vivarium-public-health 3.0.8__tar.gz → 3.0.9__tar.gz

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  1. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/CHANGELOG.rst +4 -0
  2. {vivarium_public_health-3.0.8/src/vivarium_public_health.egg-info → vivarium_public_health-3.0.9}/PKG-INFO +1 -1
  3. vivarium_public_health-3.0.9/src/vivarium_public_health/_version.py +1 -0
  4. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/treatment/scale_up.py +1 -1
  5. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9/src/vivarium_public_health.egg-info}/PKG-INFO +1 -1
  6. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/SOURCES.txt +2 -1
  7. vivarium_public_health-3.0.9/tests/treatment/test_scale_up.py +7 -0
  8. vivarium_public_health-3.0.8/src/vivarium_public_health/_version.py +0 -1
  9. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.bandit +0 -0
  10. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.flake8 +0 -0
  11. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.gitattributes +0 -0
  12. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.github/CODEOWNERS +0 -0
  13. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.github/pull_request_template.md +0 -0
  14. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.github/workflows/build.yml +0 -0
  15. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.github/workflows/deploy.yml +0 -0
  16. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.gitignore +0 -0
  17. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.pylintrc +0 -0
  18. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.readthedocs.yml +0 -0
  19. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/.zenodo.json +0 -0
  20. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/CODE_OF_CONDUCT.rst +0 -0
  21. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/CONTRIBUTING.rst +0 -0
  22. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/Jenkinsfile +0 -0
  23. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/LICENSE.txt +0 -0
  24. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/MANIFEST.in +0 -0
  25. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/Makefile +0 -0
  26. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/README.rst +0 -0
  27. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/Makefile +0 -0
  28. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/nitpick-exceptions +0 -0
  29. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/_static/style.css +0 -0
  30. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/_templates/layout.html +0 -0
  31. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/index.rst +0 -0
  32. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/model.rst +0 -0
  33. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/models.rst +0 -0
  34. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/special_disease.rst +0 -0
  35. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/state.rst +0 -0
  36. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/disease/transition.rst +0 -0
  37. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/index.rst +0 -0
  38. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/delay.rst +0 -0
  39. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/disease.rst +0 -0
  40. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/index.rst +0 -0
  41. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/intervention.rst +0 -0
  42. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/magic_wand_components.rst +0 -0
  43. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/observer.rst +0 -0
  44. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/mslt/population.rst +0 -0
  45. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/plugins/index.rst +0 -0
  46. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/plugins/parser.rst +0 -0
  47. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/population/add_new_birth_cohorts.rst +0 -0
  48. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/population/base_population.rst +0 -0
  49. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/population/data_transformations.rst +0 -0
  50. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/population/index.rst +0 -0
  51. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/population/mortality.rst +0 -0
  52. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/disability.rst +0 -0
  53. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/disease.rst +0 -0
  54. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/index.rst +0 -0
  55. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/mortality.rst +0 -0
  56. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/observer.rst +0 -0
  57. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/risk.rst +0 -0
  58. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/simple_cause.rst +0 -0
  59. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/results/stratification.rst +0 -0
  60. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/base_risk.rst +0 -0
  61. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/data_transformations.rst +0 -0
  62. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/distributions.rst +0 -0
  63. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/effect.rst +0 -0
  64. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/implementations/index.rst +0 -0
  65. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/implementations/low_birth_weight_and_short_gestation.rst +0 -0
  66. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/risks/index.rst +0 -0
  67. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/treatment/index.rst +0 -0
  68. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/treatment/magic_wand.rst +0 -0
  69. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/treatment/scale_up.rst +0 -0
  70. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/treatment/therapeutic_inertia.rst +0 -0
  71. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/api_reference/utilities.rst +0 -0
  72. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/conf.py +0 -0
  73. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/index.rst +0 -0
  74. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/tutorials/index.rst +0 -0
  75. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/docs/source/tutorials/risk_exposure.rst +0 -0
  76. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/pyproject.toml +0 -0
  77. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/setup.cfg +0 -0
  78. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/setup.py +0 -0
  79. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/__about__.py +0 -0
  80. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/__init__.py +0 -0
  81. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/__init__.py +0 -0
  82. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/model.py +0 -0
  83. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/models.py +0 -0
  84. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/special_disease.py +0 -0
  85. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/state.py +0 -0
  86. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/disease/transition.py +0 -0
  87. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/__init__.py +0 -0
  88. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/delay.py +0 -0
  89. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/disease.py +0 -0
  90. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/intervention.py +0 -0
  91. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/magic_wand_components.py +0 -0
  92. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/observer.py +0 -0
  93. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/mslt/population.py +0 -0
  94. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/plugins/__init__.py +0 -0
  95. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/plugins/parser.py +0 -0
  96. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/population/__init__.py +0 -0
  97. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/population/add_new_birth_cohorts.py +0 -0
  98. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/population/base_population.py +0 -0
  99. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/population/data_transformations.py +0 -0
  100. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/population/mortality.py +0 -0
  101. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/__init__.py +0 -0
  102. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/columns.py +0 -0
  103. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/disability.py +0 -0
