vivarium-engine 5.0.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- vivarium_engine-5.0.0/.readthedocs.yaml +27 -0
- vivarium_engine-5.0.0/.zenodo.json +67 -0
- vivarium_engine-5.0.0/CHANGELOG.rst +1098 -0
- vivarium_engine-5.0.0/Jenkinsfile +40 -0
- vivarium_engine-5.0.0/LICENSE +27 -0
- vivarium_engine-5.0.0/Makefile +92 -0
- vivarium_engine-5.0.0/PKG-INFO +108 -0
- vivarium_engine-5.0.0/README.rst +55 -0
- vivarium_engine-5.0.0/docs/Makefile +19 -0
- vivarium_engine-5.0.0/docs/nitpick-exceptions +83 -0
- vivarium_engine-5.0.0/docs/source/_static/boids.mp4 +0 -0
- vivarium_engine-5.0.0/docs/source/_static/style.css +3 -0
- vivarium_engine-5.0.0/docs/source/api_reference/component.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/artifact/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/artifact/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/artifact/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/components/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/components/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/components/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/components/parser.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/configuration.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/engine.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/event/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/event/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/event/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/index.rst +12 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/constraint_maker.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/entities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/lifecycle_states.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lifecycle/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/logging/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/logging/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/logging/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/logging/utilities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lookup/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lookup/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lookup/interpolation.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lookup/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/lookup/table.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/plugins.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/population_view.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/population/utilities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/index_map.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/randomness/stream.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/resource/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/resource/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/resource/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/resource/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/resource/resource.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/context.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/observation.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/observer.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/results/stratification.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/state_machine.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/time/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/time/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/time/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/utilities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/combiners.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/exceptions.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/interface.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/pipeline.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/framework/values/post_processors.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/interface/cli.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/interface/index.rst +11 -0
- vivarium_engine-5.0.0/docs/source/api_reference/interface/interactive.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/interface/utilities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/manager.rst +1 -0
- vivarium_engine-5.0.0/docs/source/api_reference/testing_utilities.rst +1 -0
- vivarium_engine-5.0.0/docs/source/concepts/builder.rst +59 -0
- vivarium_engine-5.0.0/docs/source/concepts/components.rst +24 -0
- vivarium_engine-5.0.0/docs/source/concepts/configuration.rst +16 -0
- vivarium_engine-5.0.0/docs/source/concepts/crn.rst +223 -0
- vivarium_engine-5.0.0/docs/source/concepts/data.rst +17 -0
- vivarium_engine-5.0.0/docs/source/concepts/entry_points.rst +136 -0
- vivarium_engine-5.0.0/docs/source/concepts/event.rst +177 -0
- vivarium_engine-5.0.0/docs/source/concepts/index.rst +14 -0
- vivarium_engine-5.0.0/docs/source/concepts/interpolation.rst +9 -0
- vivarium_engine-5.0.0/docs/source/concepts/lifecycle.rst +201 -0
- vivarium_engine-5.0.0/docs/source/concepts/logging.rst +9 -0
- vivarium_engine-5.0.0/docs/source/concepts/lookup.rst +346 -0
- vivarium_engine-5.0.0/docs/source/concepts/model_specification/index.rst +127 -0
- vivarium_engine-5.0.0/docs/source/concepts/model_specification/yaml_basics.rst +148 -0
- vivarium_engine-5.0.0/docs/source/concepts/population.rst +223 -0
- vivarium_engine-5.0.0/docs/source/concepts/resource.rst +9 -0
- vivarium_engine-5.0.0/docs/source/concepts/results.rst +410 -0
- vivarium_engine-5.0.0/docs/source/concepts/time.rst +76 -0
- vivarium_engine-5.0.0/docs/source/concepts/values.rst +167 -0
- vivarium_engine-5.0.0/docs/source/conf.py +146 -0
- vivarium_engine-5.0.0/docs/source/glossary.rst +76 -0
- vivarium_engine-5.0.0/docs/source/images/crn_compare_cubes.jpg +0 -0
- vivarium_engine-5.0.0/docs/source/images/crn_cube.jpg +0 -0
- vivarium_engine-5.0.0/docs/source/images/crn_sim_alignment.jpg +0 -0
- vivarium_engine-5.0.0/docs/source/images/pipeline.jpg +0 -0
- vivarium_engine-5.0.0/docs/source/index.rst +21 -0
- vivarium_engine-5.0.0/docs/source/installation.rst +65 -0
- vivarium_engine-5.0.0/docs/source/tutorials/boids.rst +632 -0
- vivarium_engine-5.0.0/docs/source/tutorials/disease_model.rst +1010 -0
- vivarium_engine-5.0.0/docs/source/tutorials/exploration.rst +401 -0
- vivarium_engine-5.0.0/docs/source/tutorials/getting_started.rst +95 -0
- vivarium_engine-5.0.0/docs/source/tutorials/index.rst +18 -0
- vivarium_engine-5.0.0/docs/source/tutorials/running_a_simulation/cli.rst +126 -0
- vivarium_engine-5.0.0/docs/source/tutorials/running_a_simulation/index.rst +17 -0
- vivarium_engine-5.0.0/docs/source/tutorials/running_a_simulation/interactive.rst +412 -0
- vivarium_engine-5.0.0/pyproject.toml +143 -0
- vivarium_engine-5.0.0/python_versions.json +1 -0
