vivarium-public-health 4.3.4__tar.gz → 4.3.5__tar.gz

{vivarium_public_health-4.3.4 → vivarium_public_health-4.3.5}/.gitignore

@@ -114,4 +114,8 @@ src/vivarium_public_health/_version.py
 tests/proportion_test_diagnostics.csv
 
 # macOS
-*.DS_Store
+*.DS_Store
+
+# Visual Studio Code project settings
+.vscode/
+

{vivarium_public_health-4.3.4 → vivarium_public_health-4.3.5}/CHANGELOG.rst

@@ -1,3 +1,7 @@
+**4.3.5 - 08/01/25**
+
+  - Use vivarium_dependencies for common setup constraints
+
 **4.3.4 - 07/31/25**
 
   - Modify futurewarning fix from v4.2.6 to not require pandas>=2.2.0
@@ -22,7 +26,7 @@
   - Add Intervention and InterventionEffect classes
   - Refactor to pass Exposure component to RiskExposureDistribution classes
   - Update exposure category names for DichotomousDistribution
-  
+
 **4.2.6 - 07/25/25**
 
   - Feature: Support new environment creation via 'make build-env'

{vivarium_public_health-4.3.4/src/vivarium_public_health.egg-info → vivarium_public_health-4.3.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: vivarium_public_health
-Version: 4.3.4
+Version: 4.3.5
 Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
 Home-page: https://github.com/ihmeuw/vivarium_public_health
 Author: The vivarium developers
@@ -26,45 +26,28 @@ Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
 Classifier: Topic :: Scientific/Engineering :: Physics
 Classifier: Topic :: Software Development :: Libraries
 License-File: LICENSE.txt
+Requires-Dist: vivarium_dependencies[loguru,numpy_lt_2,pandas,pyarrow,scipy,tables]
 Requires-Dist: vivarium_build_utils<3.0.0,>=2.0.1
 Requires-Dist: vivarium>=3.4.3
-Requires-Dist: layered_config_tree>=3.2.0
-Requires-Dist: loguru
-Requires-Dist: numpy<2.0.0
-Requires-Dist: pandas
-Requires-Dist: scipy
-Requires-Dist: tables
+Requires-Dist: layered_config_tree
 Requires-Dist: risk_distributions>=2.0.11
-Requires-Dist: pyarrow
 Provides-Extra: docs
-Requires-Dist: sphinx<7.0; extra == "docs"
-Requires-Dist: sphinx-rtd-theme; extra == "docs"
-Requires-Dist: sphinx-click; extra == "docs"
-Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
-Requires-Dist: IPython; extra == "docs"
-Requires-Dist: matplotlib; extra == "docs"
+Requires-Dist: vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]; extra == "docs"
+Provides-Extra: interactive
+Requires-Dist: vivarium_dependencies[interactive]; extra == "interactive"
 Provides-Extra: test
+Requires-Dist: vivarium_dependencies[pytest]; extra == "test"
 Requires-Dist: vivarium_testing_utils; extra == "test"
-Requires-Dist: pytest; extra == "test"
-Requires-Dist: pytest-cov; extra == "test"
-Requires-Dist: pytest-mock; extra == "test"
 Requires-Dist: hypothesis; extra == "test"
 Requires-Dist: pyyaml; extra == "test"
 Provides-Extra: dev
-Requires-Dist: sphinx<7.0; extra == "dev"
-Requires-Dist: sphinx-rtd-theme; extra == "dev"
-Requires-Dist: sphinx-click; extra == "dev"
-Requires-Dist: sphinx-autodoc-typehints; extra == "dev"
-Requires-Dist: IPython; extra == "dev"
-Requires-Dist: matplotlib; extra == "dev"
+Requires-Dist: vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]; extra == "dev"
+Requires-Dist: vivarium_dependencies[interactive]; extra == "dev"
+Requires-Dist: vivarium_dependencies[pytest]; extra == "dev"
 Requires-Dist: vivarium_testing_utils; extra == "dev"
-Requires-Dist: pytest; extra == "dev"
-Requires-Dist: pytest-cov; extra == "dev"
-Requires-Dist: pytest-mock; extra == "dev"
 Requires-Dist: hypothesis; extra == "dev"
 Requires-Dist: pyyaml; extra == "dev"
-Requires-Dist: black==22.3.0; extra == "dev"
-Requires-Dist: isort==5.13.2; extra == "dev"
+Requires-Dist: vivarium_dependencies[lint]; extra == "dev"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

