vfbquery 0.3.2__tar.gz → 0.3.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. {vfbquery-0.3.2 → vfbquery-0.3.4}/PKG-INFO +54 -62
  2. {vfbquery-0.3.2 → vfbquery-0.3.4}/README.md +53 -61
  3. vfbquery-0.3.4/pyproject.toml +6 -0
  4. {vfbquery-0.3.2 → vfbquery-0.3.4}/setup.py +1 -1
  5. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/test/term_info_queries_test.py +34 -20
  6. vfbquery-0.3.4/src/vfbquery/__init__.py +4 -0
  7. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery/solr_fetcher.py +13 -2
  8. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery/term_info_queries.py +18 -2
  9. vfbquery-0.3.4/src/vfbquery/test_utils.py +146 -0
  10. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery/vfb_queries.py +96 -23
  11. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery.egg-info/PKG-INFO +54 -62
  12. vfbquery-0.3.2/pyproject.toml +0 -6
  13. vfbquery-0.3.2/src/vfbquery/__init__.py +0 -1
  14. vfbquery-0.3.2/src/vfbquery/test_utils.py +0 -39
  15. {vfbquery-0.3.2 → vfbquery-0.3.4}/LICENSE +0 -0
  16. {vfbquery-0.3.2 → vfbquery-0.3.4}/setup.cfg +0 -0
  17. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/test/__init__.py +0 -0
  18. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/test/readme_parser.py +0 -0
  19. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/test/test_examples_diff.py +0 -0
  20. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery.egg-info/SOURCES.txt +0 -0
  21. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery.egg-info/dependency_links.txt +0 -0
  22. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery.egg-info/requires.txt +0 -0
  23. {vfbquery-0.3.2 → vfbquery-0.3.4}/src/vfbquery.egg-info/top_level.txt +0 -0
{vfbquery-0.3.2 → vfbquery-0.3.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: vfbquery
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- Version: 0.3.2
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+ Version: 0.3.4
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  Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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  Home-page: https://github.com/VirtualFlyBrain/VFBquery
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  Author: VirtualFlyBrain
@@ -53,7 +53,7 @@ vfb.get_term_info('FBbt_00003748')
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  "Meta": {
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  "Name": "[medulla](FBbt_00003748)",
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  "Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
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- "Comment": "",
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+ "Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
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  "Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
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  "Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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  },
@@ -143,19 +143,18 @@ vfb.get_term_info('FBbt_00003748')
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  "count": 4
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  }
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  ],
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- "IsIndividual": False,
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- "Images": {},
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- "IsClass": True,
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+ "IsIndividual": false,
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+ "IsClass": true,
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  "Examples": {
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- "VFB_00030786": [
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+ "VFB_00101384": [
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  {
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- "id": "VFB_00030810",
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- "label": "medulla on adult brain template Ito2014",
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- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
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- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
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- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.nrrd",
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- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.wlz",
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- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume_man.obj"
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+ "id": "VFB_00101385",
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+ "label": "ME(R) on JRC_FlyEM_Hemibrain",
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+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
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+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
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+ "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
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+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
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+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
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  }
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  ],
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  "VFB_00101567": [
@@ -180,22 +179,19 @@ vfb.get_term_info('FBbt_00003748')
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  "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
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  }
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  ],
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- "VFB_00101384": [
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+ "VFB_00030786": [
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  {
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- "id": "VFB_00101385",
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- "label": "ME(R) on JRC_FlyEM_Hemibrain",
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- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
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- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
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- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
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- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
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- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
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+ "id": "VFB_00030810",
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+ "label": "medulla on adult brain template Ito2014",
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+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
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+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
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+ "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
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+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
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+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
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  }
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  ]
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  },
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- "IsTemplate": False,
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- "Domains": {},
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- "Licenses": {},
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- "Publications": [],
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+ "IsTemplate": false,
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  "Synonyms": [
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  {
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  "label": "ME",
@@ -203,12 +199,6 @@ vfb.get_term_info('FBbt_00003748')
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  "type": "",
