virtual-casing 0.2.2__tar.gz → 0.3.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (894) hide show
  1. virtual_casing-0.3.1/.github/workflows/test.yml +152 -0
  2. virtual_casing-0.3.1/.github/workflows/wheel.yml +138 -0
  3. virtual_casing-0.3.1/CITATION.cff +119 -0
  4. virtual_casing-0.3.1/CMakeLists.txt +169 -0
  5. virtual_casing-0.3.1/MANIFEST.in +9 -0
  6. virtual_casing-0.3.1/Makefile +110 -0
  7. virtual_casing-0.3.1/NOTICE +38 -0
  8. virtual_casing-0.3.1/PKG-INFO +144 -0
  9. virtual_casing-0.3.1/README.md +116 -0
  10. virtual_casing-0.3.1/extern/BIEST/CITATION.cff +87 -0
  11. virtual_casing-0.3.1/extern/BIEST/Makefile +100 -0
  12. virtual_casing-0.3.1/extern/BIEST/NOTICE +27 -0
  13. virtual_casing-0.3.1/extern/BIEST/README.md +11 -0
  14. virtual_casing-0.3.1/extern/BIEST/applications/virtual-casing/virtual-casing.cpp +454 -0
  15. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/.github/run-tests.sh +17 -0
  16. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/.github/workflows/build-test.yml +190 -0
  17. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/.github/workflows/codecov.yml +41 -0
  18. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/CITATION.cff +85 -0
  19. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/Makefile +194 -0
  20. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/NOTICE +44 -0
  21. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/README.md +126 -0
  22. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/ackn.rst +13 -0
  23. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/convergence.svg +621 -0
  24. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/cubed-sphere.svg +728 -0
  25. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/near-1-foot.svg +77 -0
  26. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/near-2-split.svg +65 -0
  27. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/near-3-bisect.svg +146 -0
  28. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/near-4-order.svg +191 -0
  29. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/near-5-pipeline.svg +545 -0
  30. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/scaling.svg +300 -0
  31. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/self-1-split.svg +188 -0
  32. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/self-2-collapse.svg +251 -0
  33. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/self-3-rules.svg +299 -0
  34. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/self-4-pipeline.svg +533 -0
  35. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/Makefile +16 -0
  36. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/convergence.tex +29 -0
  37. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/cubed-sphere.tex +228 -0
  38. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/convergence-genoa.dat +5 -0
  39. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/genoa-96.txt +140 -0
  40. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/icelake-64.txt +134 -0
  41. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/rome-128.txt +140 -0
  42. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/scaling-genoa-laplace.dat +9 -0
  43. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/scaling-genoa-stokes.dat +9 -0
  44. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/data/scaling-mpi-tol1e-3-genoa-96-7204544.txt +338 -0
  45. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/near-1-foot.tex +24 -0
  46. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/near-2-split.tex +28 -0
  47. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/near-3-bisect.tex +32 -0
  48. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/near-4-order.tex +26 -0
  49. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/near-5-pipeline.tex +32 -0
  50. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/results.py +188 -0
  51. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/scaling.tex +24 -0
  52. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/self-1-split.tex +38 -0
  53. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/self-2-collapse.tex +39 -0
  54. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/self-3-rules.tex +29 -0
  55. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element/src/self-4-pipeline.tex +30 -0
  56. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/algorithms/quad-element.rst +404 -0
  57. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/conf.py +215 -0
  58. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/boundary_integral.rst +88 -0
  59. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/cheb_utils.rst +13 -0
  60. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/comm.rst +110 -0
  61. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/common.rst +91 -0
  62. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/fft_wrapper.rst +46 -0
  63. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/fmm-wrapper.rst +51 -0
  64. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/generic-kernel.rst +45 -0
  65. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/index.rst +59 -0
  66. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/iterator.rst +105 -0
  67. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/kernel_functions.rst +41 -0
  68. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/lagrange-interp.rst +37 -0
  69. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/lin-solve.rst +76 -0
  70. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/mat_utils.rst +13 -0
  71. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/math_utils.rst +92 -0
  72. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/matrix.rst +86 -0
  73. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/mem_mgr.rst +42 -0
  74. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/morton.rst +50 -0
  75. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/ode-solver.rst +49 -0
  76. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/ompUtils.rst +49 -0
  77. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/permutation.rst +70 -0
  78. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/profile.rst +62 -0
  79. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/quadrule.rst +63 -0
  80. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/scratch_pool.rst +86 -0
  81. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/sph_harm.rst +13 -0
  82. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/stacktrace.rst +21 -0
  83. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/static-array.rst +59 -0
  84. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/tensor.rst +76 -0
  85. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/tree.rst +95 -0
  86. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/vec.rst +76 -0
  87. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/vector.rst +100 -0
  88. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/doxygen/vtudata.rst +47 -0
  89. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/index.rst +187 -0
  90. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/robots.txt +196 -0
