vfbquery 0.4.0__tar.gz → 0.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. {vfbquery-0.4.0/src/vfbquery.egg-info → vfbquery-0.5.0}/PKG-INFO +1023 -65
  2. {vfbquery-0.4.0 → vfbquery-0.5.0}/README.md +1023 -65
  3. {vfbquery-0.4.0 → vfbquery-0.5.0}/setup.py +1 -1
  4. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/test/readme_parser.py +35 -1
  5. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/test/term_info_queries_test.py +11 -11
  6. vfbquery-0.5.0/src/test/test_dataset_template_queries.py +138 -0
  7. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/test/test_default_caching.py +15 -11
  8. vfbquery-0.5.0/src/test/test_expression_overlaps.py +183 -0
  9. vfbquery-0.5.0/src/test/test_expression_pattern_fragments.py +123 -0
  10. vfbquery-0.5.0/src/test/test_images_neurons.py +152 -0
  11. vfbquery-0.5.0/src/test/test_images_that_develop_from.py +112 -0
  12. vfbquery-0.5.0/src/test/test_lineage_clones_in.py +190 -0
  13. vfbquery-0.5.0/src/test/test_nblast_queries.py +124 -0
  14. vfbquery-0.5.0/src/test/test_neuron_classes_fasciculating.py +187 -0
  15. vfbquery-0.5.0/src/test/test_neuron_inputs.py +193 -0
  16. vfbquery-0.5.0/src/test/test_neuron_neuron_connectivity.py +89 -0
  17. vfbquery-0.5.0/src/test/test_neuron_region_connectivity.py +117 -0
  18. vfbquery-0.5.0/src/test/test_neurons_part_here.py +204 -0
  19. vfbquery-0.5.0/src/test/test_new_owlery_queries.py +282 -0
  20. vfbquery-0.5.0/src/test/test_publication_transgene_queries.py +101 -0
  21. vfbquery-0.5.0/src/test/test_query_performance.py +743 -0
  22. vfbquery-0.5.0/src/test/test_similar_morphology.py +177 -0
  23. vfbquery-0.5.0/src/test/test_tracts_nerves_innervating.py +188 -0
  24. vfbquery-0.5.0/src/test/test_transcriptomics.py +223 -0
  25. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/__init__.py +22 -1
  26. vfbquery-0.5.0/src/vfbquery/neo4j_client.py +120 -0
  27. vfbquery-0.5.0/src/vfbquery/owlery_client.py +463 -0
  28. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/solr_fetcher.py +1 -1
  29. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/solr_result_cache.py +238 -53
  30. vfbquery-0.5.0/src/vfbquery/vfb_queries.py +3929 -0
  31. {vfbquery-0.4.0 → vfbquery-0.5.0/src/vfbquery.egg-info}/PKG-INFO +1023 -65
  32. vfbquery-0.5.0/src/vfbquery.egg-info/SOURCES.txt +43 -0
  33. vfbquery-0.4.0/src/vfbquery/vfb_queries.py +0 -1598
  34. vfbquery-0.4.0/src/vfbquery.egg-info/SOURCES.txt +0 -23
  35. {vfbquery-0.4.0 → vfbquery-0.5.0}/LICENSE +0 -0
  36. {vfbquery-0.4.0 → vfbquery-0.5.0}/pyproject.toml +0 -0
  37. {vfbquery-0.4.0 → vfbquery-0.5.0}/setup.cfg +0 -0
  38. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/test/__init__.py +0 -0
  39. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/test/test_examples_diff.py +0 -0
  40. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/cache_enhancements.py +0 -0
  41. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/cached_functions.py +0 -0
  42. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/solr_cache_integration.py +0 -0
  43. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/term_info_queries.py +0 -0
  44. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery/test_utils.py +0 -0
  45. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery.egg-info/dependency_links.txt +0 -0
  46. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery.egg-info/requires.txt +0 -0
  47. {vfbquery-0.4.0 → vfbquery-0.5.0}/src/vfbquery.egg-info/top_level.txt +0 -0
{vfbquery-0.4.0/src/vfbquery.egg-info → vfbquery-0.5.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: vfbquery
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- Version: 0.4.0
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+ Version: 0.5.0
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  Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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  Home-page: https://github.com/VirtualFlyBrain/VFBquery
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  Author: VirtualFlyBrain
@@ -34,7 +34,7 @@ import vfbquery as vfb
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  ```
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  Class example:
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  ```python
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- vfb.get_term_info('FBbt_00003748')
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+ vfb.get_term_info('FBbt_00003748', force_refresh=True)
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  ```
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  ```json
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  {
@@ -117,34 +117,1001 @@ vfb.get_term_info('FBbt_00003748')
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  "id": "VFB_00102107",
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  "label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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  "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018Unisex](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018Unisex')](VFB_00101567,VFB_00102107)"
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+ "thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png 'ME on JRC2018Unisex adult brain aligned to JRC2018U')](VFB_00101567,VFB_00102107)"
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  },
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  {
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  "id": "VFB_00101385",
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- "label": "[ME%28R%29 on JRC_FlyEM_Hemibrain](VFB_00101385)",
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+ "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
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  "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain')](VFB_00101384,VFB_00101385)"
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+ "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
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  },
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  {
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  "id": "VFB_00030810",
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  "label": "[medulla on adult brain template Ito2014](VFB_00030810)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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+ "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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  "thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png 'medulla on adult brain template Ito2014 aligned to adult brain template Ito2014')](VFB_00030786,VFB_00030810)"
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  },
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  {
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- "id": "VFB_00030624",
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- "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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- "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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- "thumbnail": "[![medulla on adult brain template JFRC2 aligned to adult brain template JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to adult brain template JFRC2')](VFB_00017894,VFB_00030624)"
