vibframe-anndata 0.1.0__tar.gz

vibframe_anndata-0.1.0/.github/workflows/ci.yml

@@ -0,0 +1,46 @@
+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+
+permissions:
+  contents: read
+
+concurrency:
+  group: ci-${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  quality-and-tests:
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 30
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: pyproject.toml
+
+      - name: Run quality and tests on Python ${{ matrix.python-version }}
+        env:
+          PYTHON_VERSION: ${{ matrix.python-version }}
+        run: |
+          set -euo pipefail
+          uv python install "$PYTHON_VERSION"
+          rm -rf .venv-ci
+          uv venv --python "$PYTHON_VERSION" .venv-ci
+          uv pip install --python .venv-ci/bin/python -e ".[dev]"
+
+          .venv-ci/bin/python tools/build_ci_reference_fixture.py
+          .venv-ci/bin/ruff check .
+          .venv-ci/bin/pylint src/vibframe_anndata --fail-under=8.0
+          .venv-ci/bin/pytest -m "not reference" --cov=vibframe_anndata --cov-report=term-missing
+          .venv-ci/bin/pytest tests/test_reference_vibframe.py -m reference -vv

vibframe_anndata-0.1.0/.github/workflows/release-candidate.yml

@@ -0,0 +1,104 @@
+name: Release candidate
+
+on:
+  workflow_dispatch:
+  push:
+    branches:
+      - release/0.1.0
+
+permissions:
+  contents: read
+
+concurrency:
+  group: release-candidate-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  validate:
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 30
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: pyproject.toml
+
+      - name: Validate candidate on Python ${{ matrix.python-version }}
+        env:
+          PYTHON_VERSION: ${{ matrix.python-version }}
+        run: |
+          set -euo pipefail
+          uv python install "$PYTHON_VERSION"
+          VENV="$RUNNER_TEMP/vfta-rc-${PYTHON_VERSION//./-}"
+          rm -rf "$VENV"
+          uv venv --python "$PYTHON_VERSION" "$VENV"
+          uv pip install --python "$VENV/bin/python" -e ".[dev,release]"
+
+          "$VENV/bin/python" tools/build_ci_reference_fixture.py
+          "$VENV/bin/python" tools/check_release_tag.py v0.1.0
+          "$VENV/bin/ruff" check .
+          "$VENV/bin/pylint" src/vibframe_anndata --fail-under=8.0
+          "$VENV/bin/pytest" -m "not reference" --cov=vibframe_anndata --cov-report=term-missing
+          "$VENV/bin/pytest" tests/test_reference_vibframe.py -m reference -vv
+
+  build:
+    needs: validate
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 20
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: pyproject.toml
+
+      - name: Build and validate distributions
+        run: |
+          set -euo pipefail
+          uv python install 3.12
+          VENV="$RUNNER_TEMP/vfta-build"
+          rm -rf "$VENV" dist build
+          uv venv --python 3.12 "$VENV"
+          uv pip install --python "$VENV/bin/python" "build>=1.2,<2" "twine>=7,<8"
+          "$VENV/bin/python" tools/check_release_tag.py v0.1.0
+          "$VENV/bin/python" -m build
+          "$VENV/bin/python" -m twine check dist/*
+
+      - name: Upload candidate distributions
+        uses: actions/upload-artifact@v4
+        with:
+          name: vibframe-anndata-0.1.0-candidate
+          path: dist/
+          if-no-files-found: error
+
+  smoke-install:
+    needs: build
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 15
+
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: vibframe-anndata-0.1.0-candidate
+          path: dist/
+
+      - uses: astral-sh/setup-uv@v6
+
+      - name: Install wheel and import public API
+        run: |
+          set -euo pipefail
+          uv python install 3.12
+          VENV="$RUNNER_TEMP/vfta-smoke"
+          rm -rf "$VENV"
+          uv venv --python 3.12 "$VENV"
+          uv pip install --python "$VENV/bin/python" dist/*.whl
+          "$VENV/bin/python" -c "import vibframe_anndata as vfta; assert vfta.__version__ == '0.1.0', vfta.__version__; assert callable(vfta.import_raw); assert callable(vfta.import_raw_to_h5ad); assert callable(vfta.add_features); assert callable(vfta.add_features_to_h5ad); assert callable(vfta.recalculate_features_to_h5ad); assert callable(vfta.remove_features_from_h5ad); print('release-candidate wheel smoke test passed')"