  104. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/disease.py +0 -0
  105. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/mortality.py +0 -0
  106. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/observer.py +0 -0
  107. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/risk.py +0 -0
  108. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/simple_cause.py +0 -0
  109. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/results/stratification.py +0 -0
  110. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/__init__.py +0 -0
  111. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/base_risk.py +0 -0
  112. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/data_transformations.py +0 -0
  113. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/distributions.py +0 -0
  114. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/effect.py +0 -0
  115. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/implementations/__init__.py +0 -0
  116. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py +0 -0
  117. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/treatment/__init__.py +0 -0
  118. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/treatment/magic_wand.py +0 -0
  119. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/treatment/therapeutic_inertia.py +0 -0
  120. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/utilities.py +0 -0
  121. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/dependency_links.txt +0 -0
  122. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/not-zip-safe +0 -0
  123. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/requires.txt +0 -0
  124. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/top_level.txt +0 -0
  125. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/__init__.py +0 -0
  126. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/conftest.py +0 -0
  127. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/disease/__init__.py +0 -0
  128. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/disease/test_disease.py +0 -0
  129. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/disease/test_special_disease.py +0 -0
  130. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/mock_artifact.py +0 -0
  131. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/plugins/__init__.py +0 -0
  132. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/plugins/test_parser.py +0 -0
  133. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/__init__.py +0 -0
  134. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/conftest.py +0 -0
  135. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/test_add_new_birth_cohort.py +0 -0
  136. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/test_base_population.py +0 -0
  137. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/test_data_transformations.py +0 -0
  138. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/population/test_mortality.py +0 -0
  139. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/__init__.py +0 -0
  140. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_categorical_risk_observer.py +0 -0
  141. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_disability.py +0 -0
  142. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_disability_observer.py +0 -0
  143. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_disease_observer.py +0 -0
  144. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_mortality_observer.py +0 -0
  145. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/results/test_stratification.py +0 -0
  146. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/__init__.py +0 -0
  147. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/conftest.py +0 -0
  148. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/test_base_risk.py +0 -0
  149. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/test_data_transformations.py +0 -0
  150. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/test_distributions.py +0 -0
  151. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/test_effect.py +0 -0
  152. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/risks/test_low_birth_weight_and_short_gestation.py +0 -0
  153. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/test_utilities.py +0 -0
  154. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tests/treatment/__init__.py +0 -0
  155. {vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/tox.ini +0 -0
{vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/CHANGELOG.rst RENAMED
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+ **3.0.9 - 09/12/24**
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+ - Fix broken import in scale_up module
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  **3.0.8 - 09/12/24**
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  - Fix broken tests in RiskAttributableDisease due to changes in how to set population_view
{vivarium_public_health-3.0.8/src/vivarium_public_health.egg-info → vivarium_public_health-3.0.9}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: vivarium_public_health
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- Version: 3.0.8
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+ Version: 3.0.9
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  Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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  Home-page: https://github.com/ihmeuw/vivarium_public_health
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  Author: The vivarium developers
vivarium_public_health-3.0.9/src/vivarium_public_health/_version.py ADDED
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{vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health/treatment/scale_up.py RENAMED
@@ -13,8 +13,8 @@ import pandas as pd
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  from vivarium import Component
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  from vivarium.framework.engine import Builder
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  from vivarium.framework.lookup import LookupTable
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- from vivarium.framework.time import Time
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  from vivarium.framework.values import Pipeline
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+ from vivarium.types import Time
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  from vivarium_public_health.utilities import EntityString
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{vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9/src/vivarium_public_health.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: vivarium_public_health
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- Version: 3.0.8
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+ Version: 3.0.9
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  Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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  Home-page: https://github.com/ihmeuw/vivarium_public_health
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  Author: The vivarium developers
{vivarium_public_health-3.0.8 → vivarium_public_health-3.0.9}/src/vivarium_public_health.egg-info/SOURCES.txt RENAMED
@@ -148,4 +148,5 @@ tests/risks/test_data_transformations.py
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  tests/risks/test_distributions.py
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  tests/risks/test_effect.py
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  tests/risks/test_low_birth_weight_and_short_gestation.py
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- tests/treatment/__init__.py
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+ tests/treatment/__init__.py
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+ tests/treatment/test_scale_up.py
vivarium_public_health-3.0.9/tests/treatment/test_scale_up.py ADDED
@@ -0,0 +1,7 @@
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+ from vivarium_public_health.treatment import LinearScaleUp
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+
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+
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+ def test_linear_scale_up_instantiation():
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+ scale_up = LinearScaleUp("treatment.sqlns")
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+
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+ assert scale_up.treatment == "treatment.sqlns"
vivarium_public_health-3.0.8/src/vivarium_public_health/_version.py DELETED
@@ -1 +0,0 @@
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- __version__ = "3.0.8"