vicinity 0.4.4__tar.gz → 0.4.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (40) hide show
  1. vicinity-0.4.5/.github/workflows/release.yaml +40 -0
  2. {vicinity-0.4.4 → vicinity-0.4.5}/PKG-INFO +3 -3
  3. {vicinity-0.4.4 → vicinity-0.4.5}/README.md +1 -1
  4. {vicinity-0.4.4 → vicinity-0.4.5}/pyproject.toml +4 -1
  5. {vicinity-0.4.4 → vicinity-0.4.5}/tests/test_vicinity.py +31 -0
  6. {vicinity-0.4.4 → vicinity-0.4.5}/uv.lock +116 -73
  7. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/usearch.py +13 -1
  8. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/version.py +1 -1
  9. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity.egg-info/PKG-INFO +3 -3
  10. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity.egg-info/SOURCES.txt +3 -0
  11. vicinity-0.4.5/vicinity.egg-info/scm_file_list.json +35 -0
  12. vicinity-0.4.5/vicinity.egg-info/scm_version.json +8 -0
  13. {vicinity-0.4.4 → vicinity-0.4.5}/.github/workflows/ci.yaml +0 -0
  14. {vicinity-0.4.4 → vicinity-0.4.5}/.gitignore +0 -0
  15. {vicinity-0.4.4 → vicinity-0.4.5}/.pre-commit-config.yaml +0 -0
  16. {vicinity-0.4.4 → vicinity-0.4.5}/CITATION.cff +0 -0
  17. {vicinity-0.4.4 → vicinity-0.4.5}/LICENSE +0 -0
  18. {vicinity-0.4.4 → vicinity-0.4.5}/Makefile +0 -0
  19. {vicinity-0.4.4 → vicinity-0.4.5}/assets/images/vicinity_logo.png +0 -0
  20. {vicinity-0.4.4 → vicinity-0.4.5}/setup.cfg +0 -0
  21. {vicinity-0.4.4 → vicinity-0.4.5}/tests/conftest.py +0 -0
  22. {vicinity-0.4.4 → vicinity-0.4.5}/tests/test_utils.py +0 -0
  23. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/__init__.py +0 -0
  24. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/__init__.py +0 -0
  25. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/annoy.py +0 -0
  26. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/base.py +0 -0
  27. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/basic.py +0 -0
  28. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/faiss.py +0 -0
  29. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/hnsw.py +0 -0
  30. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/pynndescent.py +0 -0
  31. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/backends/voyager.py +0 -0
  32. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/datatypes.py +0 -0
  33. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/integrations/dataset_card_template.md +0 -0
  34. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/integrations/huggingface.py +0 -0
  35. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/py.typed +0 -0
  36. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/utils.py +0 -0
  37. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity/vicinity.py +0 -0
  38. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity.egg-info/dependency_links.txt +0 -0
  39. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity.egg-info/requires.txt +0 -0
  40. {vicinity-0.4.4 → vicinity-0.4.5}/vicinity.egg-info/top_level.txt +0 -0
@@ -0,0 +1,40 @@
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+ name: Release to PyPI
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+
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+ on:
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+ workflow_dispatch:
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+
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+ jobs:
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+ build:
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+ name: Build distribution
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+ runs-on: ubuntu-latest
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+ steps:
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+ - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5
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+
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+ - name: Install uv
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+ uses: astral-sh/setup-uv@d0d8abe699bfb85fec6de9f7adb5ae17292296ff
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+
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+ - name: Build package
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+ run: uv build
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+
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+ - name: Upload dist
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+ uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02
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+ with:
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+ name: dist
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+ path: dist/
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+
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+ publish:
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+ name: Publish to PyPI
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+ needs: build
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+ runs-on: ubuntu-latest
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+ environment: release
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+ permissions:
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+ id-token: write
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+ steps:
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+ - name: Download dist
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+ uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093
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+ with:
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+ name: dist
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+ path: dist/
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+
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+ - name: Publish to PyPI
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+ uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b
@@ -1,8 +1,8 @@
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  Metadata-Version: 2.4
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  Name: vicinity
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- Version: 0.4.4
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+ Version: 0.4.5
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  Summary: Lightweight Nearest Neighbors with Flexible Backends
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- Author-email: Stéphan Tulkens <stephantul@gmail.com>, Thomas van Dongen <thomas123@live.nl>
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+ Author-email: Stéphan Tulkens <stephantul@gmail.com>, Thomas van Dongen <thomasvdongen@proton.me>
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  License: MIT License
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  Copyright (c) 2024 The Minish Lab
@@ -253,7 +253,7 @@ NOTE: the ANN backends do not support dynamic deletion. To delete items, you nee
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  | | `m` | Number of connections per layer. | `16` |
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  | **PYNNDESCENT** | `metric` | Similarity metric to use (`cosine`, `euclidean`, `manhattan`). | `"cosine"` |
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  | | `n_neighbors` | Number of neighbors to use for search. | `15` |
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- | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). | `"cos"` |
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+ | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). `hamming` and `tanimoto` take uint8 vectors bit-packed with `np.packbits`. | `"cos"` |
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  | | `connectivity` | Number of connections per node in the graph. | `16` |
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  | | `expansion_add` | Number of candidates considered during graph construction. | `128` |
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  | | `expansion_search` | Number of candidates considered during search. | `64` |
@@ -158,7 +158,7 @@ NOTE: the ANN backends do not support dynamic deletion. To delete items, you nee
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  | | `m` | Number of connections per layer. | `16` |
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  | **PYNNDESCENT** | `metric` | Similarity metric to use (`cosine`, `euclidean`, `manhattan`). | `"cosine"` |
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  | | `n_neighbors` | Number of neighbors to use for search. | `15` |
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- | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). | `"cos"` |
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+ | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). `hamming` and `tanimoto` take uint8 vectors bit-packed with `np.packbits`. | `"cos"` |
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  | | `connectivity` | Number of connections per node in the graph. | `16` |
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  | | `expansion_add` | Number of candidates considered during graph construction. | `128` |
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  | | `expansion_search` | Number of candidates considered during search. | `64` |
@@ -5,7 +5,7 @@ readme = { file = "README.md", content-type = "text/markdown" }
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  dynamic = ["version"]
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  requires-python = ">=3.10"
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  license = { file = "LICENSE" }
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- authors = [{ name = "Stéphan Tulkens", email = "stephantul@gmail.com"}, {name = "Thomas van Dongen", email = "thomas123@live.nl"}]
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+ authors = [{ name = "Stéphan Tulkens", email = "stephantul@gmail.com"}, {name = "Thomas van Dongen", email = "thomasvdongen@proton.me"}]
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  classifiers = [
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  "Development Status :: 4 - Beta",
@@ -142,3 +142,6 @@ license-files = []
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  [tool.setuptools.dynamic]
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  version = {attr = "vicinity.version.__version__"}
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+
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+ [tool.uv]
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+ exclude-newer = "1 week"
@@ -333,3 +333,34 @@ def test_vicinity_evaluate(vicinity_instance: Vicinity, vectors: np.ndarray) ->
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  vicinity_instance.backend.arguments.metric = "manhattan"
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  with pytest.raises(ValueError):
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  vicinity_instance.evaluate(vectors, query_vectors)
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+
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+
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+ @pytest.mark.parametrize("metric", ["hamming", "tanimoto"])
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+ def test_vicinity_usearch_binary_metrics(tmp_path: Path, metric: str) -> None:
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+ """
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+ Test that the usearch backend supports binary metrics on bit-packed vectors.
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+
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+ :param tmp_path: Temporary directory for saving and loading.
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+ :param metric: The binary metric to use.
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+ """
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+ bits = np.random.default_rng(42).integers(0, 2, size=(50, 64)).astype(bool)
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+ packed = np.packbits(bits, axis=1)
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+ items = [str(i) for i in range(len(bits))]
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+ vicinity = Vicinity.from_vectors_and_items(packed, items, backend_type=Backend.USEARCH, metric=metric)
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+ assert vicinity.dim == packed.shape[1]
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+
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+ if metric == "hamming":
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+ expected = (bits[0] != bits).sum(axis=1)
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+ else:
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+ expected = 1 - (bits[0] & bits).sum(axis=1) / (bits[0] | bits).sum(axis=1)
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+ ((_, distance),) = vicinity.query(packed[:1], k=1)[0]
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+ ((_, farthest),) = vicinity.query(packed[:1], k=len(items))[0][-1:]
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+ assert distance == pytest.approx(0)
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+ assert farthest == pytest.approx(expected.max(), abs=1e-5)
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+
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+ vicinity.insert(["new"], packed[:1])
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+ vicinity.save(tmp_path / "binary")
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+ assert Vicinity.load(tmp_path / "binary").query(packed[:1], k=3)[0] == vicinity.query(packed[:1], k=3)[0]
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+
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+ with pytest.raises(ValueError, match="bit-packed"):
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+ Vicinity.from_vectors_and_items(bits.astype(np.float32), items, backend_type=Backend.USEARCH, metric=metric)
@@ -7,18 +7,22 @@ resolution-markers = [
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  "python_full_version < '3.11'",
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  ]
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+ [options]
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+ exclude-newer = "2026-04-26T18:37:56.643847Z"
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+ exclude-newer-span = "P1W"
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+
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  [[package]]
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  name = "aiohappyeyeballs"
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- version = "2.4.6"
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+ version = "2.6.1"
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  source = { registry = "https://pypi.org/simple" }
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  wheels = [
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21
  ]
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19
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  [[package]]
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  name = "aiohttp"
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- version = "3.11.13"
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+ version = "3.13.5"
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  source = { registry = "https://pypi.org/simple" }
23
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  dependencies = [
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  { name = "aiohappyeyeballs" },
@@ -30,84 +34,123 @@ dependencies = [
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  { name = "propcache" },
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99
141
  ]
100
142
 
101
143
  [[package]]
102
144
  name = "aiosignal"
103
- version = "1.3.2"
145
+ version = "1.4.0"
104
146
  source = { registry = "https://pypi.org/simple" }
105
147
  dependencies = [
106
148
  { name = "frozenlist" },
149
+ { name = "typing-extensions", marker = "python_full_version < '3.13'" },
107
150
  ]
108
- sdist = { url = "https://files.pythonhosted.org/packages/ba/b5/6d55e80f6d8a08ce22b982eafa278d823b541c925f11ee774b0b9c43473d/aiosignal-1.3.2.tar.gz", hash = "sha256:a8c255c66fafb1e499c9351d0bf32ff2d8a0321595ebac3b93713656d2436f54", size = 19424, upload-time = "2024-12-13T17:10:40.86Z" }
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109
152
  wheels = [
110
- { url = "https://files.pythonhosted.org/packages/ec/6a/bc7e17a3e87a2985d3e8f4da4cd0f481060eb78fb08596c42be62c90a4d9/aiosignal-1.3.2-py2.py3-none-any.whl", hash = "sha256:45cde58e409a301715980c2b01d0c28bdde3770d8290b5eb2173759d9acb31a5", size = 7597, upload-time = "2024-12-13T17:10:38.469Z" },
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111
154
  ]
112
155
 
113
156
  [[package]]
@@ -25,6 +25,9 @@ class UsearchArgs(BaseArgs):
25
25
  class UsearchBackend(AbstractBackend[UsearchArgs]):
26
26
  argument_class = UsearchArgs
27
27
  supported_metrics = {Metric.COSINE, Metric.INNER_PRODUCT, Metric.L2_SQUARED, Metric.HAMMING, Metric.TANIMOTO}
28
+ # Binary metrics take vectors bit-packed into uint8, as produced by np.packbits, and usearch counts their
29
+ # dimensions in bits.
30
+ binary_metrics = {Metric.HAMMING, Metric.TANIMOTO}
28
31
  inverse_metric_mapping = {
29
32
  Metric.COSINE: "cos",
30
33
  Metric.INNER_PRODUCT: "ip",
@@ -60,6 +63,13 @@ class UsearchBackend(AbstractBackend[UsearchArgs]):
60
63
 
61
64
  metric = cls._map_metric_to_string(metric_enum)
62
65
  dim = vectors.shape[1]
66
+ if metric_enum in cls.binary_metrics:
67
+ if vectors.dtype != np.uint8:
68
+ raise ValueError(
69
+ f"Metric '{metric_enum.value}' requires vectors bit-packed into uint8 with np.packbits, "
70
+ f"got dtype {vectors.dtype}."
71
+ )
72
+ dim *= 8
63
73
  index = UsearchIndex(
64
74
  ndim=dim,
65
75
  metric=metric,
@@ -84,7 +94,9 @@ class UsearchBackend(AbstractBackend[UsearchArgs]):
84
94
 
85
95
  @property
86
96
  def dim(self) -> int:
87
- """Get the dimension of the space."""
97
+ """Get the dimension of the space, in bytes for bit-packed binary metrics."""
98
+ if self.arguments.metric in self.binary_metrics:
99
+ return self.index.ndim // 8
88
100
  return self.index.ndim
89
101
 
90
102
  def __len__(self) -> int:
@@ -1,2 +1,2 @@
1
- __version_triple__ = (0, 4, 4)
1
+ __version_triple__ = (0, 4, 5)
2
2
  __version__ = ".".join(map(str, __version_triple__))
@@ -1,8 +1,8 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: vicinity
3
- Version: 0.4.4
3
+ Version: 0.4.5
4
4
  Summary: Lightweight Nearest Neighbors with Flexible Backends
5
- Author-email: Stéphan Tulkens <stephantul@gmail.com>, Thomas van Dongen <thomas123@live.nl>
5
+ Author-email: Stéphan Tulkens <stephantul@gmail.com>, Thomas van Dongen <thomasvdongen@proton.me>
6
6
  License: MIT License
7
7
 
8
8
  Copyright (c) 2024 The Minish Lab
@@ -253,7 +253,7 @@ NOTE: the ANN backends do not support dynamic deletion. To delete items, you nee
253
253
  | | `m` | Number of connections per layer. | `16` |
254
254
  | **PYNNDESCENT** | `metric` | Similarity metric to use (`cosine`, `euclidean`, `manhattan`). | `"cosine"` |
255
255
  | | `n_neighbors` | Number of neighbors to use for search. | `15` |
256
- | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). | `"cos"` |
256
+ | **USEARCH** | `metric` | Similarity metric to use (`cos`, `ip`, `l2sq`, `hamming`, `tanimoto`). `hamming` and `tanimoto` take uint8 vectors bit-packed with `np.packbits`. | `"cos"` |
257
257
  | | `connectivity` | Number of connections per node in the graph. | `16` |
258
258
  | | `expansion_add` | Number of candidates considered during graph construction. | `128` |
259
259
  | | `expansion_search` | Number of candidates considered during search. | `64` |
@@ -7,6 +7,7 @@ README.md
7
7
  pyproject.toml
8
8
  uv.lock
9
9
  .github/workflows/ci.yaml
10
+ .github/workflows/release.yaml
10
11
  assets/images/vicinity_logo.png
11
12
  tests/conftest.py
12
13
  tests/test_utils.py
@@ -21,6 +22,8 @@ vicinity.egg-info/PKG-INFO
21
22
  vicinity.egg-info/SOURCES.txt
22
23
  vicinity.egg-info/dependency_links.txt
23
24
  vicinity.egg-info/requires.txt
25
+ vicinity.egg-info/scm_file_list.json
26
+ vicinity.egg-info/scm_version.json
24
27
  vicinity.egg-info/top_level.txt
25
28
  vicinity/backends/__init__.py
26
29
  vicinity/backends/annoy.py
@@ -0,0 +1,35 @@
1
+ {
2
+ "files": [
3
+ ".github/workflows/ci.yaml",
4
+ ".github/workflows/release.yaml",
5
+ ".gitignore",
6
+ ".pre-commit-config.yaml",
7
+ "CITATION.cff",
8
+ "LICENSE",
9
+ "Makefile",
10
+ "README.md",
11
+ "assets/images/vicinity_logo.png",
12
+ "pyproject.toml",
13
+ "tests/conftest.py",
14
+ "tests/test_utils.py",
15
+ "tests/test_vicinity.py",
16
+ "uv.lock",
17
+ "vicinity/__init__.py",
18
+ "vicinity/backends/__init__.py",
19
+ "vicinity/backends/annoy.py",
20
+ "vicinity/backends/base.py",
21
+ "vicinity/backends/basic.py",
22
+ "vicinity/backends/faiss.py",
23
+ "vicinity/backends/hnsw.py",
24
+ "vicinity/backends/pynndescent.py",
25
+ "vicinity/backends/usearch.py",
26
+ "vicinity/backends/voyager.py",
27
+ "vicinity/datatypes.py",
28
+ "vicinity/integrations/dataset_card_template.md",
29
+ "vicinity/integrations/huggingface.py",
30
+ "vicinity/py.typed",
31
+ "vicinity/utils.py",
32
+ "vicinity/version.py",
33
+ "vicinity/vicinity.py"
34
+ ]
35
+ }
@@ -0,0 +1,8 @@
1
+ {
2
+ "tag": "0.4.5",
3
+ "distance": 0,
4
+ "node": "g575e276f14cfaba93e853a890dd6b29e4d189e55",
5
+ "dirty": false,
6
+ "branch": "HEAD",
7
+ "node_date": "2026-09-25"
8
+ }
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