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+ "id": "VFB_00030624",
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+ "label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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+ "tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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+ "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
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+ }
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+ ]
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+ },
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+ "output_format": "table",
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+ "count": 4
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+ },
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+ {
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+ "query": "NeuronsPartHere",
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+ "label": "Neurons with some part in medulla",
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+ "function": "get_neurons_with_part_in",
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+ "takes": {
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+ "short_form": {
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+ "$and": [
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+ "Class",
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+ "Anatomy"
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+ ]
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+ },
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+ "default": {
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+ "short_form": "FBbt_00003748"
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+ }
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+ },
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+ "preview": 5,
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+ "preview_columns": [
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+ "id",
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+ "label",
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+ "tags",
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+ "thumbnail"
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+ ],
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+ "preview_results": {
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+ "headers": {
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+ "id": {
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+ "title": "Add",
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+ "type": "selection_id",
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+ "order": -1
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+ },
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+ "label": {
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+ "title": "Name",
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+ "type": "markdown",
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+ "order": 0,
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+ "sort": {
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+ "0": "Asc"
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+ }
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+ },
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+ "tags": {
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+ "title": "Tags",
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+ "type": "tags",
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+ "order": 2
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+ },
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+ "thumbnail": {
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+ "title": "Thumbnail",
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+ "type": "markdown",
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+ "order": 9
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+ }
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+ },
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+ "rows": [
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+ {
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+ "id": "FBbt_20011362",
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+ "label": "[Cm1](FBbt_20011362)",
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+ "tags": "Adult|Cholinergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![FlyWire:720575940621358986 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw08/9799/VFB_00101567/thumbnail.png 'FlyWire:720575940621358986 aligned to JRC2018U')](FBbt_20011362)"
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+ },
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+ {
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+ "id": "FBbt_20011363",
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+ "label": "[Cm10](FBbt_20011363)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![FlyWire:720575940629671015 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw11/8027/VFB_00101567/thumbnail.png 'FlyWire:720575940629671015 aligned to JRC2018U')](FBbt_20011363)"
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+ },
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+ {
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+ "id": "FBbt_20011364",
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+ "label": "[Cm15](FBbt_20011364)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![FlyWire:720575940611214802 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw11/4277/VFB_00101567/thumbnail.png 'FlyWire:720575940611214802 aligned to JRC2018U')](FBbt_20011364)"
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+ },
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+ {
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+ "id": "FBbt_20011365",
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+ "label": "[Cm16](FBbt_20011365)",
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+ "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![FlyWire:720575940631561002 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw09/9899/VFB_00101567/thumbnail.png 'FlyWire:720575940631561002 aligned to JRC2018U')](FBbt_20011365)"
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+ },
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+ {
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+ "id": "FBbt_20011366",
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+ "label": "[Cm17](FBbt_20011366)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![FlyWire:720575940624043817 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1609/VFB_00101567/thumbnail.png 'FlyWire:720575940624043817 aligned to JRC2018U')](FBbt_20011366)"
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+ }
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+ ]
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+ },
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+ "output_format": "table",