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  "publication": "[Ito et al., 2014](FBrf0224194)"
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  },
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- {
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- "label": "m",
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- "scope": "has_related_synonym",
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- "type": "",
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- "publication": ""
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- },
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  {
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  "label": "Med",
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  "scope": "has_exact_synonym",
@@ -220,6 +210,12 @@ vfb.get_term_info('FBbt_00003748')
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  "scope": "has_exact_synonym",
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  "type": "",
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  "publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
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+ },
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+ {
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+ "label": "m",
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+ "scope": "has_related_synonym",
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+ "type": "",
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+ "publication": ""
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  }
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  ]
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  }
@@ -259,7 +255,8 @@ vfb.get_term_info('VFB_00000001')
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  "Tags": [
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  "Adult",
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  "Expression_pattern_fragment",
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- "Neuron"
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+ "Neuron",
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+ "lineage_CM3"
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  ],
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  "Queries": [
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  {
@@ -325,41 +322,41 @@ vfb.get_term_info('VFB_00000001')
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  "id": "VFB_00000333",
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  "score": "0.61",
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  "name": "[fru-M-000204](VFB_00000333)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult",
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- "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
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+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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+ "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
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  },
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  {
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  "id": "VFB_00000333",
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  "score": "0.61",
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  "name": "[fru-M-000204](VFB_00000333)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult",
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- "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
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+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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+ "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
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  },
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  {
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  "id": "VFB_00002439",
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  "score": "0.6",
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  "name": "[fru-M-900020](VFB_00002439)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult",
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- "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
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+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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+ "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
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  },
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  {
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  "id": "VFB_00002439",
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  "score": "0.6",
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  "name": "[fru-M-900020](VFB_00002439)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult",
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- "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
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+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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+ "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
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  },
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  {
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- "id": "VFB_00001880",
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+ "id": "VFB_00000845",
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  "score": "0.59",
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- "name": "[fru-M-100041](VFB_00001880)",
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- "tags": "Expression_pattern_fragment|Neuron|Adult",
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- "thumbnail": "[![fru-M-100041 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/1880/VFB_00017894/thumbnail.png 'fru-M-100041 aligned to JFRC2')](VFB_00017894,VFB_00001880)"
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+ "name": "[fru-M-100191](VFB_00000845)",
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+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
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+ "thumbnail": "[![fru-M-100191 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png 'fru-M-100191 aligned to JRC2018U')](VFB_00101567,VFB_00000845)"
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  }
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  ]
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  },
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  "output_format": "table",
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- "count": 46
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+ "count": 60
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  }
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  ],
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  "IsIndividual": True,
@@ -368,11 +365,11 @@ vfb.get_term_info('VFB_00000001')
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  {
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  "id": "VFB_00000001",
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  "label": "fru-M-200266",
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- "thumbnail": "https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png",
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- "thumbnail_transparent": "https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png",
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+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
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+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
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  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
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- "wlz": "https://virtualflybrain.org/reports/VFB_00000001/volume.wlz",
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- "obj": "https://virtualflybrain.org/reports/VFB_00000001/volume.obj",
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+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
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+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
