vfbquery 0.5.2__tar.gz → 0.5.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (46) hide show
  1. {vfbquery-0.5.2/src/vfbquery.egg-info → vfbquery-0.5.4}/PKG-INFO +1 -1
  2. {vfbquery-0.5.2 → vfbquery-0.5.4}/setup.py +1 -1
  3. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/__init__.py +1 -1
  4. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/solr_result_cache.py +3 -1
  5. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/vfb_queries.py +16 -2
  6. {vfbquery-0.5.2 → vfbquery-0.5.4/src/vfbquery.egg-info}/PKG-INFO +1 -1
  7. {vfbquery-0.5.2 → vfbquery-0.5.4}/LICENSE +0 -0
  8. {vfbquery-0.5.2 → vfbquery-0.5.4}/README.md +0 -0
  9. {vfbquery-0.5.2 → vfbquery-0.5.4}/pyproject.toml +0 -0
  10. {vfbquery-0.5.2 → vfbquery-0.5.4}/setup.cfg +0 -0
  11. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/__init__.py +0 -0
  12. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/readme_parser.py +0 -0
  13. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/term_info_queries_test.py +0 -0
  14. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_dataset_template_queries.py +0 -0
  15. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_default_caching.py +0 -0
  16. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_examples_code.py +0 -0
  17. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_examples_diff.py +0 -0
  18. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_expression_overlaps.py +0 -0
  19. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_expression_pattern_fragments.py +0 -0
  20. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_images_neurons.py +0 -0
  21. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_images_that_develop_from.py +0 -0
  22. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_lineage_clones_in.py +0 -0
  23. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_nblast_queries.py +0 -0
  24. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_neuron_classes_fasciculating.py +0 -0
  25. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_neuron_inputs.py +0 -0
  26. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_neuron_neuron_connectivity.py +0 -0
  27. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_neuron_region_connectivity.py +0 -0
  28. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_neurons_part_here.py +0 -0
  29. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_new_owlery_queries.py +0 -0
  30. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_publication_transgene_queries.py +0 -0
  31. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_query_performance.py +0 -0
  32. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_similar_morphology.py +0 -0
  33. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_tracts_nerves_innervating.py +0 -0
  34. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/test/test_transcriptomics.py +0 -0
  35. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/cache_enhancements.py +0 -0
  36. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/cached_functions.py +0 -0
  37. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/neo4j_client.py +0 -0
  38. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/owlery_client.py +0 -0
  39. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/solr_cache_integration.py +0 -0
  40. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/solr_fetcher.py +0 -0
  41. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/term_info_queries.py +0 -0
  42. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery/test_utils.py +0 -0
  43. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery.egg-info/SOURCES.txt +0 -0
  44. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery.egg-info/dependency_links.txt +0 -0
  45. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery.egg-info/requires.txt +0 -0
  46. {vfbquery-0.5.2 → vfbquery-0.5.4}/src/vfbquery.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: vfbquery
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- Version: 0.5.2
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+ Version: 0.5.4
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  Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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  Home-page: https://github.com/VirtualFlyBrain/VFBquery
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  Author: VirtualFlyBrain
@@ -3,7 +3,7 @@ from os import path
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  here = path.abspath(path.dirname(__file__))
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- __version__ = "0.5.2"
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+ __version__ = "0.5.4"
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  # Get the long description from the README file
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  with open(path.join(here, 'README.md')) as f:
@@ -95,4 +95,4 @@ except ImportError:
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  __solr_caching_available__ = False
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  # Version information
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- __version__ = "0.5.2"
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+ __version__ = "0.5.4"
@@ -660,7 +660,9 @@ def with_solr_cache(query_type: str):
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  'similar_morphology_part_of', 'similar_morphology_part_of_exp',
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  'similar_morphology_nb', 'similar_morphology_nb_exp',
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  'similar_morphology_userdata', 'neurons_part_here', 'neurons_synaptic',
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- 'neurons_presynaptic', 'neurons_postsynaptic']
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+ 'neurons_presynaptic', 'neurons_postsynaptic', 'neuron_neuron_connectivity_query',
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+ 'neuron_region_connectivity_query', 'instances', 'templates', 'images_neurons',
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+ 'images_that_develop_from', 'expression_pattern_fragments']
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  if query_type in dataframe_query_types:
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  return_dataframe = kwargs.get('return_dataframe', True) # Default is True
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  cache_term_id = f"{cache_term_id}_dataframe_{return_dataframe}"
@@ -2698,7 +2698,7 @@ def get_neuron_neuron_connectivity(short_form: str, return_dataframe=True, limit
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  }
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  return {
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  'headers': headers,
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- 'data': rows,
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+ 'rows': rows,
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  'count': len(rows)
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  }
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@@ -2756,7 +2756,7 @@ def get_neuron_region_connectivity(short_form: str, return_dataframe=True, limit
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  }
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  return {
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  'headers': headers,
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- 'data': rows,
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+ 'rows': rows,
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  'count': len(rows)
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  }
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@@ -3924,6 +3924,20 @@ def fill_query_results(term_info):
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  filtered_item = item
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  filtered_result.append(filtered_item)
3926
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3927
+ if 'headers' in result:
3928
+ if 'preview_columns' in query.keys() and len(query['preview_columns']) > 0:
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+ filtered_headers = {col: result['headers'][col] for col in query['preview_columns']}
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+ else:
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+ filtered_headers = result['headers']
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+ elif isinstance(result, dict) and 'data' in result:
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+ # Handle legacy 'data' key as alias for 'rows'
3934
+ for item in result['data']:
3935
+ if 'preview_columns' in query.keys() and len(query['preview_columns']) > 0:
3936
+ filtered_item = {col: item[col] for col in query['preview_columns']}
3937
+ else:
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+ filtered_item = item
3939
+ filtered_result.append(filtered_item)
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+
3927
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  if 'headers' in result:
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  if 'preview_columns' in query.keys() and len(query['preview_columns']) > 0:
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  filtered_headers = {col: result['headers'][col] for col in query['preview_columns']}
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: vfbquery
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- Version: 0.5.2
3
+ Version: 0.5.4
4
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  Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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5
  Home-page: https://github.com/VirtualFlyBrain/VFBquery
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  Author: VirtualFlyBrain
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