  91. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/boundaryintegralop.rst +129 -0
  92. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/comm.rst +125 -0
  93. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/fft.rst +124 -0
  94. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/fmm.rst +113 -0
  95. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/gmres.rst +152 -0
  96. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/index.rst +95 -0
  97. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/interp-quadrule.rst +71 -0
  98. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/kernels.rst +91 -0
  99. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/lagrange-interp.rst +122 -0
  100. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/matrix.rst +57 -0
  101. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/permutation.rst +44 -0
  102. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/profile.rst +90 -0
  103. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/sdc.rst +76 -0
  104. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/tensor.rst +80 -0
  105. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/tree.rst +176 -0
  106. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/vec.rst +125 -0
  107. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/vector.rst +77 -0
  108. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/doc/tutorial/vtudata.rst +91 -0
  109. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/blas.h +74 -0
  110. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/boundary_integral.hpp +522 -0
  111. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/boundary_integral.txx +1436 -0
  112. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/cheb_utils.hpp +1388 -0
  113. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/comm.hpp +849 -0
  114. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/comm.txx +2928 -0
  115. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/common.hpp +127 -0
  116. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/alpert_quadr.cpp +173 -0
  117. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/alpert_quadr.hpp +63 -0
  118. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/device_scratch.hpp +245 -0
  119. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/device_scratch.txx +480 -0
  120. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/gpu-tree.hpp +437 -0
  121. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/gpu-tree.txx +2646 -0
  122. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/gpu-vector.hpp +90 -0
  123. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/quad_element.cpp +2368 -0
  124. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/quad_element.hpp +264 -0
  125. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/sort-scatter.hpp +149 -0
  126. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/experimental/sort-scatter.txx +387 -0
  127. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/fft_wrapper.hpp +138 -0
  128. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/fft_wrapper.txx +1245 -0
  129. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/fmm-wrapper.hpp +270 -0
  130. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/fmm-wrapper.txx +1135 -0
  131. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/function-table.hpp +68 -0
  132. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/function-table.txx +388 -0
  133. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/generic-kernel.hpp +168 -0
  134. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/generic-kernel.txx +348 -0
  135. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/intrin-wrapper.hpp +967 -0
  136. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/intrin-wrapper.txx +8338 -0
  137. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/iterator.hpp +307 -0
  138. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/iterator.txx +189 -0
  139. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/kernel_functions.hpp +704 -0
  140. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/lagrange-interp.hpp +64 -0
  141. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/lagrange-interp.txx +180 -0
  142. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/lapack.h +78 -0
  143. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/lin-solve.hpp +165 -0
  144. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/lin-solve.txx +536 -0
  145. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/mat_utils.hpp +26 -0
  146. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/mat_utils.txx +550 -0
  147. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/math_utils.hpp +566 -0
  148. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/math_utils.txx +795 -0
  149. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/matrix.hpp +475 -0
  150. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/matrix.txx +624 -0
  151. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/mem_mgr.hpp +134 -0
  152. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/mem_mgr.txx +541 -0
  153. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/morton.hpp +392 -0
  154. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/morton.txx +603 -0
  155. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/ode-solver.hpp +138 -0
  156. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/ode-solver.txx +323 -0
  157. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/ompUtils.hpp +289 -0
  158. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/ompUtils.txx +613 -0
  159. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/permutation.hpp +166 -0
  160. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/permutation.txx +151 -0
  161. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/profile.hpp +237 -0
  162. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/profile.txx +650 -0
  163. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/quadrule.hpp +205 -0
  164. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/quadrule.txx +596 -0
  165. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/scratch_pool.hpp +221 -0
  166. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/scratch_pool.txx +315 -0
  167. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/small_gemm.hpp +90 -0
  168. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/small_gemm.txx +518 -0
  169. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/sort-scatter.hpp +161 -0
  170. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/sort-scatter.txx +416 -0
  171. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/sph_harm.hpp +334 -0
  172. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/sph_harm.txx +3826 -0
  173. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/sse2neon.h +9305 -0
  174. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/stacktrace.h +215 -0
  175. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/static-array.hpp +234 -0
  176. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/static-array.txx +112 -0
  177. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/tensor.hpp +315 -0