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  "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
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  }
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  ],
@@ -380,19 +377,17 @@ vfb.get_term_info('VFB_00000001')
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  {
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  "id": "VFB_00000001",
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  "label": "fru-M-200266",
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- "thumbnail": "https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png",
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- "thumbnail_transparent": "https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png",
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+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
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+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
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  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
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- "wlz": "https://virtualflybrain.org/reports/VFB_00000001/volume.wlz",
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- "obj": "https://virtualflybrain.org/reports/VFB_00000001/volume.obj",
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+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
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+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
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  "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
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  }
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  ]
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  },
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  "IsClass": False,
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- "Examples": {},
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  "IsTemplate": False,
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- "Domains": {},
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  "Licenses": {
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  "0": {
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  "iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
@@ -402,9 +397,7 @@ vfb.get_term_info('VFB_00000001')
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  "source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
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  "source_iri": "http://virtualflybrain.org/reports/Chiang2010"
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  }
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- },
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- "Publications": [],
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- "Synonyms": []
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+ }
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  }
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  ```
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@@ -412,7 +405,6 @@ Template example:
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  ```python
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  vfb.get_term_info('VFB_00101567')
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  ```
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-
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  ```json
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  {
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  "Name": "JRC2018U",
@@ -441,10 +433,10 @@ vfb.get_term_info('VFB_00101567')
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  "Queries": [],
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  "IsIndividual": True,
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  "Images": {
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- "VFBc_00101567": [
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+ "VFB_00101567": [
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  {
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- "id": "VFBc_00101567",
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- "label": "JRC2018Unisex_c",
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+ "id": "VFB_00101567",
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+ "label": "JRC2018Unisex",
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  "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
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  "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
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  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
{vfbquery-0.3.2 → vfbquery-0.3.4}/README.md RENAMED
@@ -33,7 +33,7 @@ vfb.get_term_info('FBbt_00003748')
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  "Meta": {
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  "Name": "[medulla](FBbt_00003748)",
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  "Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
36
- "Comment": "",
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+ "Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
37
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  "Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
38
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  "Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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  },
@@ -123,19 +123,18 @@ vfb.get_term_info('FBbt_00003748')
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  "count": 4
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  }
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  ],
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- "IsIndividual": False,
127
- "Images": {},
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- "IsClass": True,
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+ "IsIndividual": false,
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+ "IsClass": true,
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  "Examples": {
130
- "VFB_00030786": [
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+ "VFB_00101384": [
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  {
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- "id": "VFB_00030810",
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- "label": "medulla on adult brain template Ito2014",
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- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
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- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
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- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.nrrd",
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- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.wlz",
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- "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume_man.obj"
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+ "id": "VFB_00101385",
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+ "label": "ME(R) on JRC_FlyEM_Hemibrain",
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+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
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+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
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+ "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
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+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
137
+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
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  }
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  ],
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  "VFB_00101567": [
@@ -160,22 +159,19 @@ vfb.get_term_info('FBbt_00003748')
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  "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
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  }
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  ],
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- "VFB_00101384": [
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+ "VFB_00030786": [
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  {
