cxx +111 -0
  615. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkLaplacianSegmentationLevelSetImageFilter.h +214 -0
  616. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkMedialCurveFilter.cxx +131 -0
  617. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkMedialCurveFilter.h +84 -0
  618. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkNormalizeImageFilter.cxx +65 -0
  619. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkNormalizeImageFilter.h +64 -0
  620. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkObjectnessMeasureImageFilter.cxx +112 -0
  621. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkObjectnessMeasureImageFilter.h +191 -0
  622. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkOtsuMultipleThresholdsImageFilter.cxx +110 -0
  623. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkOtsuMultipleThresholdsImageFilter.h +104 -0
  624. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkPolyDataPotentialFit.cxx +640 -0
  625. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkPolyDataPotentialFit.h +289 -0
  626. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkRecursiveGaussian2DImageFilter.cxx +63 -0
  627. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkRecursiveGaussian2DImageFilter.h +86 -0
  628. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkRecursiveGaussianImageFilter.cxx +63 -0
  629. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkRecursiveGaussianImageFilter.h +86 -0
  630. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkSatoVesselnessMeasureImageFilter.cxx +89 -0
  631. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkSatoVesselnessMeasureImageFilter.h +155 -0
  632. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkSigmoidImageFilter.cxx +64 -0
  633. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkSigmoidImageFilter.h +108 -0
  634. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkThresholdSegmentationLevelSetImageFilter.cxx +121 -0
  635. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkThresholdSegmentationLevelSetImageFilter.h +277 -0
  636. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkUpwindGradientMagnitudeImageFilter.cxx +62 -0
  637. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkUpwindGradientMagnitudeImageFilter.h +81 -0
  638. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusion3DImageFilter.cxx +32 -0
  639. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusion3DImageFilter.h +294 -0
  640. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusionImageFilter.cxx +99 -0
  641. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusionImageFilter.h +229 -0
  642. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselnessMeasureImageFilter.cxx +112 -0
  643. vmtk-1.5.0b0/vtkVmtk/Segmentation/vtkvmtkVesselnessMeasureImageFilter.h +191 -0
  644. vmtk-1.5.0b0/vtkVmtk/Utilities/CMakeLists.txt +15 -0
  645. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/CMakeLists.txt +41 -0
  646. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/DoxygenLayout.xml +269 -0
  647. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/doc_mainpage.dox +107 -0
  648. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/doxyfile.in +164 -0
  649. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/doxygen.css +1012 -0
  650. vmtk-1.5.0b0/vtkVmtk/Utilities/Doxygen/migrate_to_native_doxygen.pl +143 -0
  651. vmtk-1.5.0b0/vtkVmtk/Utilities/OpenNL/CMakeLists.txt +26 -0
  652. vmtk-1.5.0b0/vtkVmtk/Utilities/OpenNL/nl.h +277 -0
  653. vmtk-1.5.0b0/vtkVmtk/Utilities/OpenNL/nl_single_file.c +4361 -0
  654. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/CMakeLists.txt +25 -0
  655. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/EXAMPLE_CONFIG +154 -0
  656. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/house2.ele +1391 -0
  657. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/house2.node +402 -0
  658. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/makefile +76 -0
  659. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/meshconvert.py +904 -0
  660. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/Starbase.c +15261 -0
  661. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/Starbase.h +512 -0
  662. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/Stellar.c +19 -0
  663. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/anisotropy.c +459 -0
  664. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/arraypoolstack.c +959 -0
  665. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/classify.c +481 -0
  666. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/improve.c +670 -0
  667. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/insertion.c +3239 -0
  668. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/interact.c +312 -0
  669. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/journal.c +1087 -0
  670. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/main.c +55 -0
  671. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/output.c +652 -0
