vivarium-public-health 4.2.4__tar.gz → 4.2.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (157) hide show
  1. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/CHANGELOG.rst +4 -0
  2. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/PKG-INFO +2 -2
  3. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/setup.py +1 -1
  4. vivarium_public_health-4.2.5/src/vivarium_public_health/_version.py +1 -0
  5. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/data_transformations.py +9 -3
  6. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/PKG-INFO +2 -2
  7. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/requires.txt +1 -1
  8. vivarium_public_health-4.2.4/src/vivarium_public_health/_version.py +0 -1
  9. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.bandit +0 -0
  10. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.flake8 +0 -0
  11. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.gitattributes +0 -0
  12. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.github/CODEOWNERS +0 -0
  13. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.github/pull_request_template.md +0 -0
  14. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.github/workflows/deploy.yml +0 -0
  15. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.gitignore +0 -0
  16. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.pylintrc +0 -0
  17. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.readthedocs.yml +0 -0
  18. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/.zenodo.json +0 -0
  19. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/CODE_OF_CONDUCT.rst +0 -0
  20. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/CONTRIBUTING.rst +0 -0
  21. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/Jenkinsfile +0 -0
  22. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/LICENSE.txt +0 -0
  23. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/MANIFEST.in +0 -0
  24. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/Makefile +0 -0
  25. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/README.rst +0 -0
  26. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/Makefile +0 -0
  27. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/nitpick-exceptions +0 -0
  28. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/_static/style.css +0 -0
  29. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/_templates/layout.html +0 -0
  30. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/index.rst +0 -0
  31. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/model.rst +0 -0
  32. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/models.rst +0 -0
  33. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/special_disease.rst +0 -0
  34. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/state.rst +0 -0
  35. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/disease/transition.rst +0 -0
  36. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/index.rst +0 -0
  37. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/delay.rst +0 -0
  38. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/disease.rst +0 -0
  39. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/index.rst +0 -0
  40. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/intervention.rst +0 -0
  41. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/magic_wand_components.rst +0 -0
  42. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/observer.rst +0 -0
  43. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/mslt/population.rst +0 -0
  44. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/plugins/index.rst +0 -0
  45. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/plugins/parser.rst +0 -0
  46. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/population/add_new_birth_cohorts.rst +0 -0
  47. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/population/base_population.rst +0 -0
  48. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/population/data_transformations.rst +0 -0
  49. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/population/index.rst +0 -0
  50. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/population/mortality.rst +0 -0
  51. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/disability.rst +0 -0
  52. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/disease.rst +0 -0
  53. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/index.rst +0 -0
  54. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/mortality.rst +0 -0
  55. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/observer.rst +0 -0
  56. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/risk.rst +0 -0
  57. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/simple_cause.rst +0 -0
  58. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/results/stratification.rst +0 -0
  59. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/base_risk.rst +0 -0
  60. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/data_transformations.rst +0 -0
  61. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/distributions.rst +0 -0
  62. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/effect.rst +0 -0
  63. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/implementations/index.rst +0 -0
  64. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/implementations/low_birth_weight_and_short_gestation.rst +0 -0
  65. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/risks/index.rst +0 -0
  66. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/treatment/index.rst +0 -0
  67. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/treatment/magic_wand.rst +0 -0
  68. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/treatment/scale_up.rst +0 -0
  69. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/treatment/therapeutic_inertia.rst +0 -0
  70. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/api_reference/utilities.rst +0 -0
  71. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/conf.py +0 -0
  72. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/index.rst +0 -0
  73. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/tutorials/index.rst +0 -0
  74. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/docs/source/tutorials/risk_exposure.rst +0 -0
  75. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/pyproject.toml +0 -0
  76. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/python_versions.json +0 -0
  77. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/setup.cfg +0 -0
  78. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/__about__.py +0 -0
  79. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/__init__.py +0 -0
  80. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/__init__.py +0 -0
  81. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/exceptions.py +0 -0
  82. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/model.py +0 -0
  83. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/models.py +0 -0
  84. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/special_disease.py +0 -0
  85. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/state.py +0 -0
  86. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/disease/transition.py +0 -0
  87. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/__init__.py +0 -0
  88. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/delay.py +0 -0
  89. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/disease.py +0 -0
  90. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/intervention.py +0 -0
  91. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/magic_wand_components.py +0 -0
  92. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/observer.py +0 -0
  93. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/mslt/population.py +0 -0
  94. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/plugins/__init__.py +0 -0
  95. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/plugins/parser.py +0 -0
  96. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/__init__.py +0 -0
  97. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/add_new_birth_cohorts.py +0 -0
  98. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/base_population.py +0 -0
  99. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/mortality.py +0 -0
  100. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/__init__.py +0 -0
  101. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/columns.py +0 -0
  102. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/disability.py +0 -0
  103. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/disease.py +0 -0
  104. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/mortality.py +0 -0
  105. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/observer.py +0 -0
  106. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/risk.py +0 -0
  107. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/simple_cause.py +0 -0
  108. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/results/stratification.py +0 -0
  109. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/__init__.py +0 -0
  110. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/base_risk.py +0 -0
  111. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/data_transformations.py +0 -0
  112. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/distributions.py +0 -0
  113. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/effect.py +0 -0
  114. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/implementations/__init__.py +0 -0
  115. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py +0 -0
  116. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/treatment/__init__.py +0 -0
  117. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/treatment/magic_wand.py +0 -0
  118. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/treatment/scale_up.py +0 -0
  119. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/treatment/therapeutic_inertia.py +0 -0
  120. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/utilities.py +0 -0
  121. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/SOURCES.txt +0 -0
  122. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/dependency_links.txt +0 -0
  123. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/not-zip-safe +0 -0
  124. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/top_level.txt +0 -0
  125. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/__init__.py +0 -0
  126. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/conftest.py +0 -0
  127. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/data/rr_interpolator.csv +0 -0
  128. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/disease/__init__.py +0 -0
  129. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/disease/test_disease.py +0 -0
  130. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/disease/test_special_disease.py +0 -0
  131. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/mock_artifact.py +0 -0
  132. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/plugins/__init__.py +0 -0
  133. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/plugins/test_parser.py +0 -0
  134. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/__init__.py +0 -0
  135. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/conftest.py +0 -0
  136. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/test_add_new_birth_cohort.py +0 -0
  137. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/test_base_population.py +0 -0
  138. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/test_data_transformations.py +0 -0
  139. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/population/test_mortality.py +0 -0
  140. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/__init__.py +0 -0
  141. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_categorical_risk_observer.py +0 -0
  142. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_disability.py +0 -0
  143. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_disability_observer.py +0 -0
  144. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_disease_observer.py +0 -0
  145. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_mortality_observer.py +0 -0
  146. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/results/test_stratification.py +0 -0
  147. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/__init__.py +0 -0
  148. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/conftest.py +0 -0
  149. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/test_base_risk.py +0 -0
  150. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/test_data_transformations.py +0 -0
  151. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/test_distributions.py +0 -0
  152. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/test_effect.py +0 -0
  153. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/risks/test_low_birth_weight_and_short_gestation.py +0 -0
  154. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/test_utilities.py +0 -0
  155. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/treatment/__init__.py +0 -0
  156. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tests/treatment/test_scale_up.py +0 -0
  157. {vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/tox.ini +0 -0
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/CHANGELOG.rst RENAMED
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+ **4.2.5 - 07/18/25**
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+ - Hush FutureWarnings: add include_groups=False to apply call in StratifiedObservation
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  **4.2.4 - 07/16/25**
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  - Support pinning of vivarium_build_utils; pin vivarium_build_utils>=1.1.0,<2.0.0
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: vivarium_public_health
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- Version: 4.2.4
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+ Version: 4.2.5
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  Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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  Home-page: https://github.com/ihmeuw/vivarium_public_health
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  Author: The vivarium developers
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  Requires-Dist: layered_config_tree>=3.2.0
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  Requires-Dist: loguru
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  Requires-Dist: numpy<2.0.0
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- Requires-Dist: pandas
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+ Requires-Dist: pandas>=2.2.0
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  Requires-Dist: scipy
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  Requires-Dist: tables
37
37
  Requires-Dist: risk_distributions>=2.0.11
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/setup.py RENAMED
@@ -47,7 +47,7 @@ if __name__ == "__main__":
47
47
  "layered_config_tree>=3.2.0",
48
48
  "loguru",
49
49
  "numpy<2.0.0",
50
- "pandas",
50
+ "pandas>=2.2.0",
51
51
  "scipy",
52
52
  "tables",
53
53
  "risk_distributions>=2.0.11",
vivarium_public_health-4.2.5/src/vivarium_public_health/_version.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = "4.2.5"
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health/population/data_transformations.py RENAMED
@@ -54,21 +54,27 @@ def assign_demographic_proportions(
54
54
 