  178. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/tensor.txx +348 -0
  179. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/tree.hpp +351 -0
  180. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/tree.txx +1969 -0
  181. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vec-test.hpp +1533 -0
  182. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vec.hpp +909 -0
  183. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vec.txx +908 -0
  184. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vector.hpp +441 -0
  185. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vector.txx +453 -0
  186. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vtudata.hpp +58 -0
  187. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl/vtudata.txx +209 -0
  188. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/include/sctl.hpp +121 -0
  189. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/bench-cubed-sphere.cpp +477 -0
  190. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/example-gpu-tree.cu +27 -0
  191. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-boundary_integral.cpp +99 -0
  192. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-cheb_utils.cpp +133 -0
  193. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-comm.cpp +468 -0
  194. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-device-scratch.cu +129 -0
  195. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-fft-fallback.cpp +460 -0
  196. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-fft.cpp +15 -0
  197. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-fmm.cpp +59 -0
  198. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-function-table.cpp +92 -0
  199. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-generic-kernel.cpp +110 -0
  200. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-gmres.cpp +14 -0
  201. virtual_casing-0.3.1/extern/BIEST/extern/SCTL/src/test-gpu-sort-scatter.cu +36 -0
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  872. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/extern/SCTL/doc/Makefile +0 -0
  873. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/extern/SCTL/doc/requirements.txt +0 -0
  874. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/extern/SCTL/doc/tutorial/gmres-rsult.txt +0 -0
  875. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/LHD-X.mat +0 -0
  876. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/LHD-Y.mat +0 -0
  877. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/LHD-Z.mat +0 -0
  878. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/NCSX +0 -0
  879. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/Quas3-X.mat +0 -0
  880. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/Quas3-Y.mat +0 -0
  881. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/Quas3-Z.mat +0 -0
  882. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/W7X-X.mat +0 -0
  883. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/W7X-Y.mat +0 -0
  884. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/BIEST/geom/W7X-Z.mat +0 -0
  885. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/.clang-format +0 -0
  886. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/.gitattributes +0 -0
  887. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/.gitignore +0 -0
  888. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/.readthedocs.yaml +0 -0
  889. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/LICENSE +0 -0
  890. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/doc/Doxyfile +0 -0
  891. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/doc/Makefile +0 -0
  892. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/doc/requirements.txt +0 -0
  893. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/extern/SCTL/doc/tutorial/gmres-rsult.txt +0 -0
  894. {virtual_casing-0.2.2 → virtual_casing-0.3.1}/src/py.typed +0 -0
@@ -0,0 +1,152 @@
1
+ # This file is based on examples in
2
+ # https://docs.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions
3
+
4
+ # Note that all the "sudo" commands here appear to cause a warning message
5
+ # "sudo: setrlimit(RLIMIT_CORE): operation not permitted"
6
+ # This appears to be a known harmless annoyance:
7
+ # https://gitlab.alpinelinux.org/alpine/aports/-/issues/11122
8
+
9
+ name: Test
10
+
11
+ on: [push, pull_request, workflow_dispatch]
12
+
13
+ concurrency:
14
+ group: ${{ github.workflow }}-${{ github.ref }}
15
+ cancel-in-progress: true
16
+
17
+ jobs:
18
+ test:
19
+ runs-on: ubuntu-latest
20
+
21
+ env:
22
+ OMPI_ALLOW_RUN_AS_ROOT: 1
23
+ OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
24
+
25
+ strategy:
26
+ fail-fast: false
27
+ matrix:
28
+ python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] # To sync with coveragerc use 3 level
29
+
30
+ steps:
31
+ # First print out lots of information. We do this in separate
32
+ # "name" blocks because otherwise the output gets mixed together
33
+ # in the github actions log.
34
+
35
+ - name: Print user and group id
36
+ run: set -ex && id
37
+
38
+ - name: PWD
39
+ run: set -ex && pwd
40
+
41
+ - name: ls -l
42
+ run: set -ex && ls -l
43
+
44
+ - name: apt-get stuff needed for compiling
45
+ run: |
46
+ sudo apt-get update
47
+ sudo apt-get install -y build-essential liblapack-dev git m4 libfftw3-dev libopenblas-dev
48
+
49
+ - uses: actions/checkout@v7
50
+ with:
51
+ submodules: recursive
52
+ fetch-depth: 0 # setuptools_scm needs the tags
53
+
54
+ - name: Set up Python ${{ matrix.python-version }}
55
+ uses: actions/setup-python@v7
56
+ with:
57
+ python-version: ${{ matrix.python-version }}
58
+
59
+ - name: which python after python setup
60
+ run: |
61
+ which python
62
+ python --version
63
+
64
+ - name: Ensure pip is installed
65
+ run: |
66
+ python -m ensurepip --upgrade
67
+ python -m pip install --upgrade pip
68
+
69
+ - name: Verify pip
70
+ run: python -m pip --version
71
+
72
+ - name: Install python dependencies
73
+ run: |
74
+ python -m pip install wheel numpy cmake ninja scipy
75
+
76
+ - name: Install virtual-casing package
77
+ run: python -m pip install -v .
78
+
79
+ - name: Run tests
80
+ run: |
81
+ cd test
82
+ python -m unittest -v test.py
83
+
84
+ # The Makefile builds the C API and the standalone binaries, which nothing
85
+ # else in CI covers; a link-order bug went unnoticed here for some time.
86
+ makefile:
87
+ runs-on: ubuntu-latest
88
+
89
+ steps:
90
+ - uses: actions/checkout@v7
91
+ with:
92
+ submodules: recursive
93
+ fetch-depth: 0 # setuptools_scm needs the tags
94
+
95
+ - name: apt-get stuff needed for compiling
96
+ run: |
97
+ sudo apt-get update
98
+ # liblapack-dev pulls a libblas.so provider, so -lblas/-llapack resolve
99
+ sudo apt-get install -y build-essential libfftw3-dev liblapack-dev libopenblas-dev
100
+
101
+ - name: make all
102
+ run: make all -j$(nproc)
103
+
104
+ - name: Run the C API test
105
+ run: ./bin/virtual-casing-c
106
+
107
+
108
+ # A stale .pyi is worse than none: type checkers report errors that are not
109
+ # real. Regenerate and fail if it differs from what is committed.