  672. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/print.c +485 -0
  673. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/quadric.c +590 -0
  674. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/quality.c +2560 -0
  675. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/showme.c +7241 -0
  676. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/size.c +801 -0
  677. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/smoothing.c +2483 -0
  678. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/top.c +1413 -0
  679. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/topological.c +3505 -0
  680. vmtk-1.5.0b0/vtkVmtk/Utilities/Stellar_1.0/src/vector.c +110 -0
  681. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/CMakeLists.txt +20 -0
  682. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/LICENSE +66 -0
  683. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/README +16 -0
  684. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/example.poly +132 -0
  685. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/makefile +71 -0
  686. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/predicates.cxx +4187 -0
  687. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/tetgen.cxx +34484 -0
  688. vmtk-1.5.0b0/vtkVmtk/Utilities/tetgen1.4.3/tetgen.h +3377 -0
  689. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/CMakeLists.txt +44 -0
  690. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkITKUtility.h +126 -0
  691. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITK.h +18 -0
  692. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.cxx +1455 -0
  693. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.h +889 -0
  694. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.cxx +221 -0
  695. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.h +46 -0
  696. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKConfig.cmake.in +6 -0
  697. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKConfigure.h.in +20 -0
  698. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.cxx +520 -0
  699. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.h +96 -0
  700. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKUtility.h +144 -0
  701. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKVersion.cxx +31 -0
  702. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKVersion.h +65 -0
  703. vmtk-1.5.0b0/vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKWin32Header.h +31 -0
  704. vmtk-1.5.0b0/vtkVmtk/Wrapping/JavaDependencies.cmake.in +5 -0
  705. vmtk-1.5.0b0/vtkVmtk/Wrapping/hints +0 -0
  706. vmtk-1.5.0b0/vtkVmtk/Wrapping/vtkWrapperInit.data.in +1 -0
  707. vmtk-1.5.0b0/vtkVmtk/__init__.py +0 -0
  708. vmtk-1.5.0b0/vtkVmtk/vtkvmtk.py +23 -0
  709. vmtk-1.5.0b0/vtkVmtk/vtkvmtkConfigure.h.in +15 -0
@@ -0,0 +1,27 @@
1
+ set(vtkAddon_version "cf1126568415179fb5b1c16121087bd2494e2e0e")
2
+
3
+ set(vtkMacroKitPythonWrap.cmake_expected_hash "82abf4ea2c6f153c61dd47bf6f3baf924d0f54dd11fd92a09cb5dc0f82a85e48")
4
+ set(vtkWrapHierarchy.cmake_expected_hash "c9343c54675e8bbde8ceaedf99a3226546b5f7d4cf7d5dac3e33db9093b536f2")
5
+ set(vtkWrapPython.cmake_expected_hash "ac22023ff10c58da33c2a6633fc90fde9863f12bb0f90dd0da51e18796137db3")
6
+ set(vtkWrapperInit.data.in_expected_hash "3e840679603eb4a0d425c1244828729cb271f33a081c5ac2e0547aa747bbec5d")
7
+
8
+ foreach(filename IN ITEMS
9
+ vtkMacroKitPythonWrap.cmake
10
+ vtkWrapHierarchy.cmake
11
+ vtkWrapPython.cmake
12
+ vtkWrapperInit.data.in
13
+ )
14
+ set(dest_file "${CMAKE_CURRENT_BINARY_DIR}/${filename}")
15
+ set(expected_hash "${${filename}_expected_hash}")
16
+ set(url "https://raw.githubusercontent.com/Slicer/vtkAddon/${vtkAddon_version}/CMake/${filename}")
17
+ if(NOT EXISTS ${dest_file})
18
+ file(DOWNLOAD ${url} ${dest_file} EXPECTED_HASH SHA256=${expected_hash})
19
+ else()
20
+ file(SHA256 ${dest_file} current_hash)
21
+ if(NOT ${current_hash} STREQUAL ${expected_hash})
22
+ file(DOWNLOAD ${url} ${dest_file} EXPECTED_HASH SHA256=${expected_hash})
23
+ endif()
24
+ endif()
25
+ endforeach()
26
+
27
+ set(vtkAddon_CMAKE_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE PATH "Path to vtkAddon CMake directory")
@@ -0,0 +1,135 @@
1
+ #
2
+ # Configure output paths for libraries and executables.
3
+ #
4
+ set(LIBRARY_OUTPUT_PATH ${VTK_VMTK_BINARY_DIR}/bin CACHE PATH
5
+ "Single output directory for building all libraries.")
6
+ set(EXECUTABLE_OUTPUT_PATH ${VTK_VMTK_BINARY_DIR}/bin CACHE PATH
7
+ "Single output directory for building all executables.")
8
+ mark_as_advanced(LIBRARY_OUTPUT_PATH EXECUTABLE_OUTPUT_PATH)
9
+
10
+ #
11
+ # Try to find VTK and include its settings (otherwise complain)
12
+ #
13
+ if ( NOT VTK_FOUND )
14
+ find_package(VTK REQUIRED)
15
+ include(${VTK_USE_FILE})
16
+ endif ()
17
+
18
+ #
19
+ # Try to find ITK and include its settings (otherwise complain)
20
+ #
21
+ if ( NOT ITK_FOUND )
22
+ find_package(ITK REQUIRED)
23
+ include(${ITK_USE_FILE})
24
+ endif ()
25
+
26
+ #
27
+ # Build shared libs ?