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+ "count": 472
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+ },
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+ {
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+ "query": "NeuronsSynaptic",
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+ "label": "Neurons with synaptic terminals in medulla",
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+ "function": "get_neurons_with_synapses_in",
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+ "takes": {
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+ "short_form": {
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+ "$and": [
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+ "Class",
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+ "Anatomy"
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+ ]
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+ },
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+ "default": {
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+ "short_form": "FBbt_00003748"
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+ }
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+ },
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+ "preview": 5,
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+ "preview_columns": [
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+ "id",
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+ "label",
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+ "tags",
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+ "thumbnail"
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+ ],
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+ "preview_results": {
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+ "headers": {
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+ "id": {
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+ "title": "Add",
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+ "type": "selection_id",
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+ "order": -1
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+ },
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+ "label": {
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+ "title": "Name",
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+ "type": "markdown",
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+ "order": 0,
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+ "sort": {
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+ "0": "Asc"
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+ }
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+ },
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+ "tags": {
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+ "title": "Tags",
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+ "type": "tags",
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+ "order": 2
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+ },
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+ "thumbnail": {
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+ "title": "Thumbnail",
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+ "type": "markdown",
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+ "order": 9
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+ }
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+ },
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+ "rows": [
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+ {
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+ "id": "FBbt_00053385",
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+ "label": "[medulla intrinsic neuron](FBbt_00053385)",
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+ "tags": "Adult|Nervous_system|Neuron|Visual_system",
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+ "thumbnail": "[![ME.8543 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/0696/VFB_00101567/thumbnail.png 'ME.8543 aligned to JRC2018U')](FBbt_00053385)"
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+ },
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+ {
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+ "id": "FBbt_00110033",
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+ "label": "[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)",
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+ "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
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+ "thumbnail": ""
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+ },
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+ {
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+ "id": "FBbt_00110142",
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+ "label": "[OA-AL2i2](FBbt_00110142)",
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+ "tags": "Adult|Nervous_system|Octopaminergic",
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+ "thumbnail": "[![SPS.ME.7 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw04/2336/VFB_00101567/thumbnail.png 'SPS.ME.7 aligned to JRC2018U')](FBbt_00110142)"
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+ },
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+ {
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+ "id": "FBbt_00110143",
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+ "label": "[OA-AL2i3](FBbt_00110143)",
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+ "tags": "Adult|Nervous_system|Octopaminergic|Visual_system",
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+ "thumbnail": "[![ME.970 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw03/6562/VFB_00101567/thumbnail.png 'ME.970 aligned to JRC2018U')](FBbt_00110143)"
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+ },
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+ {
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+ "id": "FBbt_00110144",
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+ "label": "[OA-AL2i4](FBbt_00110144)",
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+ "tags": "Adult|Nervous_system|Octopaminergic",
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+ "thumbnail": "[![OA-AL2i4_R (JRC_OpticLobe:10677) aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/450b/VFB_00101567/thumbnail.png 'OA-AL2i4_R (JRC_OpticLobe:10677) aligned to JRC2018U')](FBbt_00110144)"
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+ }
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+ ]
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+ },
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+ "output_format": "table",
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+ "count": 465
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+ },
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+ {
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+ "query": "NeuronsPresynapticHere",
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+ "label": "Neurons with presynaptic terminals in medulla",
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+ "function": "get_neurons_with_presynaptic_terminals_in",