110
+ stubs:
111
+ runs-on: ubuntu-latest
112
+
113
+ steps:
114
+ - uses: actions/checkout@v7
115
+ with:
116
+ submodules: recursive
117
+ fetch-depth: 0 # setuptools_scm needs the tags
118
+
119
+ - name: apt-get stuff needed for compiling
120
+ run: |
121
+ sudo apt-get update
122
+ sudo apt-get install -y build-essential libfftw3-dev liblapack-dev libopenblas-dev
123
+
124
+ - uses: actions/setup-python@v7
125
+ with:
126
+ python-version: '3.11'
127
+
128
+ - name: Install package and stubgen
129
+ run: python -m pip install . "pybind11-stubgen>=3.0,<4" mypy
130
+
131
+ - name: Regenerate stubs and compare
132
+ run: |
133
+ # force the variant being introspected: importing two of them into one
134
+ # process fails, since they register the same pybind11 types
135
+ VIRTUAL_CASING_ISA=baseline python -c "
136
+ import sys, virtual_casing._vc_baseline as m
137
+ # __init__.py presents the classes as virtual_casing, which would make
138
+ # stubgen re-export them rather than declare them; restore their real home
139
+ for o in vars(m).values():
140
+ if isinstance(o, type):
141
+ o.__module__ = m.__name__
142
+ sys.argv = ['pybind11-stubgen', '--print-value-comments', 'virtual_casing._vc_baseline', '-o', 'regenerated']
143
+ from pybind11_stubgen import main; main()
144
+ "
145
+ # stubgen leaves trailing whitespace in docstrings; the committed copy has
146
+ # it stripped, so normalise before comparing
147
+ sed -i 's/[[:space:]]*$//' regenerated/virtual_casing/_vc_baseline.pyi
148
+ diff -u src/_vc_baseline.pyi regenerated/virtual_casing/_vc_baseline.pyi \
149
+ || { echo "::error::src/_vc_baseline.pyi is stale; regenerate it, strip trailing whitespace, and commit"; exit 1; }
150
+
151
+ - name: Type-check the stubs themselves
152
+ run: python -m mypy --strict src/__init__.pyi src/_vc_baseline.pyi
@@ -0,0 +1,138 @@
1
+ name: Wheel Builder
2
+
3
+ on: [push, pull_request, workflow_dispatch]
4
+
5
+ concurrency:
6
+ group: ${{ github.workflow }}-${{ github.ref }}
7
+ # a tag build is the one that publishes, so never cancel it
8
+ cancel-in-progress: ${{ !startsWith(github.ref, 'refs/tags/') }}
9
+
10
+ jobs:
11
+ build_wheels:
12
+ name: Build wheels on ${{ matrix.runner }} #(${{ runner.arch }})
13
+ runs-on: ${{ matrix.runner }}
14
+
15
+ strategy:
16
+ fail-fast: false
17
+ matrix:
18
+ include:
19
+ - runner: ubuntu-latest # x86_64
20
+ arch_flag: "-march=ivybridge"
21
+
22
+ - runner: macos-15 # arm64
23
+ deployment_target: 15
24
+ arch_flag: "-mcpu=apple-m1"
25
+
26
+ # every Mac that runs macOS 15 has AVX2, so ivybridge is conservative here
27
+ - runner: macos-15-intel # x86_64
28
+ deployment_target: 15
29
+ arch_flag: "-march=ivybridge"
30
+
31
+ steps:
32
+ - name: Checkout repository
33
+ uses: actions/checkout@v7
34
+ with:
35
+ submodules: recursive
36
+ fetch-depth: 0 # setuptools_scm needs the tags
37
+
38
+ - name: Set up Python
39
+ uses: actions/setup-python@v7
40
+ with:
41
+ python-version: "3.x"
42
+
43
+ - name: Install cibuildwheel
44
+ run: python -m pip install cibuildwheel
45
+
46
+ - name: Build wheels
47
+ run: python -m cibuildwheel --output-dir wheelhouse
48
+ env:
49
+ CIBW_ARCHS_LINUX: x86_64
50
+ CIBW_ENVIRONMENT_LINUX: CI=True VC_ARCH_FLAG=${{ matrix.arch_flag }} LIBXSMM_DIR=/opt/libxsmm
51
+ # LIBXSMM's own code is built for SSE4.2; the matrix kernels it generates use the CPU that runs them
52
+ CIBW_BEFORE_ALL_LINUX: >
53
+ yum install -y lapack-devel openblas-devel fftw-devel &&
54
+ git clone --depth 1 --branch 2.1.0 https://github.com/libxsmm/libxsmm.git /opt/libxsmm &&
55
+ make -C /opt/libxsmm -j$(nproc) STATIC=1 SSE=4 lib
56
+ CIBW_BEFORE_BUILD_LINUX: python -m pip install --upgrade pip setuptools wheel numpy cmake ninja && git config --global --add safe.directory /project
57
+ CIBW_MANYLINUX_X86_64_IMAGE: quay.io/pypa/manylinux_2_28_x86_64
58
+ CIBW_SKIP: "*-musllinux_*"
59
+ CIBW_ENVIRONMENT_MACOS: CI=True VC_ARCH_FLAG=${{ matrix.arch_flag }} MACOSX_DEPLOYMENT_TARGET=${{ matrix.deployment_target }} CC=gcc-12 CXX=g++-12 LIBXSMM_DIR=/tmp/libxsmm # with GCC
60