28
+ #
29
+ # Defaults to the same VTK setting.
30
+ #
31
+
32
+ # Standard CMake option for building libraries shared or static by default.
33
+ option(BUILD_SHARED_LIBS
34
+ "Build with shared libraries."
35
+ ${VTK_BUILD_SHARED_LIBS})
36
+ # Copy the CMake option to a setting with VTK_VMTK_ prefix for use in
37
+ # our project. This name is used in vtkvmtkConfigure.h.in.
38
+ set(VTK_VMTK_BUILD_SHARED_LIBS ${BUILD_SHARED_LIBS})
39
+
40
+ # If this is a build tree, provide an option for putting
41
+ # this project's executables and libraries in with VTK's.
42
+ if (EXISTS ${VTK_DIR}/bin)
43
+ option(USE_VTK_OUTPUT_PATHS
44
+ "Use VTK's output directory for this project's executables and libraries."
45
+ OFF)
46
+ mark_as_advanced (USE_VTK_OUTPUT_PATHS)
47
+ if (USE_VTK_OUTPUT_PATHS)
48
+ set (LIBRARY_OUTPUT_PATH ${VTK_DIR}/bin)
49
+ set (EXECUTABLE_OUTPUT_PATH ${VTK_DIR}/bin)
50
+ endif ()
51
+ endif ()
52
+
53
+
54
+ #
55
+ # Wrap Tcl, Java, Python
56
+ #
57
+ # Rational: even if your VTK was wrapped, it does not mean that you want to
58
+ # wrap your own local classes.
59
+ # Default value is OFF as the VTK cache might have set them to ON but
60
+ # the wrappers might not be present (or yet not found).
61
+ #
62
+
63
+ #
64
+ # Python
65
+ #
66
+
67
+ if (VTK_WRAP_PYTHON)
68
+
69
+ option(VTK_VMTK_WRAP_PYTHON
70
+ "Wrap classes into the Python interpreted language."
71
+ ON)
72
+
73
+ if (VTK_VMTK_WRAP_PYTHON)
74
+ set(VTK_WRAP_PYTHON3_INIT_DIR "${VTK_VMTK_SOURCE_DIR}/Wrapping")
75
+ #include(${VTK_CMAKE_DIR}/vtkWrapPython.cmake)
76
+ if (WIN32)
77
+ if (NOT BUILD_SHARED_LIBS)
78
+ message(FATAL_ERROR "Python support requires BUILD_SHARED_LIBS to be ON.")
79
+ set (VTK_VMTK_CAN_BUILD 0)
80
+ endif ()
81
+ endif ()
82
+ endif ()
83
+
84
+ else ()
85
+
86
+ if (VTK_VMTK_WRAP_PYTHON)
87
+ message("Warning. VTK_VMTK_WRAP_PYTHON is ON but the VTK version you have "
88
+ "chosen has not support for Python (VTK_WRAP_PYTHON is OFF). "
89
+ "Please set VTK_VMTK_WRAP_PYTHON to OFF.")
90
+ set (VTK_VMTK_WRAP_PYTHON OFF)
91
+ endif ()
92
+
93
+ endif ()
94
+
95
+ #
96
+ # Java
97
+ #
98
+
99
+ if (VTK_WRAP_JAVA)
100
+
101
+ option(VTK_VMTK_WRAP_JAVA
102
+ "Wrap classes into the Java interpreted language."
103
+ ON)
104
+
105
+ if (VTK_VMTK_WRAP_JAVA)
106
+ if (VMTK_USE_VTK9)
107
+ message(FATAL_ERROR "Java wrapping of classes is not supported with VTK 9")
108
+ endif ()
109
+ set(VTK_WRAP_JAVA3_INIT_DIR "${VTK_VMTK_SOURCE_DIR}/Wrapping")
110
+ include(${VTK_CMAKE_DIR}/vtkWrapJava.cmake)
111
+ if (WIN32)
112
+ if (NOT BUILD_SHARED_LIBS)
113
+ message(FATAL_ERROR "Java support requires BUILD_SHARED_LIBS to be ON.")
114
+ set (VTK_VMTK_CAN_BUILD 0)
115
+ endif ()
116
+ endif ()
117
+
118
+ # Tell the java wrappers where to go.
