vivarium-public-health 4.2.3__tar.gz → 4.2.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/CHANGELOG.rst +4 -0
- vivarium_public_health-4.2.4/Jenkinsfile +34 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/Makefile +3 -2
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/PKG-INFO +2 -1
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/setup.py +1 -0
- vivarium_public_health-4.2.4/src/vivarium_public_health/_version.py +1 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/PKG-INFO +2 -1
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/requires.txt +1 -0
- vivarium_public_health-4.2.3/Jenkinsfile +0 -6
- vivarium_public_health-4.2.3/src/vivarium_public_health/_version.py +0 -1
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.bandit +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.flake8 +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.gitattributes +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.github/CODEOWNERS +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.github/pull_request_template.md +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.github/workflows/deploy.yml +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.gitignore +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.pylintrc +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.readthedocs.yml +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.zenodo.json +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/CODE_OF_CONDUCT.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/CONTRIBUTING.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/LICENSE.txt +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/MANIFEST.in +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/README.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/Makefile +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/nitpick-exceptions +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/_static/style.css +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/_templates/layout.html +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/model.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/models.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/special_disease.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/state.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/disease/transition.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/delay.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/disease.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/intervention.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/magic_wand_components.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/observer.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/mslt/population.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/plugins/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/plugins/parser.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/population/add_new_birth_cohorts.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/population/base_population.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/population/data_transformations.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/population/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/population/mortality.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/disability.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/disease.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/mortality.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/observer.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/risk.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/simple_cause.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/results/stratification.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/base_risk.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/data_transformations.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/distributions.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/effect.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/implementations/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/implementations/low_birth_weight_and_short_gestation.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/risks/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/treatment/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/treatment/magic_wand.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/treatment/scale_up.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/treatment/therapeutic_inertia.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/api_reference/utilities.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/conf.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/tutorials/index.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/docs/source/tutorials/risk_exposure.rst +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/pyproject.toml +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/python_versions.json +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/setup.cfg +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/__about__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/exceptions.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/model.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/models.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/special_disease.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/state.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/disease/transition.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/delay.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/disease.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/intervention.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/magic_wand_components.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/mslt/population.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/plugins/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/plugins/parser.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/population/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/population/add_new_birth_cohorts.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/population/base_population.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/population/data_transformations.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/population/mortality.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/columns.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/disability.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/disease.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/mortality.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/risk.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/simple_cause.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/results/stratification.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/base_risk.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/data_transformations.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/distributions.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/effect.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/implementations/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/treatment/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/treatment/magic_wand.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/treatment/scale_up.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/treatment/therapeutic_inertia.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health/utilities.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/SOURCES.txt +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/dependency_links.txt +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/not-zip-safe +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/src/vivarium_public_health.egg-info/top_level.txt +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/conftest.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/data/rr_interpolator.csv +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/disease/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/disease/test_disease.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/disease/test_special_disease.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/mock_artifact.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/plugins/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/plugins/test_parser.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/conftest.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/test_add_new_birth_cohort.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/test_base_population.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/test_data_transformations.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/population/test_mortality.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_categorical_risk_observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_disability.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_disability_observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_disease_observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_mortality_observer.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/results/test_stratification.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/conftest.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/test_base_risk.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/test_data_transformations.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/test_distributions.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/test_effect.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/risks/test_low_birth_weight_and_short_gestation.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/test_utilities.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/treatment/__init__.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tests/treatment/test_scale_up.py +0 -0
- {vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/tox.ini +0 -0
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/* This Jenkinsfile simply loads the `reusable_pipeline` pipeline from the
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* Library subsection
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@Library("get_vbu_version@main") _
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reusable_pipeline(
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upstream_repos: ["vivarium", "layered_config_tree", "risk_distributions"],
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run_mypy: false,
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)
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@@ -3,11 +3,12 @@ ifdef JENKINS_URL
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# Files are already in workspace from shared library
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MAKE_INCLUDES := .
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else
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-
# For local dev,
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-
MAKE_INCLUDES :=
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+
# For local dev, use the installed vivarium_build_utils package
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MAKE_INCLUDES := $(shell python -c "from vivarium_build_utils.resources import get_makefiles_path; print(get_makefiles_path())")
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endif
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PACKAGE_NAME = vivarium_public_health
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# Include makefiles from vivarium_build_utils
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include $(MAKE_INCLUDES)/base.mk
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include $(MAKE_INCLUDES)/test.mk
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: vivarium_public_health
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Version: 4.2.
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+
Version: 4.2.4
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Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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Home-page: https://github.com/ihmeuw/vivarium_public_health
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Author: The vivarium developers
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@@ -26,6 +26,7 @@ Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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Classifier: Topic :: Scientific/Engineering :: Physics
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Classifier: Topic :: Software Development :: Libraries
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License-File: LICENSE.txt
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+
Requires-Dist: vivarium_build_utils<2.0.0,>=1.1.0
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Requires-Dist: vivarium>=3.4.3
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Requires-Dist: layered_config_tree>=3.2.0
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Requires-Dist: loguru
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@@ -0,0 +1 @@
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1
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+
__version__ = "4.2.4"
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@@ -1,6 +1,6 @@
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1
1
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Metadata-Version: 2.4
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Name: vivarium_public_health
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-
Version: 4.2.
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3
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+
Version: 4.2.4
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Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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Home-page: https://github.com/ihmeuw/vivarium_public_health
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Author: The vivarium developers
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@@ -26,6 +26,7 @@ Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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Classifier: Topic :: Scientific/Engineering :: Physics
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Classifier: Topic :: Software Development :: Libraries
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License-File: LICENSE.txt
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+
Requires-Dist: vivarium_build_utils<2.0.0,>=1.1.0
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Requires-Dist: vivarium>=3.4.3
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Requires-Dist: layered_config_tree>=3.2.0
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Requires-Dist: loguru
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@@ -1 +0,0 @@
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1
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-
__version__ = "4.2.3"
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{vivarium_public_health-4.2.3 → vivarium_public_health-4.2.4}/.github/pull_request_template.md
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