+ #CIBW_ENVIRONMENT_MACOS: CI=True VC_ARCH_FLAG=${{ matrix.arch_flat }} MACOSX_DEPLOYMENT_TARGET=${{ matrix.deployment_target }} OpenMP_ROOT=$(brew --prefix)/opt/libomp # with Apple Clang
61
+ # LIBXSMM's own code is built for the runner (SSE4.2 on x86_64); the matrix kernels it generates use the CPU
62
+ # that runs them
63
+ CIBW_BEFORE_ALL_MACOS: >
64
+ brew install fftw lapack gcc@12 libomp openblas &&
65
+ git clone --depth 1 --branch 2.1.0 https://github.com/libxsmm/libxsmm.git /tmp/libxsmm &&
66
+ MACOSX_DEPLOYMENT_TARGET=${{ matrix.deployment_target }} make -C /tmp/libxsmm -j$(sysctl -n hw.ncpu) STATIC=1 lib
67
+ CIBW_BEFORE_BUILD_MACOS: python -m pip install --upgrade pip setuptools wheel numpy cmake ninja && git config --global --add safe.directory /project
68
+ CIBW_BUILD: cp310-* cp311-* cp312-* cp313-* cp314-*
69
+ # exercise the repaired wheel, not the source build test.yml already covers
70
+ CIBW_TEST_REQUIRES: numpy scipy
71
+ # check_isa.py forces each variant that was built and is runnable here;
72
+ # arm64 builds only baseline, and v4 must not be forced without AVX-512
73
+ CIBW_TEST_COMMAND: >
74
+ python -m unittest discover -s {project}/test -p "test.py" &&
75
+ python {project}/test/check_isa.py
76
+
77
+ - name: Debug with tmate on failure
78
+ if: ${{ failure() && github.event_name == 'workflow_dispatch' }}
79
+ uses: mxschmitt/action-tmate@v3
80
+ with:
81
+ timeout-minutes: 15
82
+
83
+ - name: Upload wheels
84
+ uses: actions/upload-artifact@v7
85
+ with:
86
+ name: wheels-${{ matrix.runner }}
87
+ path: wheelhouse/*.whl
88
+ overwrite: true
89
+
90
+
91
+ build_sdist:
92
+ name: Build source distribution
93
+ runs-on: ubuntu-latest
94
+
95
+ steps:
96
+ - uses: actions/checkout@v7
97
+ with:
98
+ submodules: recursive
99
+ fetch-depth: 0 # setuptools_scm needs the tags
100
+
101
+ - uses: actions/setup-python@v7
102
+ name: Install Python
103
+ with:
104
+ python-version: '3.11'
105
+
106
+ # - name: Install setuptools_scm
107
+ # run: python -m pip install setuptools_scm
108
+
109
+ - name: Build sdist
110
+ run: |
111
+ pip install build
112
+ python -m build --sdist
113
+
114
+ - uses: actions/upload-artifact@v7
115
+ with:
116
+ name: sdist
117
+ path: dist/*.tar.gz
118
+ overwrite: true
119
+
120
+
121
+ upload_pypi:
122
+ needs: [build_wheels, build_sdist]
123
+ runs-on: ubuntu-latest
124
+ # upload to PyPI on every tag starting with 'v'
125
+ if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
126
+ # alternatively, to publish when a GitHub Release is created, use the following rule:
127
+ # if: github.event_name == 'release' && github.event.action == 'published'
128
+ permissions:
129
+ id-token: write
130
+ steps:
131
+ - uses: actions/download-artifact@v8
132
+ with:
133
+ path: dist
134
+ merge-multiple: true
135
+
136
+ - uses: pypa/gh-action-pypi-publish@release/v1
137
+ with:
138
+ skip-existing: true # so a re-run after a partial upload doesn't 400
@@ -0,0 +1,119 @@
1
+ cff-version: 1.2.0
2
+ message: "If you use virtual-casing, please cite the software and the papers below."
3
+ type: software
4
+ title: "virtual-casing: the virtual-casing principle on toroidal surfaces"
5
+ authors:
6
+ - given-names: Dhairya
7
+ family-names: Malhotra
8
+ - given-names: Bharat
9
+ family-names: Medasani
10
+ - given-names: Matt
11
+ family-names: Landreman
12
+ - given-names: Chris
13
+ family-names: Smiet
14
+ - given-names: Antoine
15
+ family-names: Cerfon
16
+ abstract: "A C++ library, with C and Python interfaces, that computes from the total magnetic field on a toroidal surface the part due to currents outside (or inside) the surface, on and off the surface, and the gradient of the external part, using the virtual-casing principle and the high-order singular quadratures of BIEST."
17
+ repository-code: "https://github.com/hiddenSymmetries/virtual-casing"
18
+ license: Apache-2.0
19
+ preferred-citation:
20
+ type: article
21
+ title: "Efficient high-order singular quadrature schemes in magnetic fusion"
22
+ authors:
23
+ - given-names: Dhairya
24
+ family-names: Malhotra
25
+ - given-names: Antoine J.