vibframe_anndata-0.1.0/.github/workflows/release.yml

@@ -0,0 +1,115 @@
+name: Release
+
+on:
+  push:
+    tags:
+      - "v*.*.*"
+
+permissions:
+  contents: read
+
+jobs:
+  test:
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 30
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: pyproject.toml
+
+      - name: Test release on Python ${{ matrix.python-version }}
+        env:
+          PYTHON_VERSION: ${{ matrix.python-version }}
+          RELEASE_TAG: ${{ github.ref_name }}
+        run: |
+          set -euo pipefail
+          uv python install "$PYTHON_VERSION"
+          VENV="$RUNNER_TEMP/vfta-release-test-${PYTHON_VERSION//./-}"
+          rm -rf "$VENV"
+          uv venv --python "$PYTHON_VERSION" "$VENV"
+          uv pip install --python "$VENV/bin/python" -e ".[dev,release]"
+
+          "$VENV/bin/python" tools/build_ci_reference_fixture.py
+          "$VENV/bin/python" tools/check_release_tag.py "$RELEASE_TAG"
+          "$VENV/bin/ruff" check .
+          "$VENV/bin/pylint" src/vibframe_anndata --fail-under=8.0
+          "$VENV/bin/pytest" -m "not reference" --cov=vibframe_anndata --cov-report=term-missing
+          "$VENV/bin/pytest" tests/test_reference_vibframe.py -m reference -vv
+
+  build:
+    needs: test
+    runs-on: [self-hosted, linux, x64, homelab-ci]
+    timeout-minutes: 20
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: pyproject.toml
+
+      - name: Build and validate distributions
+        env:
+          RELEASE_TAG: ${{ github.ref_name }}
+        run: |
+          set -euo pipefail
+          uv python install 3.12
+          VENV="$RUNNER_TEMP/vfta-release-build"
+          rm -rf "$VENV" dist build
+          uv venv --python 3.12 "$VENV"
+          uv pip install --python "$VENV/bin/python" "build>=1.2,<2" "twine>=7,<8"
+          "$VENV/bin/python" tools/check_release_tag.py "$RELEASE_TAG"
+          "$VENV/bin/python" -m build
+          "$VENV/bin/python" -m twine check dist/*
+
+      - name: Upload distributions
+        uses: actions/upload-artifact@v4
+        with:
+          name: python-distributions
+          path: dist/
+          if-no-files-found: error
+
+  publish-pypi:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/vibframe-anndata
+    permissions:
+      id-token: write
+      contents: read
+
+    steps:
+      - name: Download distributions
+        uses: actions/download-artifact@v4
+        with:
+          name: python-distributions
+          path: dist/
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+
+  github-release:
+    needs: publish-pypi
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+
+    steps:
+      - name: Download distributions
+        uses: actions/download-artifact@v4
+        with:
+          name: python-distributions
+          path: dist/
+      - name: Create GitHub release
+        env:
+          GH_TOKEN: ${{ github.token }}
+        run: gh release create "${GITHUB_REF_NAME}" dist/* --generate-notes --verify-tag

vibframe_anndata-0.1.0/.gitignore

@@ -0,0 +1,35 @@
+# Project data: intentionally non-versioned
+/data/
+
+# Python
+__pycache__/
+*.py[cod]
+*.egg-info/
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+.coverage
+htmlcov/
+dist/
+build/
+.venv/
+venv/
+
+# Generated AnnData / local outputs
+*.h5ad
+
+# Benchmark generated/downloaded artefacts
+benchmarks/**/synthetic_data/
+benchmarks/**/third_party/
+benchmarks/**/results.zip
+benchmarks/memory_scalability/results/
+
+# IDE / OS
+.DS_Store
+.idea/
+.vscode/
+
+# Secrets / local configuration
+.env
+.env.*
+!.env.example

vibframe_anndata-0.1.0/LICENSE

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2026, Alejandro González Zapico
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