- vivarium_engine-5.0.0/setup.cfg +4 -0
- vivarium_engine-5.0.0/src/vivarium/__init__.py +75 -0
- vivarium_engine-5.0.0/src/vivarium/engine/__init__.py +58 -0
- vivarium_engine-5.0.0/src/vivarium/engine/component.py +701 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/__init__.py +0 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/__init__.py +5 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/forces.py +184 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/movement.py +104 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/neighbors.py +70 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/population.py +52 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/boids/visualization.py +50 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/__init__.py +24 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/disease.py +241 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/disease_model.yaml +45 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/intervention.py +57 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/mortality.py +104 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/observer.py +82 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/population.py +182 -0
- vivarium_engine-5.0.0/src/vivarium/engine/examples/disease_model/risk.py +147 -0
- vivarium_engine-5.0.0/src/vivarium/engine/exceptions.py +15 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/__init__.py +0 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/artifact/__init__.py +9 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/artifact/interface.py +59 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/artifact/manager.py +217 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/components/__init__.py +7 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/components/interface.py +118 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/components/manager.py +371 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/components/parser.py +282 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/configuration.py +97 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/engine.py +450 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/event/__init__.py +2 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/event/interface.py +92 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/event/manager.py +276 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/__init__.py +36 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/constraint_maker.py +150 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/entities.py +275 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/exceptions.py +29 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/interface.py +87 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/lifecycle_states.py +39 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lifecycle/manager.py +191 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/logging/__init__.py +14 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/logging/interface.py +25 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/logging/manager.py +50 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/logging/utilities.py +164 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lookup/__init__.py +4 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lookup/interface.py +95 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lookup/interpolation.py +384 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lookup/manager.py +163 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/lookup/table.py +292 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/plugins.py +269 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/__init__.py +17 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/exceptions.py +15 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/interface.py +124 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/manager.py +798 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/population_view.py +688 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/population/utilities.py +45 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/__init__.py +36 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/exceptions.py +16 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/index_map.py +270 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/interface.py +85 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/manager.py +250 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/randomness/stream.py +515 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/resource/__init__.py +25 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/resource/exceptions.py +7 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/resource/interface.py +91 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/resource/manager.py +207 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/resource/resource.py +159 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/__init__.py +4 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/context.py +479 -0
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- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/manager.py +414 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/observation.py +560 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/observer.py +79 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/results/stratification.py +166 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/state_machine.py +682 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/time/__init__.py +7 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/time/interface.py +75 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/time/manager.py +300 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/utilities.py +250 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/__init__.py +37 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/combiners.py +138 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/exceptions.py +7 -0
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- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/manager.py +462 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/pipeline.py +395 -0
- vivarium_engine-5.0.0/src/vivarium/engine/framework/values/post_processors.py +185 -0
- vivarium_engine-5.0.0/src/vivarium/engine/interface/__init__.py +1 -0
- vivarium_engine-5.0.0/src/vivarium/engine/interface/cli.py +169 -0
- vivarium_engine-5.0.0/src/vivarium/engine/interface/interactive.py +326 -0
- vivarium_engine-5.0.0/src/vivarium/engine/interface/utilities.py +166 -0
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- vivarium_engine-5.0.0/src/vivarium/engine/py.typed +1 -0
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- vivarium_engine-5.0.0/src/vivarium/engine/types.py +47 -0
