virtool-workflow 6.0.0a7__tar.gz → 6.0.0a8__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/PKG-INFO +2 -2
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/pyproject.toml +2 -2
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/pytest_plugin/data.py +6 -2
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/LICENSE +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/README.md +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/analysis/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/analysis/fastqc.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/analysis/skewer.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/analysis/trimming.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/analysis/utils.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/api/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/api/acquire.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/api/client.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/api/utils.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/cli.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/analyses.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/hmms.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/indexes.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/jobs.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/ml.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/samples.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/subtractions.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/data/uploads.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/decorators.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/errors.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/files.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/hooks.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/pytest_plugin/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/pytest_plugin/subprocess.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/pytest_plugin/utils.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/__init__.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/config.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/discover.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/events.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/hook.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/path.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/ping.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/redis.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/run.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/run_subprocess.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/runtime/sentry.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/utils.py +0 -0
- {virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/workflow.py +0 -0
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Metadata-Version: 2.1
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Name: virtool-workflow
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Version: 6.0.
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Version: 6.0.0a8
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Summary: A framework for developing bioinformatics workflows for Virtool.
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Home-page: https://github.com/virtool/virtool-workflow
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License: MIT
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Requires-Dist: pydantic-factories (>=1.17.3,<2.0.0)
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Requires-Dist: pyfixtures (>=1.0.0,<2.0.0)
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Requires-Dist: sentry-sdk (>=1.5.7,<2.0.0)
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Requires-Dist: virtool-core (>=
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Requires-Dist: virtool-core (>=11.0.0,<12.0.0)
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Project-URL: Repository, https://github.com/virtool/virtool-workflow
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Description-Content-Type: text/markdown
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[tool.poetry]
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name = "virtool-workflow"
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version = "6.0.0-alpha.
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version = "6.0.0-alpha.8"
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description = "A framework for developing bioinformatics workflows for Virtool."
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authors = ["Ian Boyes", "Blake Smith", "Ryan Fang"]
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license = "MIT"
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click = "^8.1.7"
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aiohttp = "^3.8.1"
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aiofiles = "^0.7.0"
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virtool-core = "^
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virtool-core = "^11.0.0"
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aioredis = "1.3.1"
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sentry-sdk = "^1.5.7"
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pyfixtures = "^1.0.0"
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{virtool_workflow-6.0.0a7 → virtool_workflow-6.0.0a8}/virtool_workflow/pytest_plugin/data.py
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@pytest.fixture
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def data(
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def data(
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virtool_workflow_example_path: Path, static_datetime: datetime.datetime
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) -> Data:
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class AnalysisFactory(ModelFactory):
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__model__ = Analysis
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download_url=f"/subtractions/{subtraction.id}/files/{filename}",
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id=(i + 1),
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name=filename,
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size=(
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size=(virtool_workflow_example_path / "subtraction" / filename)
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.stat()
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.st_size,
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subtraction=subtraction.id,
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type="bowtie2",
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)
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