vibframe_anndata-0.1.0/PKG-INFO

@@ -0,0 +1,136 @@
+Metadata-Version: 2.5
+Name: vibframe-anndata
+Version: 0.1.0
+Summary: Reproducible VibFrame ingestion and incremental AnnData feature engineering.
+Project-URL: Source, https://github.com/413hq/VibFrame_To_Anndata
+Project-URL: Issues, https://github.com/413hq/VibFrame_To_Anndata/issues
+Author: Alejandro González Zapico
+License-Expression: BSD-3-Clause
+License-File: LICENSE
+Keywords: anndata,condition-monitoring,machine-learning,signal-processing,vibration
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.10
+Requires-Dist: anndata<0.13,>=0.10
+Requires-Dist: awkward<3,>=2.5
+Requires-Dist: numpy<3,>=1.26
+Requires-Dist: pandas<3,>=2.0
+Requires-Dist: pyarrow<26,>=14
+Requires-Dist: pyyaml<7,>=6
+Requires-Dist: scipy<2,>=1.11
+Provides-Extra: dev
+Requires-Dist: psutil<8,>=6; extra == 'dev'
+Requires-Dist: pylint<4,>=3.2; extra == 'dev'
+Requires-Dist: pytest-cov<7,>=5; extra == 'dev'
+Requires-Dist: pytest<9,>=8; extra == 'dev'
+Requires-Dist: ruff<1,>=0.6; extra == 'dev'
+Provides-Extra: release
+Requires-Dist: build<2,>=1.2; extra == 'release'
+Requires-Dist: tomli<3,>=2; (python_version < '3.11') and extra == 'release'
+Requires-Dist: twine<8,>=7; extra == 'release'
+Description-Content-Type: text/markdown
+
+# VibFrame to AnnData
+
+Python package for staged conversion of TWave VibFrame data into reusable `AnnData` datasets.
+
+The workflow is intentionally split in two phases:
+
+1. **Ingest raw VibFrame data once** into an AnnData base (`obs`, `obsm`, `uns`).
+2. **Add, recalculate or remove features** from the raw signals already stored in AnnData, without reopening the original VibFrame.
+
+For datasets that fit comfortably in memory:
+
+```python
+from vibframe_anndata import add_features, import_raw, remove_features, write_h5ad
+
+adata = import_raw("dataset.vibframe.zip")
+write_h5ad(adata, "dataset_raw.h5ad")
+
+adata = add_features(
+    adata,
+    {
+        "version": 1,
+        "features": [
+            {"name": "rms", "source": "waveform"},
+            {"name": "kurtosis", "source": "waveform"},
+        ],
+    },
+)
+
+adata = remove_features(adata, ["kurtosis"])
+write_h5ad(adata, "dataset_features.h5ad")
+```
+
+For datasets larger than RAM, use the blockwise H5AD APIs:
+
+```python
+from vibframe_anndata import import_raw_to_h5ad, add_features_to_h5ad
+
+base = import_raw_to_h5ad(
+    "dataset.vibframe.zip",
+    "dataset_raw.h5ad",
+    config={
+        "version": 1,
+        "raw_import": {"on_missing_signal": "nan"},
+        "output": {"dtype": "float32"},
+    },
+    block_size_mib=8,
+)
+
+add_features_to_h5ad(
+    base,
+    {
+        "version": 1,
+        "output": {"dtype": "float32"},
+        "feature_policy": {"on_error": "nan"},
+        "features": [{"name": "rms", "source": "waveform"}],
+    },
+    output="dataset_features.h5ad",
+    block_rows=256,
+)
+```
+
+The large-file path is transactional: raw samples are read in observation blocks and the destination is replaced only after all feature blocks succeed.
+
+Install from PyPI after the first release:
+
+```bash
+python -m pip install vibframe-anndata
+```
+
+Install for development:
+
+```bash
+python -m pip install -e ".[dev]"
+```
+
+The repository intentionally does **not** version the project `data/` directory. The mandatory CI fixture is generated deterministically from versioned synthetic source.
+
+## License
+
+The software package is released under the **BSD 3-Clause License**, allowing academic and research users to inspect, modify and redistribute the code while retaining the copyright and license notices.
+
+The BSD license applies to the software source code distributed by this project. External or reference datasets, VibFrame captures and other third-party material are **not** relicensed by this repository unless explicitly stated. Release archives exclude VibFrame reference binaries and the local `data/` tree.
+
+## Documentation
+
+- [Documentation index](docs/index.md)
+- [Architecture](docs/ARCHITECTURE.md)
+- [AnnData data contract](docs/DATA_MODEL.md)
+- [Configuration](docs/CONFIGURATION.md)
+- [Metric support](docs/METRICS.md)
+- [Testing and CI](docs/TESTING.md)
+- [Known limitations](docs/LIMITATIONS.md)
+- [Requirements compliance](docs/REQUIREMENTS.md)
+- [0.1.0 release procedure](docs/RELEASE.md)
+- [Roadmap / 0.2.0 debt](docs/ROADMAP.md)
+- [Changelog](docs/CHANGELOG.md)