- vivarium_engine-5.0.0/src/vivarium_engine.egg-info/PKG-INFO +108 -0
- vivarium_engine-5.0.0/src/vivarium_engine.egg-info/SOURCES.txt +282 -0
- vivarium_engine-5.0.0/src/vivarium_engine.egg-info/dependency_links.txt +1 -0
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- vivarium_engine-5.0.0/tests/examples/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/examples/test_boids_model.py +7 -0
- vivarium_engine-5.0.0/tests/examples/test_disease_model.py +111 -0
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- vivarium_engine-5.0.0/tests/framework/lookup/__init__.py +0 -0
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- vivarium_engine-5.0.0/tests/framework/lookup/test_lookup.py +868 -0
- vivarium_engine-5.0.0/tests/framework/population/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/framework/population/conftest.py +101 -0
- vivarium_engine-5.0.0/tests/framework/population/helpers.py +53 -0
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- vivarium_engine-5.0.0/tests/framework/population/test_population_view.py +1126 -0
- vivarium_engine-5.0.0/tests/framework/population/test_utilities.py +100 -0
- vivarium_engine-5.0.0/tests/framework/randomness/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/framework/randomness/conftest.py +35 -0
- vivarium_engine-5.0.0/tests/framework/randomness/test_crn.py +349 -0
- vivarium_engine-5.0.0/tests/framework/randomness/test_index_map.py +224 -0
- vivarium_engine-5.0.0/tests/framework/randomness/test_manager.py +164 -0
- vivarium_engine-5.0.0/tests/framework/randomness/test_reproducibility.py +33 -0
- vivarium_engine-5.0.0/tests/framework/randomness/test_stream.py +365 -0
- vivarium_engine-5.0.0/tests/framework/resource/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/framework/resource/test_interface.py +42 -0
- vivarium_engine-5.0.0/tests/framework/resource/test_manager.py +243 -0
- vivarium_engine-5.0.0/tests/framework/resource/test_resource.py +7 -0
- vivarium_engine-5.0.0/tests/framework/results/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/framework/results/helpers.py +362 -0
- vivarium_engine-5.0.0/tests/framework/results/test_context.py +850 -0
- vivarium_engine-5.0.0/tests/framework/results/test_interface.py +525 -0
- vivarium_engine-5.0.0/tests/framework/results/test_manager.py +884 -0
- vivarium_engine-5.0.0/tests/framework/results/test_observation.py +286 -0
- vivarium_engine-5.0.0/tests/framework/results/test_observer.py +98 -0
- vivarium_engine-5.0.0/tests/framework/results/test_stratification.py +218 -0
- vivarium_engine-5.0.0/tests/framework/test_configuration.py +131 -0
- vivarium_engine-5.0.0/tests/framework/test_engine.py +568 -0
- vivarium_engine-5.0.0/tests/framework/test_event.py +146 -0
- vivarium_engine-5.0.0/tests/framework/test_lifecycle.py +438 -0
- vivarium_engine-5.0.0/tests/framework/test_plugins.py +143 -0
- vivarium_engine-5.0.0/tests/framework/test_state_machine.py +248 -0
- vivarium_engine-5.0.0/tests/framework/test_time.py +569 -0
- vivarium_engine-5.0.0/tests/framework/test_utilities.py +169 -0
- vivarium_engine-5.0.0/tests/framework/test_values.py +1191 -0
- vivarium_engine-5.0.0/tests/helpers.py +476 -0
- vivarium_engine-5.0.0/tests/interface/__init__.py +0 -0
- vivarium_engine-5.0.0/tests/interface/test_cli.py +73 -0
- vivarium_engine-5.0.0/tests/interface/test_interactive.py +368 -0
- vivarium_engine-5.0.0/tests/interface/test_utilities.py +73 -0
- vivarium_engine-5.0.0/tests/test_data/bad_model_specification.txt +17 -0
- vivarium_engine-5.0.0/tests/test_data/mock_model_specification.yaml +17 -0
- vivarium_engine-5.0.0/tests/test_data/mock_model_specification.yml +17 -0
- vivarium_engine-5.0.0/tests/test_data/mock_user_config.yaml +2 -0
- vivarium_engine-5.0.0/tests/test_data/mock_user_config.yml +2 -0
- vivarium_engine-5.0.0/tests/test_package.py +213 -0
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# Paths are repo-root-relative even when this file lives in a subdirectory,
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# so the package path must be qualified with libs/engine/.
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#
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# This file is read by RTD only when the vivarium-engine RTD project's
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# Admin > Advanced Settings > "Path for .readthedocs.yaml" points here. The
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version: 2
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sphinx:
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configuration: libs/engine/docs/source/conf.py
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build:
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os: ubuntu-22.04
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tools:
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python:
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{
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"license": "BSD-3-Clause",
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"title": "ihmeuw/vivarium: Archival release",
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"upload_type": "software",
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"creators": [
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"orcid": "0000-0001-7633-7804",
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"orcid": "0000-0001-8649-7561",
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"orcid": "0000-0003-0778-295X",
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"name": "Kjell Swedin"
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"affiliation": "University of Melbourne",
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"affiliation": "Institute for Health Metrics and Evaluation",
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"affiliation": "Institute for Health Metrics and Evaluation",
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"affiliation": "Institute for Health Metrics and Evaluation",
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"affiliation": "Institute for Health Metrics and Evaluation",
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"name": "Reed Sorensen"
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"orcid": "0000-0003-2430-5661",
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"affiliation": "Institute for Health Metrics and Evaluation",
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"name": "Matthew Kappel"
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"access_right": "open",
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"description": "Vivarium is a simulation framework written using standard scientific Python tools."
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}
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