virtool-workflow 5.5.0a2__tar.gz → 5.5.0a3__tar.gz

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Files changed (42) hide show
  1. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/PKG-INFO +1 -1
  2. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/pyproject.toml +1 -1
  3. virtool_workflow-5.5.0a3/virtool_workflow/analysis/__init__.py +1 -0
  4. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/discover.py +3 -0
  5. virtool_workflow-5.5.0a2/virtool_workflow/analysis/__init__.py +0 -5
  6. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/LICENSE +0 -0
  7. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/README.md +0 -0
  8. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/__init__.py +0 -0
  9. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/analysis/fastqc.py +0 -0
  10. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/analysis/skewer.py +0 -0
  11. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/analysis/trimming.py +0 -0
  12. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/analysis/utils.py +0 -0
  13. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/api/__init__.py +0 -0
  14. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/api/acquire.py +0 -0
  15. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/api/client.py +0 -0
  16. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/api/utils.py +0 -0
  17. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/cli.py +0 -0
  18. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/__init__.py +0 -0
  19. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/analyses.py +0 -0
  20. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/hmms.py +0 -0
  21. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/indexes.py +0 -0
  22. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/jobs.py +0 -0
  23. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/ml.py +0 -0
  24. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/samples.py +0 -0
  25. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/subtractions.py +0 -0
  26. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/data/uploads.py +0 -0
  27. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/decorators.py +0 -0
  28. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/errors.py +0 -0
  29. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/files.py +0 -0
  30. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/hooks.py +0 -0
  31. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/__init__.py +0 -0
  32. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/config.py +0 -0
  33. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/events.py +0 -0
  34. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/hook.py +0 -0
  35. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/path.py +0 -0
  36. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/ping.py +0 -0
  37. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/redis.py +0 -0
  38. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/run.py +0 -0
  39. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/run_subprocess.py +0 -0
  40. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/sentry.py +0 -0
  41. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/utils.py +0 -0
  42. {virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/workflow.py +0 -0
{virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: virtool-workflow
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- Version: 5.5.0a2
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+ Version: 5.5.0a3
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  Summary: A framework for developing bioinformatics workflows for Virtool.
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  Home-page: https://github.com/virtool/virtool-workflow
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  License: MIT
{virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "virtool-workflow"
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- version = "5.5.0-alpha.2"
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+ version = "5.5.0-alpha.3"
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  description = "A framework for developing bioinformatics workflows for Virtool."
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  authors = ["Ian Boyes", "Blake Smith", "Ryan Fang"]
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  license = "MIT"
virtool_workflow-5.5.0a3/virtool_workflow/analysis/__init__.py ADDED
@@ -0,0 +1 @@
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+ """Tools for workflows relating to sequence analysis."""
{virtool_workflow-5.5.0a2 → virtool_workflow-5.5.0a3}/virtool_workflow/runtime/discover.py RENAMED
@@ -41,6 +41,9 @@ def load_builtin_fixtures():
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  """
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  import_module("virtool_workflow.data")
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+ import_module("virtool_workflow.analysis.fastqc")
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+ import_module("virtool_workflow.analysis.skewer")
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+ import_module("virtool_workflow.runtime.run_subprocess")
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  def load_custom_fixtures():
virtool_workflow-5.5.0a2/virtool_workflow/analysis/__init__.py DELETED
@@ -1,5 +0,0 @@
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- """Tools for workflows relating to sequence analysis."""
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-
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- __fixtures__ = [
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- "virtool_workflow.analysis.trim_parameters",
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- ]