55
55
  population_data["P(sex, location, age| year)"] = (
56
56
  population_data.groupby("year_start", as_index=False)
57
- .apply(lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum())
57
+ .apply(
58
+ lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum(), include_groups=False
59
+ )
58
60
  .reset_index(level=0)["value"]
59
61
  .fillna(0.0)
60
62
  )
61
63
 
62
64
  population_data["P(sex, location | age, year)"] = (
63
65
  population_data.groupby(["age", "year_start"], as_index=False)
64
- .apply(lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum())
66
+ .apply(
67
+ lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum(), include_groups=False
68
+ )
65
69
  .reset_index(level=0)["value"]
66
70
  .fillna(0.0)
67
71
  )
68
72
 
69
73
  population_data["P(age | year, sex, location)"] = (
70
74
  population_data.groupby(["year_start", "sex", "location"], as_index=False)
71
- .apply(lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum())
75
+ .apply(
76
+ lambda sub_pop: sub_pop[["value"]] / sub_pop["value"].sum(), include_groups=False
77
+ )
72
78
  .reset_index(level=0)["value"]
73
79
  .fillna(0.0)
74
80
  )
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: vivarium_public_health
3
- Version: 4.2.4
3
+ Version: 4.2.5
4
4
  Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
5
5
  Home-page: https://github.com/ihmeuw/vivarium_public_health
6
6
  Author: The vivarium developers
@@ -31,7 +31,7 @@ Requires-Dist: vivarium>=3.4.3
31
31
  Requires-Dist: layered_config_tree>=3.2.0
32
32
  Requires-Dist: loguru
33
33
  Requires-Dist: numpy<2.0.0
34
- Requires-Dist: pandas
34
+ Requires-Dist: pandas>=2.2.0
35
35
  Requires-Dist: scipy
36
36
  Requires-Dist: tables
37
37
  Requires-Dist: risk_distributions>=2.0.11
{vivarium_public_health-4.2.4 → vivarium_public_health-4.2.5}/src/vivarium_public_health.egg-info/requires.txt RENAMED
@@ -3,7 +3,7 @@ vivarium>=3.4.3
3
3
  layered_config_tree>=3.2.0
4
4
  loguru
5
5
  numpy<2.0.0
6
- pandas
6
+ pandas>=2.2.0
7
7
  scipy
8
8
  tables
9
9
  risk_distributions>=2.0.11
vivarium_public_health-4.2.4/src/vivarium_public_health/_version.py DELETED
@@ -1 +0,0 @@
1
- __version__ = "4.2.4"