26
+ family-names: Cerfon
27
+ - given-names: Michael
28
+ family-names: "O'Neil"
29
+ - given-names: Evan
30
+ family-names: Toler
31
+ journal: "Plasma Physics and Controlled Fusion"
32
+ publisher:
33
+ name: IOP Publishing
34
+ volume: 62
35
+ issue: 2
36
+ start: "024004"
37
+ year: 2020
38
+ month: 2
39
+ doi: "10.1088/1361-6587/ab57f4"
40
+ references:
41
+ - type: article
42
+ title: "Taylor states in stellarators: A fast high-order boundary integral solver"
43
+ authors:
44
+ - given-names: Dhairya
45
+ family-names: Malhotra
46
+ - given-names: Antoine
47
+ family-names: Cerfon
48
+ - given-names: Lise-Marie
49
+ family-names: Imbert-Gérard
50
+ - given-names: Michael
51
+ family-names: "O'Neil"
52
+ journal: "Journal of Computational Physics"
53
+ publisher:
54
+ name: Elsevier BV
55
+ volume: 397
56
+ start: 108791
57
+ year: 2019
58
+ month: 11
59
+ doi: "10.1016/j.jcp.2019.06.067"
60
+ notes: "The singular quadrature that virtual-casing uses through BIEST."
61
+ - type: article
62
+ title: "Efficient high-order singular quadrature schemes in magnetic fusion"
63
+ authors:
64
+ - given-names: Dhairya
65
+ family-names: Malhotra
66
+ - given-names: Antoine J.
67
+ family-names: Cerfon
68
+ - given-names: Michael
69
+ family-names: "O'Neil"
70
+ - given-names: Evan
71
+ family-names: Toler
72
+ journal: "Plasma Physics and Controlled Fusion"
73
+ publisher:
74
+ name: IOP Publishing
75
+ volume: 62
76
+ issue: 2
77
+ start: "024004"
78
+ year: 2020
79
+ month: 2
80
+ doi: "10.1088/1361-6587/ab57f4"
81
+ - type: software
82
+ title: "BIEST: Boundary Integral Equation Solver for Taylor states"
83
+ authors:
84
+ - given-names: Dhairya
85
+ family-names: Malhotra
86
+ repository-code: "https://github.com/dmalhotra/BIEST"
87
+ license: Apache-2.0
88
+ doi: "10.5281/zenodo.23511944"
89
+ notes: "virtual-casing uses BIEST's singular quadratures, surface operators and off-surface operator, included as the git submodule extern/BIEST."
90
+ - type: software
91
+ title: "SCTL: Scientific Computing Template Library"
92
+ authors:
93
+ - given-names: Dhairya
94
+ family-names: Malhotra
95
+ - given-names: Tianyue
96
+ family-names: Li
97
+ - given-names: Robert
98
+ family-names: Blackwell
99
+ - given-names: Abtin
100
+ family-names: Rahimian
101
+ - given-names: Wen
102
+ family-names: Yan
103
+ - given-names: Xuanzhao
104
+ family-names: Gao
105
+ repository-code: "https://github.com/dmalhotra/SCTL"
106
+ url: "https://sctl.readthedocs.io"
107
+ license: Apache-2.0
108
+ doi: "10.5281/zenodo.23511629"
109
+ notes: "virtual-casing is built on SCTL, included as the git submodule extern/SCTL: directly for its containers, and through BIEST for the adaptive near-surface quadrature of off-surface evaluation (QuadElemList), FFTs and Gauss-Legendre rules."
110
+ - type: software
111
+ title: findFFTW
112
+ authors:
113
+ - given-names: Wenzel
114
+ family-names: Jakob
115
+ - given-names: Patrick
116
+ family-names: Bos
117
+ repository-code: "https://github.com/egpbos/findFFTW"
118
+ license: BSD-3-Clause
119
+ notes: "cmake/FindFFTW.cmake."
@@ -0,0 +1,169 @@
1
+ cmake_minimum_required(VERSION 3.16)
2
+ project(virtual_casing)
3
+ #set(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake ${CMAKE_MODULE_PATH})
4
+
5
+ set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
6
+ set(CMAKE_POSITION_INDEPENDENT_CODE ON)
7
+ set(CMAKE_CXX_STANDARD 17)
8
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
9
+
10
+ OPTION (USE_PROFILER "Activate code profiling." OFF)
11
+ if (USE_PROFILER)
12
+ add_definitions (-DSCTL_PROFILE=5 -DSCTL_VERBOSE)
13
+ endif ()
14
+ set(CMAKE_VERBOSE_MAKEFILE ON CACHE BOOL "ON")
15
+
16
+ if(DEFINED ENV{CONDA_PREFIX})
17
+ include_directories($ENV{CONDA_PREFIX}/include)
18
+ link_directories("$ENV{CONDA_PREFIX}/lib")
19
+ message(STATUS "Conda prefix is $ENV{CONDA_PREFIX}")
20
+ endif()
21
+
22
+ # Add linker and incldue directories for conda build before finding any library
23
+ if (DEFINED ENV{CONDA_BUILD})
24
+ link_directories("$ENV{BUILD_PREFIX}/lib")
25
+ include_directories("$ENV{BUILD_PREFIX}/include")
26
+ message(STATUS "Prefix environment variable is $ENV{BUILD_PREFIX}")
27
+ endif ()
28
+
29
+
30
+ # Wheels turn this off (pyproject.toml): one N=1 dgemm, no LAPACK, ~80% of wheel size
31
+ option (VC_USE_BLAS "Link BLAS/LAPACK; SCTL falls back to its own routines without them" ON)
32
+ if (VC_USE_BLAS)
33
+ find_package (BLAS)
34
+ endif ()
35
+ if (BLAS_FOUND)
36
+ add_definitions (-DSCTL_HAVE_BLAS)
37
+ if (NOT ${BLA_VENDOR} MATCHES "^Intel")
38
+ find_package (LAPACK)
39
+ if(LAPACK_FOUND)
40
+ add_definitions (-DSCTL_HAVE_LAPACK)
41
+ endif()
42
+ else()
43
+ add_definitions (-DSCTL_HAVE_LAPACK)
44
+ endif()
45
+ endif ()
46
+
47
+ list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake)
48
+ find_package(FFTW COMPONENTS DOUBLE_LIB)
49
+ if(FFTW_DOUBLE_LIB_FOUND)
50
+ message(STATUS "FFTW_INCLUDE_DIR is ${FFTW_INCLUDE_DIRS}")
51
+ add_definitions (-DSCTL_HAVE_FFTW)
52
+ include_directories("${FFTW_INCLUDE_DIRS}")
53
+ endif()
54
+ # float/long-double FFTW is never called; linking it only bloats the wheel
55
+
56
+ # LIBXSMM generates SCTL's small matrix products for the CPU that runs them, whatever the compiler flags
57
+ option (VC_USE_LIBXSMM "Link LIBXSMM, if found in LIBXSMM_DIR or the default paths, for SCTL's small matrix products" ON)
58
+ if (VC_USE_LIBXSMM)
59
+ find_path (LIBXSMM_INCLUDE_DIR libxsmm.h HINTS "$ENV{LIBXSMM_DIR}/include")
60
+ find_library (LIBXSMM_LIBRARY NAMES libxsmm.a xsmm HINTS "$ENV{LIBXSMM_DIR}/lib")
61
+ endif ()
62
+ if (LIBXSMM_INCLUDE_DIR AND LIBXSMM_LIBRARY)
63
+ find_package (Threads REQUIRED)
64
+ set (LIBXSMM_LIBRARIES ${LIBXSMM_LIBRARY} Threads::Threads ${CMAKE_DL_LIBS} m)
65
+ if (NOT APPLE)
66
+ list (APPEND LIBXSMM_LIBRARIES rt)
67
+ endif ()
68
+ # versions before 2.0 lack this interface
69
+ include (CheckCXXSourceCompiles)
70
+ set (CMAKE_REQUIRED_INCLUDES ${LIBXSMM_INCLUDE_DIR})
71
+ set (CMAKE_REQUIRED_LIBRARIES ${LIBXSMM_LIBRARIES})
72
+ check_cxx_source_compiles ("#include <libxsmm.h>
73
+ int main() {
74
+ const libxsmm_gemm_shape shape = libxsmm_create_gemm_shape(1, 1, 1, 1, 1, 1, LIBXSMM_DATATYPE_F64, LIBXSMM_DATATYPE_F64, LIBXSMM_DATATYPE_F64, LIBXSMM_DATATYPE_F64);
75
+ return libxsmm_dispatch_gemm(shape, 0, 0) == nullptr;
76
+ }" LIBXSMM_FOUND)
77
+ unset (CMAKE_REQUIRED_INCLUDES)
78
+ unset (CMAKE_REQUIRED_LIBRARIES)
79
+ endif ()
80
+ if (LIBXSMM_FOUND)
81
+ add_definitions (-DSCTL_HAVE_LIBXSMM)
82
+ include_directories ("${LIBXSMM_INCLUDE_DIR}")
83
+ endif ()
84
+
85
+ find_package(Git QUIET)
86
+ if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")
87
+ # Update submodules as needed
88
+ option(GIT_SUBMODULE "Check submodules during build" ON)
89
+ if(GIT_SUBMODULE)
90
+ message(STATUS "Submodule update")
91
+ execute_process(COMMAND ${GIT_EXECUTABLE} submodule update --init --recursive
92
+ WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
93
+ RESULT_VARIABLE GIT_SUBMOD_RESULT)
94
+ if(NOT GIT_SUBMOD_RESULT EQUAL "0")
95
+ message(FATAL_ERROR "git submodule update --init failed with ${GIT_SUBMOD_RESULT}, please checkout submodules")
96
+ endif()
97
+ endif()
98
+ endif()
99
+
100
+ include(CheckCXXCompilerFlag)
101
+ IF(DEFINED ENV{VC_ARCH_FLAG})
102
+ message(STATUS "User provided architecture flag: $ENV{VC_ARCH_FLAG}")
103
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3 $ENV{VC_ARCH_FLAG} -ffp-contract=fast")
104
+ elseif(DEFINED ENV{CONDA_BUILD})
105
+ message(STATUS "conda build environment detected. Let conda set compilation flags accordingly.")
106
+ else()
107
+ # Temporary fix till clang 15 is default on macs with Apple silicon
108
+ message(STATUS "Local build detected. Set compilation flags accordingly.")