vibframe_anndata-0.1.0/README.md

@@ -0,0 +1,96 @@
+# VibFrame to AnnData
+
+Python package for staged conversion of TWave VibFrame data into reusable `AnnData` datasets.
+
+The workflow is intentionally split in two phases:
+
+1. **Ingest raw VibFrame data once** into an AnnData base (`obs`, `obsm`, `uns`).
+2. **Add, recalculate or remove features** from the raw signals already stored in AnnData, without reopening the original VibFrame.
+
+For datasets that fit comfortably in memory:
+
+```python
+from vibframe_anndata import add_features, import_raw, remove_features, write_h5ad
+
+adata = import_raw("dataset.vibframe.zip")
+write_h5ad(adata, "dataset_raw.h5ad")
+
+adata = add_features(
+    adata,
+    {
+        "version": 1,
+        "features": [
+            {"name": "rms", "source": "waveform"},
+            {"name": "kurtosis", "source": "waveform"},
+        ],
+    },
+)
+
+adata = remove_features(adata, ["kurtosis"])
+write_h5ad(adata, "dataset_features.h5ad")
+```
+
+For datasets larger than RAM, use the blockwise H5AD APIs:
+
+```python
+from vibframe_anndata import import_raw_to_h5ad, add_features_to_h5ad
+
+base = import_raw_to_h5ad(
+    "dataset.vibframe.zip",
+    "dataset_raw.h5ad",
+    config={
+        "version": 1,
+        "raw_import": {"on_missing_signal": "nan"},
+        "output": {"dtype": "float32"},
+    },
+    block_size_mib=8,
+)
+
+add_features_to_h5ad(
+    base,
+    {
+        "version": 1,
+        "output": {"dtype": "float32"},
+        "feature_policy": {"on_error": "nan"},
+        "features": [{"name": "rms", "source": "waveform"}],
+    },
+    output="dataset_features.h5ad",
+    block_rows=256,
+)
+```
+
+The large-file path is transactional: raw samples are read in observation blocks and the destination is replaced only after all feature blocks succeed.
+
+Install from PyPI after the first release:
+
+```bash
+python -m pip install vibframe-anndata
+```
+
+Install for development:
+
+```bash
+python -m pip install -e ".[dev]"
+```
+
+The repository intentionally does **not** version the project `data/` directory. The mandatory CI fixture is generated deterministically from versioned synthetic source.
+
+## License
+
+The software package is released under the **BSD 3-Clause License**, allowing academic and research users to inspect, modify and redistribute the code while retaining the copyright and license notices.
+
+The BSD license applies to the software source code distributed by this project. External or reference datasets, VibFrame captures and other third-party material are **not** relicensed by this repository unless explicitly stated. Release archives exclude VibFrame reference binaries and the local `data/` tree.
+
+## Documentation
+
+- [Documentation index](docs/index.md)
+- [Architecture](docs/ARCHITECTURE.md)
+- [AnnData data contract](docs/DATA_MODEL.md)
+- [Configuration](docs/CONFIGURATION.md)
+- [Metric support](docs/METRICS.md)
+- [Testing and CI](docs/TESTING.md)
+- [Known limitations](docs/LIMITATIONS.md)
+- [Requirements compliance](docs/REQUIREMENTS.md)
+- [0.1.0 release procedure](docs/RELEASE.md)
+- [Roadmap / 0.2.0 debt](docs/ROADMAP.md)
+- [Changelog](docs/CHANGELOG.md)

vibframe_anndata-0.1.0/benchmarks/c_vs_numpy_v1_3/README.md

@@ -0,0 +1,32 @@
+# C vs NumPy benchmark — v1.3 evidence snapshot
+
+This directory contains the repository evidence extracted from the project benchmark archive supplied on 2026-09-10.
+
+Original archive:
+
+- filename: `vibframe_c_vs_numpy_benchmark_v1_3.zip`
+- size: `73643220` bytes
+- SHA-256: `fc815489034d5964841bedbd3cffd7308a34b651be7f9fc4ee0794130774fe3f`
+
+The supplied archive also bundles compiled macOS artefacts and downloaded DuckDB binaries. Those third-party/generated binaries are deliberately not copied into this repository.
+
+## Preserved here
+
+The repository keeps the pieces required to audit the decision without vendoring large binaries:
+
+- the exact C implementation of the six benchmark statistics;
+- the corresponding NumPy implementation;
+- the exact C/NumPy equivalence smoke test;
+- the captured benchmark environment;
+- a compact performance table covering every recorded scenario;
+- maximum numerical error by metric.
+
+The complete methodology and interpretation are documented in [`docs/BENCHMARK.md`](../../docs/BENCHMARK.md).
+
+## Scope
+
+The benchmark metrics are:
+
+`peak_positive`, `peak_negative`, `p2p`, `rms`, `crest_factor`, and `kurtosis`.
+
+This benchmark is evidence for the NumPy-vs-C implementation decision. It is separate from the catalog-level T8/VibFrame regression against `trends.parquet`.