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+ "takes": {
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+ "short_form": {
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+ "$and": [
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+ "Class",
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+ "Anatomy"
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+ ]
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+ },
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+ "default": {
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+ "short_form": "FBbt_00003748"
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+ }
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+ },
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+ "preview": 5,
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+ "preview_columns": [
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+ "id",
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+ "label",
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+ "tags",
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+ "thumbnail"
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+ ],
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+ "preview_results": {
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+ "headers": {
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+ "id": {
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+ "title": "Add",
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+ "type": "selection_id",
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+ "order": -1
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+ },
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+ "label": {
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+ "title": "Name",
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+ "type": "markdown",
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+ "order": 0,
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+ "sort": {
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+ "0": "Asc"
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+ }
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+ },
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+ "tags": {
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+ "title": "Tags",
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+ "type": "tags",
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+ "order": 2
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+ },
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+ "thumbnail": {
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+ "title": "Thumbnail",
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+ "type": "markdown",
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+ "order": 9
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+ }
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+ },
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+ "rows": [
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+ {
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+ "id": "FBbt_02000003",
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+ "label": "[yR8](FBbt_02000003)",
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+ "tags": "Adult|Cholinergic|Histaminergic|Nervous_system|Sensory_neuron|Visual_system",
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+ "thumbnail": "[![R8y_R (JRC_OpticLobe:203836) aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/48b9/VFB_00101567/thumbnail.png 'R8y_R (JRC_OpticLobe:203836) aligned to JRC2018U')](FBbt_02000003)"
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+ },
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+ {
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+ "id": "FBbt_20007253",
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+ "label": "[CB3838](FBbt_20007253)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![ME.38 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2030/VFB_00101567/thumbnail.png 'ME.38 aligned to JRC2018U')](FBbt_20007253)"
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+ },
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+ {
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+ "id": "FBbt_20007256",
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+ "label": "[Cm31a](FBbt_20007256)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![ME.5 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2043/VFB_00101567/thumbnail.png 'ME.5 aligned to JRC2018U')](FBbt_20007256)"
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+ },
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+ {
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+ "id": "FBbt_20007257",
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+ "label": "[Mi19](FBbt_20007257)",
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+ "tags": "Adult|Nervous_system|Neuron|Visual_system",
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+ "thumbnail": "[![ME.5256 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1990/VFB_00101567/thumbnail.png 'ME.5256 aligned to JRC2018U')](FBbt_20007257)"
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+ },
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+ {
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+ "id": "FBbt_20007258",
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+ "label": "[Cm35](FBbt_20007258)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
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+ "thumbnail": "[![ME.18 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2034/VFB_00101567/thumbnail.png 'ME.18 aligned to JRC2018U')](FBbt_20007258)"
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+ }
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+ ]
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+ },
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+ "output_format": "table",
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+ "count": 253
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+ },
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+ {
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+ "query": "NeuronsPostsynapticHere",
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+ "label": "Neurons with postsynaptic terminals in medulla",
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+ "function": "get_neurons_with_postsynaptic_terminals_in",
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+ "takes": {
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+ "short_form": {
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+ "$and": [
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+ "Class",
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+ "Anatomy"
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+ ]
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+ },
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+ "default": {
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+ "short_form": "FBbt_00003748"
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+ }
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+ },