{vivarium_public_health-4.3.4 → vivarium_public_health-4.3.5}/setup.py

@@ -42,42 +42,27 @@ if __name__ == "__main__":
         long_description = f.read()
 
     install_requirements = [
+        "vivarium_dependencies[pandas,numpy_lt_2,scipy,tables,loguru,pyarrow]",
         "vivarium_build_utils>=2.0.1,<3.0.0",
         "vivarium>=3.4.3",
-        "layered_config_tree>=3.2.0",
-        "loguru",
-        "numpy<2.0.0",
-        "pandas",
-        "scipy",
-        "tables",
+        "layered_config_tree",
         "risk_distributions>=2.0.11",
-        "pyarrow",
     ]
 
     setup_requires = ["setuptools_scm"]
 
     test_requirements = [
+        "vivarium_dependencies[pytest]",
         "vivarium_testing_utils",
-        "pytest",
-        "pytest-cov",
-        "pytest-mock",
         "hypothesis",
         "pyyaml",
     ]
 
-    doc_requirements = [
-        "sphinx<7.0",
-        "sphinx-rtd-theme",
-        "sphinx-click",
-        "sphinx-autodoc-typehints",
-        "IPython",
-        "matplotlib",
-    ]
+    doc_requirements = ["vivarium_dependencies[sphinx,sphinx-click,ipython,matplotlib]"]
 
-    lint_requirements = [
-        "black==22.3.0",
-        "isort==5.13.2",
-    ]
+    interactive_requirements = ["vivarium_dependencies[interactive]"]
+
+    lint_requirements = ["vivarium_dependencies[lint]"]
 
     setup(
         name=about["__title__"],
@@ -115,8 +100,12 @@ if __name__ == "__main__":
         tests_require=test_requirements,
         extras_require={
             "docs": doc_requirements,
+            "interactive": interactive_requirements,
             "test": test_requirements,
-            "dev": doc_requirements + test_requirements + lint_requirements,
+            "dev": doc_requirements
+            + interactive_requirements
+            + test_requirements
+            + lint_requirements,
         },
         zip_safe=False,
         use_scm_version={

vivarium_public_health-4.3.5/src/vivarium_public_health/_version.py

@@ -0,0 +1 @@
+__version__ = "4.3.5"