vibframe_anndata-0.1.0/benchmarks/c_vs_numpy_v1_3/benchmark/metrics_common.py

@@ -0,0 +1,33 @@
+from __future__ import annotations
+import numpy as np
+
+METRIC_NAMES = (
+    "peak_positive",
+    "peak_negative",
+    "p2p",
+    "rms",
+    "crest_factor",
+    "kurtosis",
+)
+
+
+def compute_numpy(x: np.ndarray) -> np.ndarray:
+    peak_pos = float(np.max(x))
+    peak_neg = float(np.min(x))
+    rms = float(np.sqrt(np.mean(x * x)))
+    mean = float(np.mean(x))
+    centered = x - mean
+    m2 = float(np.mean(centered * centered))
+    m4 = float(np.mean((centered * centered) ** 2))
+    peak_abs = max(abs(peak_pos), abs(peak_neg))
+    return np.array(
+        [
+            peak_pos,
+            peak_neg,
+            peak_pos - peak_neg,
+            rms,
+            peak_abs / rms if rms > 0.0 else 0.0,
+            m4 / (m2 * m2) if m2 > 0.0 else 0.0,
+        ],
+        dtype=np.float64,
+    )

vibframe_anndata-0.1.0/benchmarks/c_vs_numpy_v1_3/benchmark/platform_utils.py

@@ -0,0 +1,23 @@
+from __future__ import annotations
+import platform
+import resource
+from pathlib import Path
+
+
+def shared_library_name() -> str:
+    return "libvibmetrics.dylib" if platform.system() == "Darwin" else "libvibmetrics.so"
+
+
+def shared_library_path(root: Path) -> Path:
+    return root / "build" / shared_library_name()
+
+
+def peak_rss_kib() -> int:
+    """Return ru_maxrss normalized to KiB on Linux and macOS.
+
+    Linux reports ru_maxrss in KiB; macOS reports bytes.
+    """
+    rss = int(resource.getrusage(resource.RUSAGE_SELF).ru_maxrss)
+    if platform.system() == "Darwin":
+        rss //= 1024
+    return rss

vibframe_anndata-0.1.0/benchmarks/c_vs_numpy_v1_3/results/environment.json

@@ -0,0 +1,24 @@
+{
+  "created_at": "2026-09-04T12:40:11+0200",
+  "platform": "macOS-26.6.2-arm64-arm-64bit",
+  "machine": "arm64",
+  "python": "3.9.6 (default, Apr  7 2026, 02:38:40) \n[Clang 21.0.0 (clang-2100.0.123.102)]",
+  "numpy": "2.0.2",
+  "pyarrow": "21.0.0",
+  "duckdb_c_api": "1.5.5",
+  "cpu_count_logical": 6,
+  "trials": 4,
+  "repeats": 1,
+  "compression": "snappy",
+  "scale_sizes_payload_mib": [
+    4,
+    16,
+    64,
+    256,
+    512,
+    1024,
+    2048
+  ],
+  "native_enabled": true,
+  "note": "target_mib is decoded float64 payload; physical Parquet size is recorded separately"
+}

vibframe_anndata-0.1.0/benchmarks/c_vs_numpy_v1_3/results/numerical_error_max.csv

@@ -0,0 +1,7 @@
+metric,max_abs_error,max_rel_error,max_mean_abs_error,max_rmse
+crest_factor,1.5276668818842157e-13,1.9091554498552136e-14,4.4117487441042164e-14,5.3173192662063305e-14
+kurtosis,3.312905505481467e-13,9.622538579227361e-14,9.02333763264096e-14,1.0694208517255857e-13
+p2p,0.0,0.0,0.0,0.0
+peak_negative,0.0,0.0,0.0,0.0
+peak_positive,0.0,0.0,0.0,0.0
+rms,1.63202784619898e-14,1.916619150647869e-14,5.009881398621019e-15,6.0817020147297566e-15