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+ "preview": 5,
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+ "preview_columns": [
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+ "id",
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+ "label",
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+ "tags",
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+ "thumbnail"
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+ ],
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+ "preview_results": {
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+ "headers": {
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+ "id": {
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+ "title": "Add",
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+ "type": "selection_id",
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+ "order": -1
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+ },
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+ "label": {
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+ "title": "Name",
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+ "type": "markdown",
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+ "order": 0,
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+ "sort": {
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+ "0": "Asc"
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+ }
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+ },
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+ "tags": {
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+ "title": "Tags",
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+ "type": "tags",
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+ "order": 2
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+ },
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+ "thumbnail": {
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+ "title": "Thumbnail",
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+ "type": "markdown",
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+ "order": 9
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+ }
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+ },
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+ "rows": [
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+ {
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+ "id": "FBbt_20007253",
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+ "label": "[CB3838](FBbt_20007253)",
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+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
450
+ "thumbnail": "[![ME.38 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2030/VFB_00101567/thumbnail.png 'ME.38 aligned to JRC2018U')](FBbt_20007253)"
451
+ },
452
+ {
453
+ "id": "FBbt_20007256",
454
+ "label": "[Cm31a](FBbt_20007256)",
455
+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
456
+ "thumbnail": "[![ME.5 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2043/VFB_00101567/thumbnail.png 'ME.5 aligned to JRC2018U')](FBbt_20007256)"
457
+ },
458
+ {
459
+ "id": "FBbt_20007257",
460
+ "label": "[Mi19](FBbt_20007257)",
461
+ "tags": "Adult|Nervous_system|Neuron|Visual_system",
462
+ "thumbnail": "[![ME.5256 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1990/VFB_00101567/thumbnail.png 'ME.5256 aligned to JRC2018U')](FBbt_20007257)"
463
+ },
464
+ {
465
+ "id": "FBbt_20007258",
466
+ "label": "[Cm35](FBbt_20007258)",
467
+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
468
+ "thumbnail": "[![ME.18 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/2034/VFB_00101567/thumbnail.png 'ME.18 aligned to JRC2018U')](FBbt_20007258)"
469
+ },
470
+ {
471
+ "id": "FBbt_20007259",
472
+ "label": "[Cm32](FBbt_20007259)",
473
+ "tags": "Adult|GABAergic|Nervous_system|Visual_system",
474
+ "thumbnail": "[![ME.278 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/fw06/1913/VFB_00101567/thumbnail.png 'ME.278 aligned to JRC2018U')](FBbt_20007259)"
475
+ }
476
+ ]
477
+ },
478
+ "output_format": "table",
479
+ "count": 331
480
+ },
481
+ {
482
+ "query": "PartsOf",
483
+ "label": "Parts of medulla",
484
+ "function": "get_parts_of",
485
+ "takes": {
486
+ "short_form": {
487
+ "$and": [
488
+ "Class"
489
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490
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491
+ "default": {
492
+ "short_form": "FBbt_00003748"
493
+ }
494
+ },
495
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+ "preview_columns": [
497
+ "id",
498
+ "label",
499
+ "tags",
500
+ "thumbnail"
501
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502
+ "preview_results": {
503
+ "headers": {
504
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505
+ "title": "Add",
506
+ "type": "selection_id",
507
+ "order": -1
508
+ },
509
+ "label": {
510
+ "title": "Name",
511
+ "type": "markdown",
512
+ "order": 0,
513
+ "sort": {
514
+ "0": "Asc"
515
+ }
516
+ },
517
+ "tags": {
518
+ "title": "Tags",
519
+ "type": "tags",
520
+ "order": 2
521
+ },
522
+ "thumbnail": {
523
+ "title": "Thumbnail",
524
+ "type": "markdown",
525
+ "order": 9
526
+ }
527
+ },
528
+ "rows": [
529
+ {
530
+ "id": "FBbt_00003750",
531
+ "label": "[medulla layer M1](FBbt_00003750)",
532
+ "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
533
+ "thumbnail": ""
534
+ },
535
+ {
536
+ "id": "FBbt_00003753",
537
+ "label": "[medulla layer M4](FBbt_00003753)",
538
+ "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
539
+ "thumbnail": ""
540
+ },
541
+ {
542
+ "id": "FBbt_00003754",
543
+ "label": "[medulla layer M5](FBbt_00003754)",
544
+ "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
545
+ "thumbnail": ""
546
+ },
547
+ {
548
+ "id": "FBbt_00003758",
549
+ "label": "[medulla layer M8](FBbt_00003758)",
550
+ "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
551
+ "thumbnail": ""
552
+ },
553
+ {
554
+ "id": "FBbt_00003759",
555
+ "label": "[medulla layer M9](FBbt_00003759)",
556
+ "tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
557
+ "thumbnail": ""
558
+ }
559
+ ]
560
+ },
561
+ "output_format": "table",
562
+ "count": 28
563
+ },
564
+ {
565
+ "query": "SubclassesOf",
566
+ "label": "Subclasses of medulla",
567
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568
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569
+ "short_form": {
570
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571
+ "Class"
572
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573
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574
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575
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576
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577
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580
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581
+ "label",
582
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583
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584
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585
+ "preview_results": {
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587
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588
+ "title": "Add",
589
+ "type": "selection_id",
