vivarium-public-health 2.1.4__tar.gz → 2.2.0__tar.gz

vivarium_public_health-2.2.0/.github/CODEOWNERS

@@ -0,0 +1,2 @@
+# default owners
+* @albrja @collijk @hussain-jafari @patricktnast @rmudambi @stevebachmeier

{vivarium_public_health-2.1.4 → vivarium_public_health-2.2.0}/CHANGELOG.rst

@@ -1,3 +1,8 @@
+**2.2.0 - 02/14/24**
+
+ - Implement CausesConfigurationParser to parse causes configuration into DiseaseModel components
+ - Bugfix assign sex-location-age demographic proportions by year when only one year in dataset
+ 
 **2.1.4 - 01/10/24**
 
  - Exclude undesirable arguments from the return of `BaseDiseaseState` `name` and `__repr__` methods

{vivarium_public_health-2.1.4 → vivarium_public_health-2.2.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: vivarium_public_health
-Version: 2.1.4
+Version: 2.2.0
 Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
 Home-page: https://github.com/ihmeuw/vivarium_public_health
 Author: The vivarium developers
@@ -27,6 +27,7 @@ Classifier: Topic :: Scientific/Engineering :: Physics
 Classifier: Topic :: Software Development :: Libraries
 License-File: LICENSE.txt
 Requires-Dist: vivarium>=2.0.0
+Requires-Dist: loguru
 Requires-Dist: numpy
 Requires-Dist: pandas
 Requires-Dist: scipy
@@ -42,6 +43,7 @@ Provides-Extra: test
 Requires-Dist: pytest; extra == "test"
 Requires-Dist: pytest-mock; extra == "test"
 Requires-Dist: hypothesis; extra == "test"
+Requires-Dist: pyyaml; extra == "test"
 Provides-Extra: dev
 Requires-Dist: sphinx<7.0; extra == "dev"
 Requires-Dist: sphinx-rtd-theme; extra == "dev"
@@ -51,6 +53,7 @@ Requires-Dist: matplotlib; extra == "dev"
 Requires-Dist: pytest; extra == "dev"
 Requires-Dist: pytest-mock; extra == "dev"
 Requires-Dist: hypothesis; extra == "dev"
+Requires-Dist: pyyaml; extra == "dev"
 
 Vivarium Public Health
 ======================

vivarium_public_health-2.2.0/docs/source/api_reference/plugins/index.rst

@@ -0,0 +1,11 @@
+===============
+Manager Plugins
+===============
+
+.. automodule:: vivarium_public_health.plugins
+
+.. toctree::
+   :maxdepth: 2
+   :glob:
+
+   *

vivarium_public_health-2.2.0/docs/source/api_reference/plugins/parser.rst

@@ -0,0 +1 @@
+.. automodule:: vivarium_public_health.plugins.parser

{vivarium_public_health-2.1.4 → vivarium_public_health-2.2.0}/setup.py

@@ -16,6 +16,7 @@ if __name__ == "__main__":
 
     install_requirements = [
         "vivarium>=2.0.0",
+        "loguru",
         "numpy",
         "pandas",
         "scipy",
@@ -29,6 +30,7 @@ if __name__ == "__main__":
         "pytest",
         "pytest-mock",
         "hypothesis",
+        "pyyaml",
     ]
 
     doc_requirements = [

vivarium_public_health-2.2.0/src/vivarium_public_health/_version.py

@@ -0,0 +1 @@
+__version__ = "2.2.0"

vivarium_public_health-2.2.0/src/vivarium_public_health/plugins/__init__.py

@@ -0,0 +1 @@
+from vivarium_public_health.plugins.parser import CausesConfigurationParser