{vivarium_public_health-4.3.4 → vivarium_public_health-4.3.5/src/vivarium_public_health.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: vivarium_public_health
-Version: 4.3.4
+Version: 4.3.5
 Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
 Home-page: https://github.com/ihmeuw/vivarium_public_health
 Author: The vivarium developers
@@ -26,45 +26,28 @@ Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
 Classifier: Topic :: Scientific/Engineering :: Physics
 Classifier: Topic :: Software Development :: Libraries
 License-File: LICENSE.txt
+Requires-Dist: vivarium_dependencies[loguru,numpy_lt_2,pandas,pyarrow,scipy,tables]
 Requires-Dist: vivarium_build_utils<3.0.0,>=2.0.1
 Requires-Dist: vivarium>=3.4.3
-Requires-Dist: layered_config_tree>=3.2.0
-Requires-Dist: loguru
-Requires-Dist: numpy<2.0.0
-Requires-Dist: pandas
-Requires-Dist: scipy
-Requires-Dist: tables
+Requires-Dist: layered_config_tree
 Requires-Dist: risk_distributions>=2.0.11
-Requires-Dist: pyarrow
 Provides-Extra: docs
-Requires-Dist: sphinx<7.0; extra == "docs"
-Requires-Dist: sphinx-rtd-theme; extra == "docs"
-Requires-Dist: sphinx-click; extra == "docs"
-Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
-Requires-Dist: IPython; extra == "docs"
-Requires-Dist: matplotlib; extra == "docs"
+Requires-Dist: vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]; extra == "docs"
+Provides-Extra: interactive
+Requires-Dist: vivarium_dependencies[interactive]; extra == "interactive"
 Provides-Extra: test
+Requires-Dist: vivarium_dependencies[pytest]; extra == "test"
 Requires-Dist: vivarium_testing_utils; extra == "test"
-Requires-Dist: pytest; extra == "test"
-Requires-Dist: pytest-cov; extra == "test"
-Requires-Dist: pytest-mock; extra == "test"
 Requires-Dist: hypothesis; extra == "test"
 Requires-Dist: pyyaml; extra == "test"
 Provides-Extra: dev
-Requires-Dist: sphinx<7.0; extra == "dev"
-Requires-Dist: sphinx-rtd-theme; extra == "dev"
-Requires-Dist: sphinx-click; extra == "dev"
-Requires-Dist: sphinx-autodoc-typehints; extra == "dev"
-Requires-Dist: IPython; extra == "dev"
-Requires-Dist: matplotlib; extra == "dev"
+Requires-Dist: vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]; extra == "dev"
+Requires-Dist: vivarium_dependencies[interactive]; extra == "dev"
+Requires-Dist: vivarium_dependencies[pytest]; extra == "dev"
 Requires-Dist: vivarium_testing_utils; extra == "dev"
-Requires-Dist: pytest; extra == "dev"
-Requires-Dist: pytest-cov; extra == "dev"
-Requires-Dist: pytest-mock; extra == "dev"
 Requires-Dist: hypothesis; extra == "dev"
 Requires-Dist: pyyaml; extra == "dev"
-Requires-Dist: black==22.3.0; extra == "dev"
-Requires-Dist: isort==5.13.2; extra == "dev"
+Requires-Dist: vivarium_dependencies[lint]; extra == "dev"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

vivarium_public_health-4.3.5/src/vivarium_public_health.egg-info/requires.txt

@@ -0,0 +1,26 @@
+vivarium_dependencies[loguru,numpy_lt_2,pandas,pyarrow,scipy,tables]
+vivarium_build_utils<3.0.0,>=2.0.1
+vivarium>=3.4.3
+layered_config_tree
+risk_distributions>=2.0.11
+
+[dev]
+vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]
+vivarium_dependencies[interactive]
+vivarium_dependencies[pytest]
+vivarium_testing_utils
+hypothesis
+pyyaml
+vivarium_dependencies[lint]
+
+[docs]
+vivarium_dependencies[ipython,matplotlib,sphinx,sphinx-click]
+
+[interactive]
+vivarium_dependencies[interactive]
+
+[test]
+vivarium_dependencies[pytest]
+vivarium_testing_utils
+hypothesis
+pyyaml

vivarium_public_health-4.3.4/src/vivarium_public_health/_version.py

@@ -1 +0,0 @@
-__version__ = "4.3.4"

vivarium_public_health-4.3.4/src/vivarium_public_health.egg-info/requires.txt

@@ -1,42 +0,0 @@
-vivarium_build_utils<3.0.0,>=2.0.1
-vivarium>=3.4.3
-layered_config_tree>=3.2.0
-loguru
-numpy<2.0.0
-pandas
-scipy
-tables
-risk_distributions>=2.0.11
-pyarrow
-
-[dev]
-sphinx<7.0
-sphinx-rtd-theme
-sphinx-click
-sphinx-autodoc-typehints
-IPython
-matplotlib
-vivarium_testing_utils
-pytest
-pytest-cov
-pytest-mock
-hypothesis
-pyyaml
-black==22.3.0
-isort==5.13.2
-
-[docs]
-sphinx<7.0
-sphinx-rtd-theme
-sphinx-click
-sphinx-autodoc-typehints
-IPython
-matplotlib
-
-[test]
-vivarium_testing_utils
-pytest
-pytest-cov
-pytest-mock
-hypothesis
-pyyaml