590
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591
+ },
592
+ "label": {
593
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594
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595
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596
+ "sort": {
597
+ "0": "Asc"
598
+ }
599
+ },
600
+ "tags": {
601
+ "title": "Tags",
602
+ "type": "tags",
603
+ "order": 2
604
+ },
605
+ "thumbnail": {
606
+ "title": "Thumbnail",
607
+ "type": "markdown",
608
+ "order": 9
609
+ }
610
+ }
611
+ },
612
+ "output_format": "table",
613
+ "count": 0
614
+ },
615
+ {
616
+ "query": "TractsNervesInnervatingHere",
617
+ "label": "Tracts/nerves innervating medulla",
618
+ "function": "get_tracts_nerves_innervating_here",
619
+ "takes": {
620
+ "short_form": {
621
+ "$or": [
622
+ {
623
+ "$and": [
624
+ "Class",
625
+ "Synaptic_neuropil"
626
+ ]
627
+ },
628
+ {
629
+ "$and": [
630
+ "Class",
631
+ "Synaptic_neuropil_domain"
632
+ ]
633
+ }
634
+ ]
635
+ },
636
+ "default": {
637
+ "short_form": "FBbt_00003748"
638
+ }
639
+ },
640
+ "preview": 5,
641
+ "preview_columns": [
642
+ "id",
643
+ "label",
644
+ "tags",
645
+ "thumbnail"
646
+ ],
647
+ "preview_results": {
648
+ "headers": {
649
+ "id": {
650
+ "title": "Add",
651
+ "type": "selection_id",
652
+ "order": -1
653
+ },
654
+ "label": {
655
+ "title": "Name",
656
+ "type": "markdown",
657
+ "order": 0,
658
+ "sort": {
659
+ "0": "Asc"
660
+ }
661
+ },
662
+ "tags": {
663
+ "title": "Tags",
664
+ "type": "tags",
665
+ "order": 2
666
+ },
667
+ "thumbnail": {
668
+ "title": "Thumbnail",
669
+ "type": "markdown",
670
+ "order": 9
671
+ }
672
+ },
673
+ "rows": [
674
+ {
675
+ "id": "FBbt_00003922",
676
+ "label": "[second optic chiasma](FBbt_00003922)",
677
+ "tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
678
+ "thumbnail": ""
679
+ },
680
+ {
681
+ "id": "FBbt_00005810",
682
+ "label": "[first optic chiasma](FBbt_00005810)",
683
+ "tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
684
+ "thumbnail": ""
685
+ },
686
+ {
687
+ "id": "FBbt_00007427",
688
+ "label": "[posterior optic commissure](FBbt_00007427)",
689
+ "tags": "Adult|Nervous_system|Neuron_projection_bundle",
690
+ "thumbnail": "[![posterior optic commissure on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0828/VFB_00030786/thumbnail.png 'posterior optic commissure on adult brain template Ito2014 aligned to adult brain template Ito2014')](FBbt_00007427)"
691
+ }
692
+ ]
693
+ },
694
+ "output_format": "table",
695
+ "count": 3
696
+ },
697
+ {
698
+ "query": "LineageClonesIn",
699
+ "label": "Lineage clones found in medulla",
700
+ "function": "get_lineage_clones_in",
701
+ "takes": {
702
+ "short_form": {
703
+ "$and": [
704
+ "Class",
705
+ "Synaptic_neuropil"
706
+ ]
707
+ },
708
+ "default": {
709
+ "short_form": "FBbt_00003748"
710
+ }
711
+ },
712
+ "preview": 5,
713
+ "preview_columns": [
714
+ "id",
715
+ "label",
716
+ "tags",
717
+ "thumbnail"
718
+ ],
719
+ "preview_results": {
720
+ "headers": {
721
+ "id": {
722
+ "title": "Add",
723
+ "type": "selection_id",
724
+ "order": -1
725
+ },
726
+ "label": {
727
+ "title": "Name",
728
+ "type": "markdown",
729
+ "order": 0,
730
+ "sort": {
731
+ "0": "Asc"
732
+ }
733
+ },
734
+ "tags": {
735
+ "title": "Tags",
736
+ "type": "tags",
737
+ "order": 2
738
+ },
739
+ "thumbnail": {
740
+ "title": "Thumbnail",
741
+ "type": "markdown",
742
+ "order": 9
743
+ }
744
+ },
745
+ "rows": [
746
+ {
747
+ "id": "FBbt_00050013",
748
+ "label": "[adult VPNl&d1 lineage clone](FBbt_00050013)",
749
+ "tags": "Adult|Clone",
750
+ "thumbnail": "[![VPNl&d1 clone of Ito 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0253/VFB_00101567/thumbnail.png 'VPNl&d1 clone of Ito 2013 aligned to JRC2018U')](FBbt_00050013)"
751
+ },
752
+ {
753
+ "id": "FBbt_00050019",
754
+ "label": "[adult DM1 lineage clone](FBbt_00050019)",
755
+ "tags": "Adult|Clone|lineage_DPMm1",
756
+ "thumbnail": "[![DM1 clone of Yu 2013 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0002/0006/VFB_00017894/thumbnail.png 'DM1 clone of Yu 2013 aligned to JFRC2')](FBbt_00050019)"
757
+ },
758
+ {
759
+ "id": "FBbt_00050051",
760
+ "label": "[adult VESa2 lineage clone](FBbt_00050051)",
761
+ "tags": "Adult|Clone|lineage_BAlp1",
762
+ "thumbnail": "[![PSa1 clone of Ito 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0206/VFB_00101567/thumbnail.png 'PSa1 clone of Ito 2013 aligned to JRC2018U')](FBbt_00050051)"
763
+ },
764
+ {
765
+ "id": "FBbt_00050167",
766
+ "label": "[adult LALv1 lineage clone](FBbt_00050167)",
767
+ "tags": "Adult|Clone|lineage_BAmv1",
768
+ "thumbnail": "[![LALv1 clone of Yu 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0056/VFB_00101567/thumbnail.png 'LALv1 clone of Yu 2013 aligned to JRC2018U')](FBbt_00050167)"
769
+ },
770
+ {
771
+ "id": "FBbt_00050229",
772
+ "label": "[adult SLPpl1 lineage clone](FBbt_00050229)",
773
+ "tags": "Adult|Clone|lineage_DPLl1",
774
+ "thumbnail": "[![SLPpl1 clone of Yu 2013 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0002/0077/VFB_00101567/thumbnail.png 'SLPpl1 clone of Yu 2013 aligned to JRC2018U')](FBbt_00050229)"
139
775
  }
140
776
  ]
141
777
  },
142
778
  "output_format": "table",
143
- "count": 4
779
+ "count": 7
780
+ },
781
+ {
782
+ "query": "ImagesNeurons",
783
+ "label": "Images of neurons with some part in medulla",
784
+ "function": "get_images_neurons",
785
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786
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787
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+ {
789
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792
+ ]
793
+ },
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+ {
795
+ "$and": [
796
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797
+ "Synaptic_neuropil_domain"
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+ ]
799
+ }
800
+ ]
801
+ },
802
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803
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804
+ }
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+ },
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+ "title": "Add",
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+ },
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+ "order": 0,
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825
+ "0": "Asc"
826
+ }
827
+ },
828
+ "tags": {
829
+ "title": "Tags",
830
+ "type": "tags",
831
+ "order": 2
832
+ },
833
+ "thumbnail": {
834
+ "title": "Thumbnail",
835
+ "type": "markdown",
836
+ "order": 9
837
+ }
838
+ },
839
+ "rows": [
840
+ {
841
+ "id": "VFB_fw113167",
842
+ "label": "[ME.11974](VFB_fw113167)",
843
+ "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
844
+ "thumbnail": ""
845
+ },
846
+ {
847
+ "id": "VFB_fw113165",
848
+ "label": "[ME.17216](VFB_fw113165)",
849
+ "tags": "Adult|GABAergic|Nervous_system|Visual_system|secondary_neuron",
850
+ "thumbnail": ""
851
+ },
852
+ {
853
+ "id": "VFB_fw113168",
854
+ "label": "[ME.31287](VFB_fw113168)",
855
+ "tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
856
+ "thumbnail": ""
857
+ },
858
+ {
859
+ "id": "VFB_fw113166",
860
+ "label": "[ME.4619](VFB_fw113166)",
861
+ "tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
862
+ "thumbnail": ""
863
+ },
864
+ {
865
+ "id": "VFB_fw113169",
866
+ "label": "[ME.26172](VFB_fw113169)",
867
+ "tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
868
+ "thumbnail": ""
869
+ }
870
+ ]
871
+ },
872
+ "output_format": "table",
873
+ "count": 119989
874
+ },
875
+ {
876
+ "query": "ExpressionOverlapsHere",
877
+ "label": "Expression patterns overlapping medulla",
878
+ "function": "get_expression_overlaps_here",
879
+ "takes": {
880
+ "short_form": {
881
+ "$and": [
882
+ "Class",
883
+ "Anatomy"
884
+ ]
885
+ },
886
+ "default": {
887
+ "short_form": "FBbt_00003748"
888
+ }
889
+ },
890
+ "preview": 5,
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+ "preview_columns": [
892
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893
+ "name",
894
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895
+ "pubs"
896
+ ],
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+ "preview_results": {
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+ "id": {
900
+ "title": "ID",
901
+ "type": "selection_id",
902
+ "order": -1
903
+ },
904
+ "name": {
905
+ "title": "Expression Pattern",
906
+ "type": "markdown",
907
+ "order": 0
908
+ },
909
+ "tags": {
910
+ "title": "Tags",
911
+ "type": "tags",
912
+ "order": 1
913
+ },
914
+ "pubs": {
915
+ "title": "Publications",
916
+ "type": "metadata",
917
+ "order": 2
918
+ }
919
+ },
920
+ "rows": [
921
+ {
922
+ "id": "VFBexp_FBti0182065",
923
+ "name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
924
+ "tags": "Expression_pattern",
925
+ "pubs": [
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927
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929
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931
+ "Entity",
932
+ "Individual",
933
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934
+ ],
935
+ "short_form": "FBrf0230454",
936
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937
+ },
938
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939
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940
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941
+ }
942
+ ]
943
+ },
944
+ {
945
+ "id": "VFBexp_FBti0145260",
946
+ "name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
947
+ "tags": "Expression_pattern",
948
+ "pubs": [
949
+ {
950
+ "core": {
951
+ "iri": "http://flybase.org/reports/FBrf0230454",
952
+ "symbol": "",
953
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954
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955
+ "Individual",
956
+ "pub"
957
+ ],
958
+ "short_form": "FBrf0230454",
959
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960
+ },
961
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962
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963
+ "DOI": "10.1016/j.cell.2015.11.022"
964
+ }
965
+ ]
966
+ },
967
+ {
968
+ "id": "VFBexp_FBti0143533",
969
+ "name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
970
+ "tags": "Expression_pattern",
971
+ "pubs": [
972
+ {
973
+ "core": {
974
+ "iri": "http://flybase.org/reports/FBrf0215202",
975
+ "symbol": "",
976
+ "types": [
977
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978
+ "Individual",
979
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980
+ ],
981
+ "short_form": "FBrf0215202",
982
+ "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
983
+ },
984
+ "FlyBase": "FBrf0215202",
985
+ "PubMed": "",
986
+ "DOI": ""
987
+ }
988
+ ]
989
+ },
990
+ {
991
+ "id": "VFBexp_FBti0143547",
992
+ "name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
993
+ "tags": "Expression_pattern",
994
+ "pubs": [
995
+ {
996
+ "core": {
997
+ "iri": "http://flybase.org/reports/FBrf0215202",
998
+ "symbol": "",
999
+ "types": [
1000
+ "Entity",
1001
+ "Individual",
1002
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1003
+ ],
1004
+ "short_form": "FBrf0215202",
1005
+ "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
1006
+ },
1007
+ "FlyBase": "FBrf0215202",
1008
+ "PubMed": "",
1009
+ "DOI": ""
1010
+ }
1011
+ ]
1012
+ },
1013
+ {
1014
+ "id": "VFBexp_FBti0143524",
1015
+ "name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
1016
+ "tags": "Expression_pattern",
1017
+ "pubs": [
1018
+ {
1019
+ "core": {
1020
+ "iri": "http://flybase.org/reports/FBrf0215202",
1021
+ "symbol": "",
1022
+ "types": [
1023
+ "Entity",
1024
+ "Individual",
1025
+ "pub"
1026
+ ],
1027
+ "short_form": "FBrf0215202",
1028
+ "label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
1029
+ },
1030
+ "FlyBase": "FBrf0215202",
1031
+ "PubMed": "",
1032
+ "DOI": ""
1033
+ }
1034
+ ]
1035
+ }
1036
+ ]
1037
+ },
1038
+ "output_format": "table",
1039
+ "count": 2339
1040
+ },
1041
+ {
1042
+ "query": "TransgeneExpressionHere",
1043
+ "label": "Transgene expression in medulla",
1044
+ "function": "get_transgene_expression_here",
1045
+ "takes": {
1046
+ "short_form": {
1047
+ "$and": [
1048
+ "Class",
1049
+ "Nervous_system",
1050
+ "Anatomy"
1051
+ ]
1052
+ },
1053
+ "default": {
1054
+ "short_form": "FBbt_00003748"
1055
+ }
1056
+ },
1057
+ "preview": 5,
1058
+ "preview_columns": [
1059
+ "id",
1060
+ "name",
1061
+ "tags"
1062
+ ],
1063
+ "preview_results": {
1064
+ "headers": {
1065
+ "id": {
1066
+ "title": "ID",
1067
+ "type": "selection_id",
1068
+ "order": -1
1069
+ },
1070
+ "name": {
1071
+ "title": "Expression Pattern",
1072
+ "type": "markdown",
1073
+ "order": 0
1074
+ },
1075
+ "tags": {
1076
+ "title": "Tags",
1077
+ "type": "tags",
1078
+ "order": 1
1079
+ }
1080
+ },
1081
+ "rows": [
1082
+ {
1083
+ "id": "VFBexp_FBti0182065",
1084
+ "name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
1085
+ "tags": "Expression_pattern"
1086
+ },
1087
+ {
1088
+ "id": "VFBexp_FBti0145260",
1089
+ "name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
1090
+ "tags": "Expression_pattern"
1091
+ },
1092
+ {
1093
+ "id": "VFBexp_FBti0143533",
1094
+ "name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
1095
+ "tags": "Expression_pattern"
1096
+ },
1097
+ {
1098
+ "id": "VFBexp_FBti0143547",
1099
+ "name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
1100
+ "tags": "Expression_pattern"
1101
+ },
1102
+ {
1103
+ "id": "VFBexp_FBti0143524",
1104
+ "name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
1105
+ "tags": "Expression_pattern"
1106
+ }
1107
+ ]
1108
+ },
1109
+ "output_format": "table",
1110
+ "count": 2339
144
1111
  }
145
1112
  ],
146
- "IsIndividual": false,
147
- "IsClass": true,
1113
+ "IsIndividual": False,
1114
+ "IsClass": True,
148
1115
  "Examples": {
149
1116
  "VFB_00101384": [
150
1117
  {
@@ -191,7 +1158,7 @@ vfb.get_term_info('FBbt_00003748')
191
1158
  }
192
1159
  ]
193
1160
  },
194
- "IsTemplate": false,
1161
+ "IsTemplate": False,
195
1162
  "Synonyms": [
196
1163
  {
197
1164
  "label": "ME",
@@ -1122,7 +2089,7 @@ vfb.get_instances('FBbt_00003748', return_dataframe=False)
1122
2089
  },
1123
2090
  {
1124
2091
  "id": "VFB_00101385",
1125
- "label": "[ME%28R%29 on JRC_FlyEM_Hemibrain](VFB_00101385)",
2092
+ "label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
1126
2093
  "tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
1127