109
+ unset(COMPILER_SUPPORTS_MARCH_NATIVE CACHE)
110
+ CHECK_CXX_COMPILER_FLAG(-march=native COMPILER_SUPPORTS_MARCH_NATIVE)
111
+ if(COMPILER_SUPPORTS_MARCH_NATIVE)
112
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3 -march=native -ffp-contract=fast")
113
+ elseif(${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "arm64")
114
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3 -mcpu=native -ffp-contract=fast")
115
+ endif()
116
+ endif()
117
+
118
+ find_package(OpenMP REQUIRED)
119
+
120
+ if (SKBUILD)
121
+ find_package(pybind11 CONFIG REQUIRED)
122
+
123
+ # SCTL selects its vector ISA at compile time and has no runtime dispatch, so
124
+ # reaching AVX2/AVX-512 means compiling the extension once per level and
125
+ # choosing in __init__.py. AVX-512 cannot be a single-wheel target: Intel
126
+ # fused it off on client CPUs from Alder Lake onwards.
127
+ option (VC_DISPATCH "Build one extension per x86-64 instruction-set level" ON)
128
+ set(vc_variants baseline)
129
+ if (VC_DISPATCH AND CMAKE_SYSTEM_PROCESSOR MATCHES "x86_64|AMD64")
130
+ list(APPEND vc_variants v3 v4)
131
+ set(vc_march_v3 "-march=x86-64-v3")
132
+ set(vc_march_v4 "-march=x86-64-v4")
133
+ endif()
134
+
135
+ foreach (variant IN LISTS vc_variants)
136
+ set(tgt _vc_${variant})
137
+ pybind11_add_module(${tgt} src/python.cpp)
138
+ target_compile_definitions(${tgt} PRIVATE VC_MODULE_NAME=${tgt})
139
+ # after CMAKE_CXX_FLAGS, so this -march wins over VC_ARCH_FLAG
140
+ target_compile_options(${tgt} PRIVATE ${vc_march_${variant}}
141
+ "$<$<CXX_COMPILER_ID:PGI>:-Wc,--pending_instantiations=1000>")
142
+ target_include_directories(${tgt} PRIVATE "$<$<BOOL:${FFTW_DOUBLE_LIB_FOUND}>:${FFTW_INCLUDE_DIRS}>"
143
+ "include" "extern/SCTL/include" "extern/BIEST/include")
144
+ target_link_libraries(${tgt} PRIVATE "$<$<BOOL:${OpenMP_CXX_FOUND}>:OpenMP::OpenMP_CXX>"
145
+ "$<$<BOOL:${FFTW_DOUBLE_LIB_FOUND}>:FFTW::Double>" "$<$<BOOL:${LIBXSMM_FOUND}>:${LIBXSMM_LIBRARIES}>"
146
+ "$<$<BOOL:${BLAS_FOUND}>:${BLAS_LIBRARIES}>" "$<$<BOOL:${LAPACK_FOUND}>:${LAPACK_LIBRARIES}>")
147
+ if (LIBXSMM_FOUND AND NOT APPLE)
148
+ # not exported, so that another copy of LIBXSMM in the process does not replace these functions
149
+ target_link_options(${tgt} PRIVATE "LINKER:--exclude-libs,libxsmm.a")
150
+ endif ()
151
+ install(TARGETS ${tgt} LIBRARY DESTINATION ${PROJECT_NAME})
152
+ endforeach()
153
+
154
+ pybind11_add_module(_cpu src/cpu_features.cpp) # baseline: must run anywhere
155
+ install(TARGETS _cpu LIBRARY DESTINATION ${PROJECT_NAME})
156
+ # py.typed opts the package in to PEP 561; without it the stubs are ignored
157
+ install(FILES src/__init__.py src/__init__.pyi src/_vc_baseline.pyi src/py.typed
158
+ DESTINATION ${PROJECT_NAME})
159
+ endif()
160
+
161
+ add_executable(vc_testing EXCLUDE_FROM_ALL test/virtual-casing.cpp)
162
+ # Fix for PowerPC with PGI compiler
163
+ target_compile_options(vc_testing PUBLIC "$<$<CXX_COMPILER_ID:PGI>:-Wc,--pending_instantiations=1000>")
164
+ target_include_directories(vc_testing PRIVATE "$<$<BOOL:${FFTW_DOUBLE_LIB_FOUND}>:${FFTW_INCLUDE_DIRS}>"
165
+ "include" "extern/SCTL/include" "extern/BIEST/include")
166
+ target_link_libraries(vc_testing PUBLIC $<$<BOOL:${FFTW_DOUBLE_LIB_FOUND}>:FFTW::Double>
167
+ "$<$<BOOL:${LIBXSMM_FOUND}>:${LIBXSMM_LIBRARIES}>"
168
+ "$<$<BOOL:${BLAS_FOUND}>:${BLAS_LIBRARIES}>"
169
+ "$<$<BOOL:${LAPACK_FOUND}>:${LAPACK_LIBRARIES}>" $<$<BOOL:${OpenMP_CXX_FOUND}>:OpenMP::OpenMP_CXX>)
@@ -0,0 +1,9 @@
1
+ include src/python.cpp src/cpu_features.cpp src/__init__.py
2
+ include src/__init__.pyi src/_vc_baseline.pyi src/py.typed
3
+ include test/virtual-casing.cpp
4
+ include LICENSE NOTICE README.md
5
+ graft include
6
+ graft extern/SCTL/include
7
+ graft extern/BIEST/include
8
+ graft cmake
9
+ global-include CMakeLists.txt *.cmake