119
+ set(VTK_JAVA_HOME ${VTK_VMTK_BINARY_DIR}/java/vtkvmtk)
120
+ make_directory(${VTK_JAVA_HOME})
121
+ endif ()
122
+
123
+ else ()
124
+
125
+ if (VTK_VMTK_WRAP_JAVA)
126
+ message("Warning. VTK_VMTK_WRAP_JAVA is ON but the VTK version you have "
127
+ "chosen has not support for Java (VTK_WRAP_JAVA is OFF). "
128
+ "Please set VTK_VMTK_WRAP_JAVA to OFF.")
129
+ set (VTK_VMTK_WRAP_JAVA OFF)
130
+ endif ()
131
+
132
+ endif ()
133
+
134
+ # setup our local hints file in case wrappers need them.
135
+ set(VTK_WRAP_HINTS ${VTK_VMTK_SOURCE_DIR}/Wrapping/hints)
@@ -0,0 +1,32 @@
1
+ # Tell the user project where to find headers and libraries
2
+ set(VMTK_CPP_SOURCE_DIRS "@VMTK_SOURCE_DIR@/vtkVmtk")
3
+
4
+ set(VMTK_INCLUDE_DIRS
5
+ ${VMTK_CPP_SOURCE_DIRS}
6
+ ${VMTK_CPP_SOURCE_DIRS}/Common
7
+ ${VMTK_CPP_SOURCE_DIRS}/ComputationalGeometry
8
+ ${VMTK_CPP_SOURCE_DIRS}/Contrib
9
+ ${VMTK_CPP_SOURCE_DIRS}/DifferentialGeometry
10
+ ${VMTK_CPP_SOURCE_DIRS}/IO
11
+ ${VMTK_CPP_SOURCE_DIRS}/Misc
12
+ ${VMTK_CPP_SOURCE_DIRS}/Segmentation
13
+ "@VMTK_BINARY_DIR@"
14
+ "@VMTK_BINARY_DIR@/vtkVmtk"
15
+ )
16
+
17
+ set(VMTK_BUILD_SETTINGS_FILE
18
+ "@VMTK_BINARY_DIR@/VMTKBuildSettings.cmake"
19
+ )
20
+
21
+ include(
22
+ "@VMTK_BINARY_DIR@/VMTK-Targets.cmake"
23
+ )
24
+
25
+ set(VMTK_LIBRARY_DIRS "@VMTK_BINARY_DIR@/bin")
26
+
27
+ # VMTK VTK wrap hierarchy files
28
+ @VMTK_WRAP_HIERARCHY_FILES_CONFIG@
29
+
30
+ set(VMTK_USE_FILE
31
+ "@VMTK_BINARY_DIR@/VMTKUse.cmake"
32
+ )
@@ -0,0 +1,9 @@
1
+ include(CMakeImportBuildSettings)
2
+
3
+ cmake_import_build_settings("${VMTK_BUILD_SETTINGS_FILE}")
4
+
5
+ include_directories(${VMTK_INCLUDE_DIRS})
6
+
7
+ link_directories(${VMTK_LIBRARY_DIRS})
8
+
9
+ link_libraries(vtkvmtkCommon vtkvmtkComputationalGeometry vtkvmtkContrib vtkvmtkDifferentialGeometry vtkvmtkIO vtkvmtkITK vtkvmtkMisc vtkvmtkSegmentation nl tet)
@@ -0,0 +1,103 @@
1
+ include(CMakeParseArguments)
2
+
3
+ set(Slicer_VTK_WRAP_HIERARCHY_DIR ${VMTK_BINARY_DIR})
4
+ set(Slicer_VTK_WRAP_MODULE_INSTALL_COMPONENT_IDENTIFIER "PythonRuntimeLibraries")
5
+ set(Slicer_VTK_WRAP_HIERARCHY_TARGETS_PROPERTY_NAME "VMTK_WRAP_HIERARCHY_TARGETS")
6
+
7
+ include(vtkMacroKitPythonWrap)
8
+
9
+ function(vmtk_build_library)
10
+ set(options)
11
+ set(oneValueArgs NAME)
12
+ set(multiValueArgs SRCS TARGET_LINK_LIBRARIES INCLUDE_DIRECTORIES)
13
+ cmake_parse_arguments(VMTK_LIB "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
14
+
15
+ set(expected_defined_vars NAME SRCS)
16
+
17
+ foreach(var ${expected_defined_vars})
18
+ if(NOT DEFINED VMTK_LIB_${var})
19
+ message(FATAL_ERROR "error: ${var} parameter is mandatory !")
20
+ endif()
21
+ endforeach()
22
+
23
+ if(VMTK_LIB_INCLUDE_DIRECTORIES)
24
+ include_directories(${VMTK_LIB_INCLUDE_DIRECTORIES})
25
+ endif()
26
+
27
+ set(lib_name ${VMTK_LIB_NAME})
28
+
29
+ if(NOT VMTK_LIB_NAME MATCHES "^vtkvmtk")
30
+ set(lib_name vtkvmtk${VMTK_LIB_NAME})
31
+ endif()
32
+
33
+ add_library(${lib_name} ${VMTK_LIB_SRCS})
34
+
35
+ if(VMTK_LIBRARY_PROPERTIES)
36
+ set_target_properties(${lib_name} PROPERTIES ${VMTK_LIBRARY_PROPERTIES})
37
+ endif()
38
+
39
+ set_target_properties(${lib_name} PROPERTIES LINKER_LANGUAGE CXX)
40
+ if (APPLE)
41
+ set_target_properties( ${lib_name} PROPERTIES LINK_FLAGS "-undefined dynamic_lookup" )
42
+ endif ()
43
+
44
+ if(NOT WIN32)
45
+ set_target_properties(${lib_name} PROPERTIES COMPILE_FLAGS -fPIC)
46
+ endif()
47
+
48
+ if(VMTK_LIB_TARGET_LINK_LIBRARIES)
49
+ if (APPLE)
50
+ set(vmtk_target_link_libs )
51
+ foreach(lib IN LISTS VMTK_LIB_TARGET_LINK_LIBRARIES)
52
+ if(NOT lib MATCHES "python")
53
+ list(APPEND vmtk_target_link_libs ${lib})
54
+ endif()
55
+ endforeach()
56
+ target_link_libraries(${lib_name} ${vmtk_target_link_libs})
57
+ else ()
58
+ target_link_libraries(${lib_name} ${VMTK_LIB_TARGET_LINK_LIBRARIES})
59
+ endif ()
60
+ endif()
61
+
62
+ install(TARGETS ${lib_name}
63
+ EXPORT VMTK-Targets
64
+ LIBRARY DESTINATION ${VTK_VMTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
65
+ ARCHIVE DESTINATION ${VTK_VMTK_INSTALL_LIB_DIR} COMPONENT Development ${VMTK_WHEEL_EXCLUDE_FROM_ALL}
66
+ RUNTIME DESTINATION ${VTK_VMTK_INSTALL_BIN_DIR} COMPONENT RuntimeExecutables
67
+ )
68
+
69
+ # Development files are not shipped in the Python wheel.
70
+ if(NOT VMTK_WHEEL_BUILD)
71
+ file(GLOB files "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
72
+ install(FILES ${files}
73
+ DESTINATION ${VTK_VMTK_INSTALL_INCLUDE_DIR}
74
+ COMPONENT Development)
75
+ install(FILES ${VTK_VMTK_SEGMENTATION_ITK_HEADERS}
76
+ DESTINATION ${VTK_VMTK_INSTALL_INCLUDE_DIR}
77
+ COMPONENT Development)
78
+ endif()
79
+
80
+ if (VTK_WRAP_PYTHON AND VTK_VMTK_WRAP_PYTHON)
81
+
82
+ set(vmtk_wrapped_libs )
83
+ foreach(lib IN LISTS VMTK_LIB_TARGET_LINK_LIBRARIES)
84
+ if(lib MATCHES "^vtkvmtk" AND TARGET ${lib}PythonD)
85
+ list(APPEND vmtk_wrapped_libs ${lib})
86
+ endif()
87
+ endforeach()
88
+
89
+ if(NOT DEFINED VTK_VMTK_WRAPPED_MODULE_INSTALL_LIB_DIR)
90
+ set(VTK_VMTK_WRAPPED_MODULE_INSTALL_LIB_DIR ${VTK_VMTK_MODULE_INSTALL_LIB_DIR})
91
+ endif()
92
+
93
+ vtkMacroKitPythonWrap(
94
+ KIT_NAME ${lib_name}
95
+ KIT_SRCS ${VMTK_LIB_SRCS}
96
+ KIT_PYTHON_LIBRARIES ${vmtk_wrapped_libs}
97
+ KIT_INSTALL_BIN_DIR ${VTK_VMTK_INSTALL_BIN_DIR}
98
+ KIT_INSTALL_LIB_DIR ${VTK_VMTK_INSTALL_LIB_DIR}
99
+ KIT_MODULE_INSTALL_LIB_DIR ${VTK_VMTK_WRAPPED_MODULE_INSTALL_LIB_DIR}
100
+ )
101
+ endif ()
102
+
103
+ endfunction()