2094
  "parent": "[medulla](FBbt_00003748)",
1128
2095
  "source": "",
@@ -1130,7 +2097,7 @@ vfb.get_instances('FBbt_00003748', return_dataframe=False)
1130
2097
  "template": "[JRCFIB2018Fum](VFB_00101384)",
1131
2098
  "dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
1132
2099
  "license": "",
1133
- "thumbnail": "[![ME%28R%29 on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
2100
+ "thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png 'ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
1134
2101
  },
1135
2102
  {
1136
2103
  "id": "VFB_00030810",
@@ -1152,7 +2119,7 @@ vfb.get_instances('FBbt_00003748', return_dataframe=False)
1152
2119
  "source": "",
1153
2120
  "source_id": "",
1154
2121
  "template": "[JFRC2](VFB_00017894)",
1155
- "dataset": "[BrainName neuropils on adult brain JFRC2 %28Jenett, Shinomya%29](JenettShinomya_BrainName)",
2122
+ "dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
1156
2123
  "license": "",
1157
2124
  "thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png 'medulla on adult brain template JFRC2 aligned to JFRC2')](VFB_00017894,VFB_00030624)"
1158
2125
  }
@@ -1210,15 +2177,6 @@ vfb.get_templates(return_dataframe=False)
1210
2177
  }
1211
2178
  },
1212
2179
  "rows": [
1213
- {
1214
- "id": "VFB_00101567",
1215
- "order": 1,
1216
- "name": "[JRC2018U](VFB_00101567)",
1217
- "tags": "Nervous_system|Adult",
1218
- "thumbnail": "[![JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018U')](VFB_00101567)",
1219
- "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
1220
- "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1221
- },
1222
2180
  {
1223
2181
  "id": "VFB_00200000",
1224
2182
  "order": 2,
@@ -1229,12 +2187,30 @@ vfb.get_templates(return_dataframe=False)
1229
2187
  "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1230
2188
  },
1231
2189
  {
1232
- "id": "VFB_00017894",
1233
- "order": 3,
1234
- "name": "[JFRC2](VFB_00017894)",
2190
+ "id": "VFB_00120000",
2191
+ "order": 10,
2192
+ "name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
2193
+ "tags": "Adult|Anatomy",
2194
+ "thumbnail": "[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
2195
+ "dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
2196
+ "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
2197
+ },
2198
+ {
2199
+ "id": "VFB_00110000",
2200
+ "order": 9,
2201
+ "name": "[Adult Head (McKellar2020)](VFB_00110000)",
2202
+ "tags": "Adult|Anatomy",
2203
+ "thumbnail": "[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
2204
+ "dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
2205
+ "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
2206
+ },
2207
+ {
2208
+ "id": "VFB_00101567",
2209
+ "order": 1,
2210
+ "name": "[JRC2018U](VFB_00101567)",
1235
2211
  "tags": "Nervous_system|Adult",
1236
- "thumbnail": "[![JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'JFRC2')](VFB_00017894)",
1237
- "dataset": "[FlyLight - GMR GAL4 collection %28Jenett2012%29](Jenett2012)",
2212
+ "thumbnail": "[![JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018U')](VFB_00101567)",
2213
+ "dataset": "[JRC 2018 templates & ROIs](JRC2018)",
1238
2214
  "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1239
2215
  },
1240
2216
  {
@@ -1247,12 +2223,12 @@ vfb.get_templates(return_dataframe=False)
1247
2223
  "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
1248
2224
  },
1249
2225
  {
1250
- "id": "VFB_00050000",
1251
- "order": 5,
1252
- "name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
1253
- "tags": "Nervous_system|Larva",
1254
- "thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1255
- "dataset": "[Neurons involved in larval fast escape response - EM %28Ohyama2016%29](Ohyama2015)",
2226
+ "id": "VFB_00100000",
2227
+ "order": 7,
2228
+ "name": "[COURT2018VNS](VFB_00100000)",
2229
+ "tags": "Nervous_system|Adult|Ganglion",
2230
+ "thumbnail": "[![COURT2018VNS](http://www.virtualflybrain.org/data/VFB/i/0010/0000/VFB_00100000/thumbnail.png 'COURT2018VNS')](VFB_00100000)",
2231
+ "dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
1256
2232
  "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1257
2233
  },
1258
2234
  {
@@ -1261,8 +2237,8 @@ vfb.get_templates(return_dataframe=False)
1261
2237
  "name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
1262
2238
  "tags": "Nervous_system|Larva",
1263
2239
  "thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
1264
- "dataset": "[larval hugin neurons - EM %28Schlegel2016%29](Schlegel2016)",
1265
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
2240
+ "dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016), [Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
2241
+ "license": "[CC_BY](VFBlicense_CC_BY_4_0), [CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1266
2242
  },
1267
2243
  {
1268
2244
  "id": "VFB_00049000",
@@ -1270,16 +2246,7 @@ vfb.get_templates(return_dataframe=False)
1270
2246
  "name": "[L3 CNS template - Wood2018](VFB_00049000)",
1271
2247
  "tags": "Nervous_system|Larva",
1272
2248
  "thumbnail": "[![L3 CNS template - Wood2018](http://www.virtualflybrain.org/data/VFB/i/0004/9000/VFB_00049000/thumbnail.png 'L3 CNS template - Wood2018')](VFB_00049000)",
1273
- "dataset": "[L3 Larval CNS Template %28Truman2016%29](Truman2016)",
1274
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1275
- },
1276
- {
1277
- "id": "VFB_00100000",
1278
- "order": 7,
1279
- "name": "[COURT2018VNS](VFB_00100000)",
1280
- "tags": "Nervous_system|Adult|Ganglion",
1281
- "thumbnail": "[![COURT2018VNS](http://www.virtualflybrain.org/data/VFB/i/0010/0000/VFB_00100000/thumbnail.png 'COURT2018VNS')](VFB_00100000)",
1282
- "dataset": "[Adult VNS neuropils %28Court2017%29](Court2017)",
2249
+ "dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
1283
2250
  "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1284
2251
  },
1285
2252
  {
@@ -1292,22 +2259,13 @@ vfb.get_templates(return_dataframe=False)
1292
2259
  "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1293
2260
  },
1294
2261
  {
1295
- "id": "VFB_00110000",
1296
- "order": 9,
1297
- "name": "[Adult Head %28McKellar2020%29](VFB_00110000)",
1298
- "tags": "Adult|Anatomy",
1299
- "thumbnail": "[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
1300
- "dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
1301
- "license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
1302
- },
1303
- {
1304
- "id": "VFB_00120000",
1305
- "order": 10,
1306
- "name": "[Adult T1 Leg %28Kuan2020%29](VFB_00120000)",
1307
- "tags": "Adult|Anatomy",
1308
- "thumbnail": "[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
1309
- "dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
1310
- "license": "[CC_BY](VFBlicense_CC_BY_4_0)"
2262
+ "id": "VFB_00017894",
2263
+ "order": 3,
2264
+ "name": "[JFRC2](VFB_00017894)",
2265
+ "tags": "Nervous_system|Adult",
2266
+ "thumbnail": "[![JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'JFRC2')](VFB_00017894)",
2267
+ "dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
2268
+ "license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
1311
2269
  }
1312
2270
  ],
1313
2271
  "count": 10