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- "id": "VFB_00101385",
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- "label": "ME(R) on JRC_FlyEM_Hemibrain",
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- "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
168
- "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
169
- "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
170
- "wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
171
- "obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
164
+ "id": "VFB_00030810",
165
+ "label": "medulla on adult brain template Ito2014",
166
+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
167
+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
168
+ "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
169
+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
170
+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
172
171
  }
173
172
  ]
174
173
  },
175
- "IsTemplate": False,
176
- "Domains": {},
177
- "Licenses": {},
178
- "Publications": [],
174
+ "IsTemplate": false,
179
175
  "Synonyms": [
180
176
  {
181
177
  "label": "ME",
@@ -183,12 +179,6 @@ vfb.get_term_info('FBbt_00003748')
183
179
  "type": "",
184
180
  "publication": "[Ito et al., 2014](FBrf0224194)"
185
181
  },
186
- {
187
- "label": "m",
188
- "scope": "has_related_synonym",
189
- "type": "",
190
- "publication": ""
191
- },
192
182
  {
193
183
  "label": "Med",
194
184
  "scope": "has_exact_synonym",
@@ -200,6 +190,12 @@ vfb.get_term_info('FBbt_00003748')
200
190
  "scope": "has_exact_synonym",
201
191
  "type": "",
202
192
  "publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
193
+ },
194
+ {
195
+ "label": "m",
196
+ "scope": "has_related_synonym",
197
+ "type": "",
198
+ "publication": ""
203
199
  }
204
200
  ]
205
201
  }
@@ -239,7 +235,8 @@ vfb.get_term_info('VFB_00000001')
239
235
  "Tags": [
240
236
  "Adult",
241
237
  "Expression_pattern_fragment",
242
- "Neuron"
238
+ "Neuron",
239
+ "lineage_CM3"
243
240
  ],
244
241
  "Queries": [
245
242
  {
@@ -305,41 +302,41 @@ vfb.get_term_info('VFB_00000001')
305
302
  "id": "VFB_00000333",
306
303
  "score": "0.61",
307
304
  "name": "[fru-M-000204](VFB_00000333)",
308
- "tags": "Expression_pattern_fragment|Neuron|Adult",
309
- "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
305
+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
306
+ "thumbnail": "[![fru-M-000204 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png 'fru-M-000204 aligned to JFRC2')](VFB_00017894,VFB_00000333)"
310
307
  },
311
308
  {
312
309
  "id": "VFB_00000333",
313
310
  "score": "0.61",
314
311
  "name": "[fru-M-000204](VFB_00000333)",
315
- "tags": "Expression_pattern_fragment|Neuron|Adult",
316
- "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://virtualflybrain.org/reports/VFB_00000333/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
312
+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
313
+ "thumbnail": "[![fru-M-000204 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png 'fru-M-000204 aligned to JRC2018U')](VFB_00101567,VFB_00000333)"
317
314
  },
318
315
  {
319
316
  "id": "VFB_00002439",
320
317
  "score": "0.6",
321
318
  "name": "[fru-M-900020](VFB_00002439)",
322
- "tags": "Expression_pattern_fragment|Neuron|Adult",
323
- "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
319
+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
320
+ "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
324
321
  },
325
322
  {
326
323
  "id": "VFB_00002439",
327
324
  "score": "0.6",
328
325
  "name": "[fru-M-900020](VFB_00002439)",
329
- "tags": "Expression_pattern_fragment|Neuron|Adult",
330
- "thumbnail": "[![fru-M-900020 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png 'fru-M-900020 aligned to JRC2018U')](VFB_00101567,VFB_00002439)"
326
+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
327
+ "thumbnail": "[![fru-M-900020 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png 'fru-M-900020 aligned to JFRC2')](VFB_00017894,VFB_00002439)"
331
328
  },
332
329
  {
333
- "id": "VFB_00001880",
330
+ "id": "VFB_00000845",
334
331
  "score": "0.59",
335
- "name": "[fru-M-100041](VFB_00001880)",
336
- "tags": "Expression_pattern_fragment|Neuron|Adult",
337
- "thumbnail": "[![fru-M-100041 aligned to JFRC2](http://www.virtualflybrain.org/data/VFB/i/0000/1880/VFB_00017894/thumbnail.png 'fru-M-100041 aligned to JFRC2')](VFB_00017894,VFB_00001880)"
332
+ "name": "[fru-M-100191](VFB_00000845)",
333
+ "tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
334
+ "thumbnail": "[![fru-M-100191 aligned to JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png 'fru-M-100191 aligned to JRC2018U')](VFB_00101567,VFB_00000845)"
338
335
  }
339
336
  ]
340
337
  },
341
338
  "output_format": "table",
342
- "count": 46
339
+ "count": 60
343
340
  }
344
341
  ],
345
342
  "IsIndividual": True,
@@ -348,11 +345,11 @@ vfb.get_term_info('VFB_00000001')
348
345
  {
349
346
  "id": "VFB_00000001",
350
347
  "label": "fru-M-200266",
351
- "thumbnail": "https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png",
352
- "thumbnail_transparent": "https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png",
348
+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
349
+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
353
350
  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
354
- "wlz": "https://virtualflybrain.org/reports/VFB_00000001/volume.wlz",
355
- "obj": "https://virtualflybrain.org/reports/VFB_00000001/volume.obj",
351
+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
352
+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
356
353
  "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
357
354
  }
358
355
  ],
@@ -360,19 +357,17 @@ vfb.get_term_info('VFB_00000001')
360
357
  {
361
358
  "id": "VFB_00000001",
362
359
  "label": "fru-M-200266",
363
- "thumbnail": "https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png",
364
- "thumbnail_transparent": "https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png",
360
+ "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
361
+ "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
365
362
  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
366
- "wlz": "https://virtualflybrain.org/reports/VFB_00000001/volume.wlz",
367
- "obj": "https://virtualflybrain.org/reports/VFB_00000001/volume.obj",
363
+ "wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
364
+ "obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
368
365
  "swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
369
366
  }
370
367
  ]
371
368
  },
372
369
  "IsClass": False,
373
- "Examples": {},
374
370
  "IsTemplate": False,
375
- "Domains": {},
376
371
  "Licenses": {
377
372
  "0": {
378
373
  "iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
@@ -382,9 +377,7 @@ vfb.get_term_info('VFB_00000001')
382
377
  "source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
383
378
  "source_iri": "http://virtualflybrain.org/reports/Chiang2010"
384
379
  }
385
- },
386
- "Publications": [],
387
- "Synonyms": []
380
+ }
388
381
  }
389
382
  ```
390
383
 
@@ -392,7 +385,6 @@ Template example:
392
385
  ```python
393
386
  vfb.get_term_info('VFB_00101567')
394
387
  ```
395
-
396
388
  ```json
397
389
  {
398
390
  "Name": "JRC2018U",
@@ -421,10 +413,10 @@ vfb.get_term_info('VFB_00101567')
421
413
  "Queries": [],
422
414
  "IsIndividual": True,
423
415
  "Images": {
424
- "VFBc_00101567": [
416
+ "VFB_00101567": [
425
417
  {
426
- "id": "VFBc_00101567",
427
- "label": "JRC2018Unisex_c",
418
+ "id": "VFB_00101567",
419
+ "label": "JRC2018Unisex",
428
420
  "thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
429
421
  "thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
430
422
  "nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
vfbquery-0.3.4/pyproject.toml ADDED
@@ -0,0 +1,6 @@
1
+ [build-system]
2
+ requires = [
3
+ "setuptools>=45,<69",
4
+ "wheel"
5
+ ]
6
+ build-backend = "setuptools.build_meta"
{vfbquery-0.3.2 → vfbquery-0.3.4}/setup.py RENAMED
@@ -3,7 +3,7 @@ from os import path
3
3
 
4
4
  here = path.abspath(path.dirname(__file__))
5
5
 
6
- __version__ = '0.3.2'
6
+ __version__ = "0.3.4"
7
7
 
8
8
  # Get the long description from the README file
9
9
  with open(path.join(here, 'README.md')) as f: