vfbquery 0.2.12__tar.gz → 0.3.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- vfbquery-0.3.3/PKG-INFO +1316 -0
- vfbquery-0.3.3/README.md +1296 -0
- vfbquery-0.3.3/pyproject.toml +6 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/setup.py +8 -2
- vfbquery-0.3.3/src/test/readme_parser.py +103 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/test/term_info_queries_test.py +111 -177
- vfbquery-0.3.3/src/test/test_examples_diff.py +317 -0
- vfbquery-0.3.3/src/vfbquery/__init__.py +4 -0
- vfbquery-0.3.3/src/vfbquery/solr_fetcher.py +100 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/vfbquery/term_info_queries.py +63 -3
- vfbquery-0.3.3/src/vfbquery/test_utils.py +39 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/vfbquery/vfb_queries.py +350 -76
- vfbquery-0.3.3/src/vfbquery.egg-info/PKG-INFO +1316 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/vfbquery.egg-info/SOURCES.txt +4 -0
- vfbquery-0.3.3/src/vfbquery.egg-info/requires.txt +4 -0
- vfbquery-0.2.12/PKG-INFO +0 -1169
- vfbquery-0.2.12/README.md +0 -1149
- vfbquery-0.2.12/pyproject.toml +0 -6
- vfbquery-0.2.12/src/vfbquery/__init__.py +0 -1
- vfbquery-0.2.12/src/vfbquery.egg-info/PKG-INFO +0 -1169
- vfbquery-0.2.12/src/vfbquery.egg-info/requires.txt +0 -5
- {vfbquery-0.2.12 → vfbquery-0.3.3}/LICENSE +0 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/setup.cfg +0 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/test/__init__.py +0 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/vfbquery.egg-info/dependency_links.txt +0 -0
- {vfbquery-0.2.12 → vfbquery-0.3.3}/src/vfbquery.egg-info/top_level.txt +0 -0
vfbquery-0.3.3/PKG-INFO
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Metadata-Version: 2.1
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Name: vfbquery
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Version: 0.3.3
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Summary: Wrapper for querying VirtualFlyBrain knowledge graph.
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Home-page: https://github.com/VirtualFlyBrain/VFBquery
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Author: VirtualFlyBrain
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License: GPL-3.0 License
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Project-URL: Bug Reports, https://github.com/VirtualFlyBrain/VFBquery/issues
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Project-URL: Source, https://github.com/VirtualFlyBrain/VFBquery
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Classifier: Programming Language :: Python :: 3
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Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.7
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: pysolr
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Requires-Dist: pandas
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Requires-Dist: marshmallow
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Requires-Dist: vfb_connect
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# VFBquery
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to setup requirements:
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```bash
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pip install --upgrade vfbquery
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```
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To get term info for a term:
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get_term_info(ID)
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e.g.
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```python
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import vfbquery as vfb
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```
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Class example:
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```python
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vfb.get_term_info('FBbt_00003748')
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```
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```json
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{
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"Name": "medulla",
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"Id": "FBbt_00003748",
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"SuperTypes": [
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"Entity",
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"Class",
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"Adult",
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"Anatomy",
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"Nervous_system",
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"Synaptic_neuropil",
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"Synaptic_neuropil_domain",
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"Visual_system"
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],
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"Meta": {
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"Name": "[medulla](FBbt_00003748)",
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"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
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"Comment": "",
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"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
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"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
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},
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"Tags": [
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"Adult",
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"Nervous_system",
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"Synaptic_neuropil_domain",
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"Visual_system"
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],
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"Queries": [
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{
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"query": "ListAllAvailableImages",
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"label": "List all available images of medulla",
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"function": "get_instances",
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"takes": {
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"short_form": {
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"$and": [
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"Class",
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"Anatomy"
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]
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},
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"default": {
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"short_form": "FBbt_00003748"
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}
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},
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"preview": 5,
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"preview_columns": [
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"id",
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"label",
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"tags",
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"thumbnail"
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],
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"preview_results": {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"label": {
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"title": "Name",
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"type": "markdown",
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"order": 0,
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"sort": {
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"0": "Asc"
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}
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},
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"tags": {
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"title": "Gross Types",
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"type": "tags",
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"order": 3
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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}
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},
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"rows": [
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{
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"id": "VFB_00102107",
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"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"thumbnail": "[](VFB_00101567,VFB_00102107)"
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},
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{
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"id": "VFB_00101385",
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"label": "[ME%28R%29 on JRC_FlyEM_Hemibrain](VFB_00101385)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"thumbnail": "[ on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
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},
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{
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"id": "VFB_00030810",
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"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"thumbnail": "[](VFB_00030786,VFB_00030810)"
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},
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{
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"id": "VFB_00030624",
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"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"thumbnail": "[](VFB_00017894,VFB_00030624)"
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}
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]
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},
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"output_format": "table",
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"count": 4
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}
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],
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"IsIndividual": False,
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"IsClass": True,
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"Examples": {
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"VFB_00017894": [
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{
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"id": "VFB_00030624",
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"label": "medulla on adult brain template JFRC2",
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"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
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"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
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"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
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"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
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}
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],
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"VFB_00101384": [
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{
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"id": "VFB_00101385",
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"label": "ME(R) on JRC_FlyEM_Hemibrain",
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"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
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"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
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"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
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"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
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}
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],
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"VFB_00101567": [
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{
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"id": "VFB_00102107",
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"label": "ME on JRC2018Unisex adult brain",
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"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
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"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
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"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
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"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
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}
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],
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"VFB_00030786": [
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{
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"id": "VFB_00030810",
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"label": "medulla on adult brain template Ito2014",
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"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
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"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
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"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
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"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
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}
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]
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},
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"IsTemplate": False,
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"Synonyms": [
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{
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"label": "ME",
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"scope": "has_exact_synonym",
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"type": "",
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"publication": "[Ito et al., 2014](FBrf0224194)"
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},
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{
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"label": "Med",
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"scope": "has_exact_synonym",
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"type": "",
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"publication": "[Chiang et al., 2011](FBrf0212704)"
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},
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{
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"label": "optic medulla",
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"scope": "has_exact_synonym",
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"type": "",
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"publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
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},
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{
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"label": "m",
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"scope": "has_related_synonym",
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"type": "",
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"publication": ""
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}
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]
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}
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```
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Individual example:
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```python
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vfb.get_term_info('VFB_00000001')
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```
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```json
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{
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"Name": "fru-M-200266",
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"Id": "VFB_00000001",
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"SuperTypes": [
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"Entity",
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"Individual",
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"VFB",
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"Neuron",
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"Adult",
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"Anatomy",
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"Cell",
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"Expression_pattern_fragment",
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"Nervous_system",
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"has_image",
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"lineage_CM3",
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"lineage_DM6",
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"FlyCircuit",
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"NBLAST"
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],
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"Meta": {
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"Name": "[fru-M-200266](VFB_00000001)",
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"Description": "",
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"Comment": "OutAge: Adult 5~15 days",
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"Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
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"Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
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},
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"Tags": [
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"Adult",
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"Expression_pattern_fragment",
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"Neuron",
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"lineage_CM3"
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],
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"Queries": [
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{
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"query": "SimilarMorphologyTo",
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"label": "Find similar neurons to fru-M-200266",
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"function": "get_similar_neurons",
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"takes": {
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"short_form": {
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|
268
|
+
"$and": [
|
|
269
|
+
"Individual",
|
|
270
|
+
"Neuron"
|
|
271
|
+
]
|
|
272
|
+
},
|
|
273
|
+
"default": {
|
|
274
|
+
"neuron": "VFB_00000001",
|
|
275
|
+
"similarity_score": "NBLAST_score"
|
|
276
|
+
}
|
|
277
|
+
},
|
|
278
|
+
"preview": 5,
|
|
279
|
+
"preview_columns": [
|
|
280
|
+
"id",
|
|
281
|
+
"score",
|
|
282
|
+
"name",
|
|
283
|
+
"tags",
|
|
284
|
+
"thumbnail"
|
|
285
|
+
],
|
|
286
|
+
"preview_results": {
|
|
287
|
+
"headers": {
|
|
288
|
+
"id": {
|
|
289
|
+
"title": "Add",
|
|
290
|
+
"type": "selection_id",
|
|
291
|
+
"order": -1
|
|
292
|
+
},
|
|
293
|
+
"score": {
|
|
294
|
+
"title": "Score",
|
|
295
|
+
"type": "numeric",
|
|
296
|
+
"order": 1,
|
|
297
|
+
"sort": {
|
|
298
|
+
"0": "Desc"
|
|
299
|
+
}
|
|
300
|
+
},
|
|
301
|
+
"name": {
|
|
302
|
+
"title": "Name",
|
|
303
|
+
"type": "markdown",
|
|
304
|
+
"order": 1,
|
|
305
|
+
"sort": {
|
|
306
|
+
"1": "Asc"
|
|
307
|
+
}
|
|
308
|
+
},
|
|
309
|
+
"tags": {
|
|
310
|
+
"title": "Tags",
|
|
311
|
+
"type": "tags",
|
|
312
|
+
"order": 2
|
|
313
|
+
},
|
|
314
|
+
"thumbnail": {
|
|
315
|
+
"title": "Thumbnail",
|
|
316
|
+
"type": "markdown",
|
|
317
|
+
"order": 9
|
|
318
|
+
}
|
|
319
|
+
},
|
|
320
|
+
"rows": [
|
|
321
|
+
{
|
|
322
|
+
"id": "VFB_00000333",
|
|
323
|
+
"score": "0.61",
|
|
324
|
+
"name": "[fru-M-000204](VFB_00000333)",
|
|
325
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
326
|
+
"thumbnail": "[](VFB_00101567,VFB_00000333)"
|
|
327
|
+
},
|
|
328
|
+
{
|
|
329
|
+
"id": "VFB_00000333",
|
|
330
|
+
"score": "0.61",
|
|
331
|
+
"name": "[fru-M-000204](VFB_00000333)",
|
|
332
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
333
|
+
"thumbnail": "[](VFB_00017894,VFB_00000333)"
|
|
334
|
+
},
|
|
335
|
+
{
|
|
336
|
+
"id": "VFB_00002439",
|
|
337
|
+
"score": "0.6",
|
|
338
|
+
"name": "[fru-M-900020](VFB_00002439)",
|
|
339
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
340
|
+
"thumbnail": "[](VFB_00101567,VFB_00002439)"
|
|
341
|
+
},
|
|
342
|
+
{
|
|
343
|
+
"id": "VFB_00002439",
|
|
344
|
+
"score": "0.6",
|
|
345
|
+
"name": "[fru-M-900020](VFB_00002439)",
|
|
346
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
347
|
+
"thumbnail": "[](VFB_00017894,VFB_00002439)"
|
|
348
|
+
},
|
|
349
|
+
{
|
|
350
|
+
"id": "VFB_00001880",
|
|
351
|
+
"score": "0.59",
|
|
352
|
+
"name": "[fru-M-100041](VFB_00001880)",
|
|
353
|
+
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
|
|
354
|
+
"thumbnail": "[](VFB_00101567,VFB_00001880)"
|
|
355
|
+
}
|
|
356
|
+
]
|
|
357
|
+
},
|
|
358
|
+
"output_format": "table",
|
|
359
|
+
"count": 44
|
|
360
|
+
}
|
|
361
|
+
],
|
|
362
|
+
"IsIndividual": True,
|
|
363
|
+
"Images": {
|
|
364
|
+
"VFB_00101567": [
|
|
365
|
+
{
|
|
366
|
+
"id": "VFB_00000001",
|
|
367
|
+
"label": "fru-M-200266",
|
|
368
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
|
|
369
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
|
|
370
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
|
|
371
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
|
|
372
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
|
|
373
|
+
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
|
|
374
|
+
}
|
|
375
|
+
],
|
|
376
|
+
"VFB_00017894": [
|
|
377
|
+
{
|
|
378
|
+
"id": "VFB_00000001",
|
|
379
|
+
"label": "fru-M-200266",
|
|
380
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
|
|
381
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
|
|
382
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
|
|
383
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
|
|
384
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
|
|
385
|
+
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
|
|
386
|
+
}
|
|
387
|
+
]
|
|
388
|
+
},
|
|
389
|
+
"IsClass": False,
|
|
390
|
+
"IsTemplate": False,
|
|
391
|
+
"Licenses": {
|
|
392
|
+
"0": {
|
|
393
|
+
"iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
|
|
394
|
+
"short_form": "VFBlicense_FlyCircuit_License",
|
|
395
|
+
"label": "FlyCircuit License",
|
|
396
|
+
"icon": "",
|
|
397
|
+
"source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
|
|
398
|
+
"source_iri": "http://virtualflybrain.org/reports/Chiang2010"
|
|
399
|
+
}
|
|
400
|
+
}
|
|
401
|
+
}
|
|
402
|
+
```
|
|
403
|
+
|
|
404
|
+
Template example:
|
|
405
|
+
```python
|
|
406
|
+
vfb.get_term_info('VFB_00101567')
|
|
407
|
+
```
|
|
408
|
+
|
|
409
|
+
```json
|
|
410
|
+
{
|
|
411
|
+
"Name": "JRC2018U",
|
|
412
|
+
"Id": "VFB_00101567",
|
|
413
|
+
"SuperTypes": [
|
|
414
|
+
"Entity",
|
|
415
|
+
"Individual",
|
|
416
|
+
"VFB",
|
|
417
|
+
"Adult",
|
|
418
|
+
"Anatomy",
|
|
419
|
+
"Nervous_system",
|
|
420
|
+
"Template",
|
|
421
|
+
"has_image"
|
|
422
|
+
],
|
|
423
|
+
"Meta": {
|
|
424
|
+
"Name": "[JRC2018Unisex](VFB_00101567)",
|
|
425
|
+
"Symbol": "[JRC2018U](VFB_00101567)",
|
|
426
|
+
"Description": "Janelia 2018 unisex, averaged adult brain template",
|
|
427
|
+
"Comment": "",
|
|
428
|
+
"Types": "[adult brain](FBbt_00003624)"
|
|
429
|
+
},
|
|
430
|
+
"Tags": [
|
|
431
|
+
"Adult",
|
|
432
|
+
"Nervous_system"
|
|
433
|
+
],
|
|
434
|
+
"Queries": [],
|
|
435
|
+
"IsIndividual": True,
|
|
436
|
+
"Images": {
|
|
437
|
+
"VFB_00101567": [
|
|
438
|
+
{
|
|
439
|
+
"id": "VFB_00101567",
|
|
440
|
+
"label": "JRC2018Unisex",
|
|
441
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
|
|
442
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
|
|
443
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
|
|
444
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
|
|
445
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
|
|
446
|
+
"index": 0,
|
|
447
|
+
"center": {
|
|
448
|
+
"X": 605.0,
|
|
449
|
+
"Y": 283.0,
|
|
450
|
+
"Z": 87.0
|
|
451
|
+
},
|
|
452
|
+
"extent": {
|
|
453
|
+
"X": 1211.0,
|
|
454
|
+
"Y": 567.0,
|
|
455
|
+
"Z": 175.0
|
|
456
|
+
},
|
|
457
|
+
"voxel": {
|
|
458
|
+
"X": 0.5189161,
|
|
459
|
+
"Y": 0.5189161,
|
|
460
|
+
"Z": 1.0
|
|
461
|
+
},
|
|
462
|
+
"orientation": "LPS"
|
|
463
|
+
}
|
|
464
|
+
]
|
|
465
|
+
},
|
|
466
|
+
"IsClass": False,
|
|
467
|
+
"Examples": {},
|
|
468
|
+
"IsTemplate": True,
|
|
469
|
+
"Domains": {
|
|
470
|
+
"0": {
|
|
471
|
+
"id": "VFB_00101567",
|
|
472
|
+
"label": "JRC2018U",
|
|
473
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
|
|
474
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
|
|
475
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
|
|
476
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
|
|
477
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
|
|
478
|
+
"index": 0,
|
|
479
|
+
"type_label": "adult brain",
|
|
480
|
+
"type_id": "FBbt_00003624"
|
|
481
|
+
},
|
|
482
|
+
"3": {
|
|
483
|
+
"id": "VFB_00102107",
|
|
484
|
+
"label": "ME on JRC2018Unisex adult brain",
|
|
485
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
|
|
486
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
|
|
487
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
|
|
488
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
|
|
489
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj",
|
|
490
|
+
"index": 3,
|
|
491
|
+
"type_label": "medulla",
|
|
492
|
+
"type_id": "FBbt_00003748"
|
|
493
|
+
},
|
|
494
|
+
"4": {
|
|
495
|
+
"id": "VFB_00102108",
|
|
496
|
+
"label": "AME on JRC2018Unisex adult brain",
|
|
497
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png",
|
|
498
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png",
|
|
499
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.nrrd",
|
|
500
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.wlz",
|
|
501
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume_man.obj",
|
|
502
|
+
"index": 4,
|
|
503
|
+
"type_label": "accessory medulla",
|
|
504
|
+
"type_id": "FBbt_00045003"
|
|
505
|
+
},
|
|
506
|
+
"5": {
|
|
507
|
+
"id": "VFB_00102109",
|
|
508
|
+
"label": "LO on JRC2018Unisex adult brain",
|
|
509
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png",
|
|
510
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png",
|
|
511
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.nrrd",
|
|
512
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.wlz",
|
|
513
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume_man.obj",
|
|
514
|
+
"index": 5,
|
|
515
|
+
"type_label": "lobula",
|
|
516
|
+
"type_id": "FBbt_00003852"
|
|
517
|
+
},
|
|
518
|
+
"6": {
|
|
519
|
+
"id": "VFB_00102110",
|
|
520
|
+
"label": "LOP on JRC2018Unisex adult brain",
|
|
521
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png",
|
|
522
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png",
|
|
523
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.nrrd",
|
|
524
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.wlz",
|
|
525
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume_man.obj",
|
|
526
|
+
"index": 6,
|
|
527
|
+
"type_label": "lobula plate",
|
|
528
|
+
"type_id": "FBbt_00003885"
|
|
529
|
+
},
|
|
530
|
+
"7": {
|
|
531
|
+
"id": "VFB_00102114",
|
|
532
|
+
"label": "CA on JRC2018Unisex adult brain",
|
|
533
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png",
|
|
534
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png",
|
|
535
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.nrrd",
|
|
536
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.wlz",
|
|
537
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume_man.obj",
|
|
538
|
+
"index": 7,
|
|
539
|
+
"type_label": "calyx of adult mushroom body",
|
|
540
|
+
"type_id": "FBbt_00007385"
|
|
541
|
+
},
|
|
542
|
+
"10": {
|
|
543
|
+
"id": "VFB_00102118",
|
|
544
|
+
"label": "PED on JRC2018Unisex adult brain",
|
|
545
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png",
|
|
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553
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556
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557
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562
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565
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566
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567
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568
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569
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574
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577
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578
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579
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580
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581
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585
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586
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588
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589
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591
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592
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593
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594
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597
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598
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599
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601
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602
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603
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604
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605
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609
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610
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611
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612
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613
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615
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616
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617
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618
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619
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621
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622
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623
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624
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625
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626
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627
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628
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629
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630
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633
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634
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635
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636
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637
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638
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639
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640
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641
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646
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647
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648
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649
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650
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651
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652
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658
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662
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664
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665
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667
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669
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670
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673
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674
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675
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676
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678
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679
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681
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682
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683
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685
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686
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687
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688
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689
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690
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691
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693
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694
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695
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696
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697
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698
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699
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700
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701
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702
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703
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705
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706
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707
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709
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710
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|
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711
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712
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713
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714
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715
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717
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718
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719
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721
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722
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|
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723
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724
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725
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727
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728
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729
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730
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731
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733
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734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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745
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746
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747
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748
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749
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750
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751
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|
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|
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766
|
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|
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769
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770
|
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771
|
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772
|
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773
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777
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778
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|
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780
|
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781
|
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|
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|
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784
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789
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790
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793
|
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|
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|
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795
|
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796
|
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797
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798
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802
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804
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805
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806
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807
|
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808
|
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809
|
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810
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814
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816
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817
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818
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819
|
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820
|
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821
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826
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828
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829
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830
|
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|
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831
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832
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833
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834
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836
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837
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838
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840
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841
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842
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843
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844
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845
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849
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850
|
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851
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852
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853
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854
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856
|
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857
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859
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861
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862
|
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864
|
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|
865
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866
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|
|
867
|
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868
|
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869
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870
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871
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873
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874
|
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875
|
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876
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|
877
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878
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|
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879
|
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880
|
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881
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882
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883
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|
884
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|
885
|
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886
|
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887
|
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888
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889
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890
|
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|
|
891
|
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|
892
|
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|
893
|
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|
894
|
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895
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896
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|
897
|
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"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/volume_man.obj",
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|
898
|
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899
|
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|
900
|
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|
901
|
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902
|
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|
|
903
|
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|
904
|
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|
|
905
|
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|
906
|
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|
907
|
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908
|
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|
909
|
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|
910
|
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911
|
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912
|
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|
913
|
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914
|
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|
|
915
|
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|
|
916
|
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|
|
917
|
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|
918
|
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|
919
|
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|
920
|
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|
921
|
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|
922
|
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|
923
|
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|
|
924
|
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|
|
925
|
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|
|
926
|
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|
|
927
|
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|
|
928
|
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|
|
929
|
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|
930
|
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|
931
|
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|
932
|
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|
933
|
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|
934
|
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|
935
|
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|
936
|
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|
937
|
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938
|
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|
|
939
|
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|
940
|
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|
941
|
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|
942
|
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|
943
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|
945
|
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|
946
|
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|
947
|
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|
948
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949
|
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950
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|
|
951
|
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|
952
|
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|
953
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|
954
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955
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|
956
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|
957
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|
958
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|
959
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|
960
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|
961
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962
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963
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|
+
"label": "FLA on JRC2018Unisex adult brain",
|
|
965
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png",
|
|
966
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png",
|
|
967
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.nrrd",
|
|
968
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.wlz",
|
|
969
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume_man.obj",
|
|
970
|
+
"index": 47,
|
|
971
|
+
"type_label": "flange",
|
|
972
|
+
"type_id": "FBbt_00045050"
|
|
973
|
+
},
|
|
974
|
+
"48": {
|
|
975
|
+
"id": "VFB_00102275",
|
|
976
|
+
"label": "CAN on JRC2018Unisex adult brain",
|
|
977
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png",
|
|
978
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png",
|
|
979
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.nrrd",
|
|
980
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.wlz",
|
|
981
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume_man.obj",
|
|
982
|
+
"index": 48,
|
|
983
|
+
"type_label": "cantle",
|
|
984
|
+
"type_id": "FBbt_00045051"
|
|
985
|
+
},
|
|
986
|
+
"49": {
|
|
987
|
+
"id": "VFB_00102276",
|
|
988
|
+
"label": "PRW on JRC2018Unisex adult brain",
|
|
989
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png",
|
|
990
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png",
|
|
991
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.nrrd",
|
|
992
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.wlz",
|
|
993
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume_man.obj",
|
|
994
|
+
"index": 49,
|
|
995
|
+
"type_label": "prow",
|
|
996
|
+
"type_id": "FBbt_00040051"
|
|
997
|
+
},
|
|
998
|
+
"50": {
|
|
999
|
+
"id": "VFB_00102280",
|
|
1000
|
+
"label": "GNG on JRC2018Unisex adult brain",
|
|
1001
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png",
|
|
1002
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png",
|
|
1003
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.nrrd",
|
|
1004
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.wlz",
|
|
1005
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume_man.obj",
|
|
1006
|
+
"index": 50,
|
|
1007
|
+
"type_label": "adult gnathal ganglion",
|
|
1008
|
+
"type_id": "FBbt_00014013"
|
|
1009
|
+
},
|
|
1010
|
+
"59": {
|
|
1011
|
+
"id": "VFB_00102281",
|
|
1012
|
+
"label": "GA on JRC2018Unisex adult brain",
|
|
1013
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png",
|
|
1014
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png",
|
|
1015
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.nrrd",
|
|
1016
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.wlz",
|
|
1017
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume_man.obj",
|
|
1018
|
+
"index": 59,
|
|
1019
|
+
"type_label": "gall",
|
|
1020
|
+
"type_id": "FBbt_00040060"
|
|
1021
|
+
},
|
|
1022
|
+
"94": {
|
|
1023
|
+
"id": "VFB_00102282",
|
|
1024
|
+
"label": "NO on JRC2018Unisex adult brain",
|
|
1025
|
+
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png",
|
|
1026
|
+
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png",
|
|
1027
|
+
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.nrrd",
|
|
1028
|
+
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume.wlz",
|
|
1029
|
+
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/volume_man.obj",
|
|
1030
|
+
"index": 94,
|
|
1031
|
+
"type_label": "nodulus",
|
|
1032
|
+
"type_id": "FBbt_00003680"
|
|
1033
|
+
}
|
|
1034
|
+
},
|
|
1035
|
+
"Licenses": {
|
|
1036
|
+
"0": {
|
|
1037
|
+
"iri": "http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0",
|
|
1038
|
+
"short_form": "VFBlicense_CC_BY_NC_SA_4_0",
|
|
1039
|
+
"label": "CC-BY-NC-SA_4.0",
|
|
1040
|
+
"icon": "http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png",
|
|
1041
|
+
"source": "JRC 2018 templates & ROIs",
|
|
1042
|
+
"source_iri": "http://virtualflybrain.org/reports/JRC2018"
|
|
1043
|
+
}
|
|
1044
|
+
},
|
|
1045
|
+
"Publications": [],
|
|
1046
|
+
"Synonyms": []
|
|
1047
|
+
}
|
|
1048
|
+
```
|
|
1049
|
+
|
|
1050
|
+
Queries:
|
|
1051
|
+
```python
|
|
1052
|
+
vfb.get_instances('FBbt_00003748', return_dataframe=False)
|
|
1053
|
+
```
|
|
1054
|
+
```json
|
|
1055
|
+
{
|
|
1056
|
+
"headers": {
|
|
1057
|
+
"id": {
|
|
1058
|
+
"title": "Add",
|
|
1059
|
+
"type": "selection_id",
|
|
1060
|
+
"order": -1
|
|
1061
|
+
},
|
|
1062
|
+
"label": {
|
|
1063
|
+
"title": "Name",
|
|
1064
|
+
"type": "markdown",
|
|
1065
|
+
"order": 0,
|
|
1066
|
+
"sort": {
|
|
1067
|
+
"0": "Asc"
|
|
1068
|
+
}
|
|
1069
|
+
},
|
|
1070
|
+
"parent": {
|
|
1071
|
+
"title": "Parent Type",
|
|
1072
|
+
"type": "markdown",
|
|
1073
|
+
"order": 1
|
|
1074
|
+
},
|
|
1075
|
+
"template": {
|
|
1076
|
+
"title": "Template",
|
|
1077
|
+
"type": "markdown",
|
|
1078
|
+
"order": 4
|
|
1079
|
+
},
|
|
1080
|
+
"tags": {
|
|
1081
|
+
"title": "Gross Types",
|
|
1082
|
+
"type": "tags",
|
|
1083
|
+
"order": 3
|
|
1084
|
+
},
|
|
1085
|
+
"source": {
|
|
1086
|
+
"title": "Data Source",
|
|
1087
|
+
"type": "markdown",
|
|
1088
|
+
"order": 5
|
|
1089
|
+
},
|
|
1090
|
+
"source_id": {
|
|
1091
|
+
"title": "Data Source",
|
|
1092
|
+
"type": "markdown",
|
|
1093
|
+
"order": 6
|
|
1094
|
+
},
|
|
1095
|
+
"dataset": {
|
|
1096
|
+
"title": "Dataset",
|
|
1097
|
+
"type": "markdown",
|
|
1098
|
+
"order": 7
|
|
1099
|
+
},
|
|
1100
|
+
"license": {
|
|
1101
|
+
"title": "License",
|
|
1102
|
+
"type": "markdown",
|
|
1103
|
+
"order": 8
|
|
1104
|
+
},
|
|
1105
|
+
"thumbnail": {
|
|
1106
|
+
"title": "Thumbnail",
|
|
1107
|
+
"type": "markdown",
|
|
1108
|
+
"order": 9
|
|
1109
|
+
}
|
|
1110
|
+
},
|
|
1111
|
+
"rows": [
|
|
1112
|
+
{
|
|
1113
|
+
"id": "VFB_00102107",
|
|
1114
|
+
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
|
|
1115
|
+
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
|
|
1116
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
1117
|
+
"source": "",
|
|
1118
|
+
"source_id": "",
|
|
1119
|
+
"template": "[JRC2018U](VFB_00101567)",
|
|
1120
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
1121
|
+
"license": "",
|
|
1122
|
+
"thumbnail": "[](VFB_00101567,VFB_00102107)"
|
|
1123
|
+
},
|
|
1124
|
+
{
|
|
1125
|
+
"id": "VFB_00101385",
|
|
1126
|
+
"label": "[ME%28R%29 on JRC_FlyEM_Hemibrain](VFB_00101385)",
|
|
1127
|
+
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
|
|
1128
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
1129
|
+
"source": "",
|
|
1130
|
+
"source_id": "",
|
|
1131
|
+
"template": "[JRCFIB2018Fum](VFB_00101384)",
|
|
1132
|
+
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
|
|
1133
|
+
"license": "",
|
|
1134
|
+
"thumbnail": "[ on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
|
|
1135
|
+
},
|
|
1136
|
+
{
|
|
1137
|
+
"id": "VFB_00030810",
|
|
1138
|
+
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
|
|
1139
|
+
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
|
|
1140
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
1141
|
+
"source": "",
|
|
1142
|
+
"source_id": "",
|
|
1143
|
+
"template": "[adult brain template Ito2014](VFB_00030786)",
|
|
1144
|
+
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
|
|
1145
|
+
"license": "",
|
|
1146
|
+
"thumbnail": "[](VFB_00030786,VFB_00030810)"
|
|
1147
|
+
},
|
|
1148
|
+
{
|
|
1149
|
+
"id": "VFB_00030624",
|
|
1150
|
+
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
|
|
1151
|
+
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
|
|
1152
|
+
"parent": "[medulla](FBbt_00003748)",
|
|
1153
|
+
"source": "",
|
|
1154
|
+
"source_id": "",
|
|
1155
|
+
"template": "[JFRC2](VFB_00017894)",
|
|
1156
|
+
"dataset": "[BrainName neuropils on adult brain JFRC2 %28Jenett, Shinomya%29](JenettShinomya_BrainName)",
|
|
1157
|
+
"license": "",
|
|
1158
|
+
"thumbnail": "[](VFB_00017894,VFB_00030624)"
|
|
1159
|
+
}
|
|
1160
|
+
],
|
|
1161
|
+
"count": 4
|
|
1162
|
+
}
|
|
1163
|
+
```
|
|
1164
|
+
|
|
1165
|
+
```python
|
|
1166
|
+
vfb.get_templates(return_dataframe=False)
|
|
1167
|
+
```
|
|
1168
|
+
```json
|
|
1169
|
+
{
|
|
1170
|
+
"headers": {
|
|
1171
|
+
"id": {
|
|
1172
|
+
"title": "Add",
|
|
1173
|
+
"type": "selection_id",
|
|
1174
|
+
"order": -1
|
|
1175
|
+
},
|
|
1176
|
+
"order": {
|
|
1177
|
+
"title": "Order",
|
|
1178
|
+
"type": "numeric",
|
|
1179
|
+
"order": 1,
|
|
1180
|
+
"sort": {
|
|
1181
|
+
"0": "Asc"
|
|
1182
|
+
}
|
|
1183
|
+
},
|
|
1184
|
+
"name": {
|
|
1185
|
+
"title": "Name",
|
|
1186
|
+
"type": "markdown",
|
|
1187
|
+
"order": 1,
|
|
1188
|
+
"sort": {
|
|
1189
|
+
"1": "Asc"
|
|
1190
|
+
}
|
|
1191
|
+
},
|
|
1192
|
+
"tags": {
|
|
1193
|
+
"title": "Tags",
|
|
1194
|
+
"type": "tags",
|
|
1195
|
+
"order": 2
|
|
1196
|
+
},
|
|
1197
|
+
"thumbnail": {
|
|
1198
|
+
"title": "Thumbnail",
|
|
1199
|
+
"type": "markdown",
|
|
1200
|
+
"order": 9
|
|
1201
|
+
},
|
|
1202
|
+
"dataset": {
|
|
1203
|
+
"title": "Dataset",
|
|
1204
|
+
"type": "metadata",
|
|
1205
|
+
"order": 3
|
|
1206
|
+
},
|
|
1207
|
+
"license": {
|
|
1208
|
+
"title": "License",
|
|
1209
|
+
"type": "metadata",
|
|
1210
|
+
"order": 4
|
|
1211
|
+
}
|
|
1212
|
+
},
|
|
1213
|
+
"rows": [
|
|
1214
|
+
{
|
|
1215
|
+
"id": "VFB_00101567",
|
|
1216
|
+
"order": 1,
|
|
1217
|
+
"name": "[JRC2018U](VFB_00101567)",
|
|
1218
|
+
"tags": "Nervous_system|Adult",
|
|
1219
|
+
"thumbnail": "[](VFB_00101567)",
|
|
1220
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
1221
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
1222
|
+
},
|
|
1223
|
+
{
|
|
1224
|
+
"id": "VFB_00200000",
|
|
1225
|
+
"order": 2,
|
|
1226
|
+
"name": "[JRCVNC2018U](VFB_00200000)",
|
|
1227
|
+
"tags": "Nervous_system|Adult|Ganglion",
|
|
1228
|
+
"thumbnail": "[](VFB_00200000)",
|
|
1229
|
+
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
|
|
1230
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
1231
|
+
},
|
|
1232
|
+
{
|
|
1233
|
+
"id": "VFB_00017894",
|
|
1234
|
+
"order": 3,
|
|
1235
|
+
"name": "[JFRC2](VFB_00017894)",
|
|
1236
|
+
"tags": "Nervous_system|Adult",
|
|
1237
|
+
"thumbnail": "[](VFB_00017894)",
|
|
1238
|
+
"dataset": "[FlyLight - GMR GAL4 collection %28Jenett2012%29](Jenett2012)",
|
|
1239
|
+
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
|
|
1240
|
+
},
|
|
1241
|
+
{
|
|
1242
|
+
"id": "VFB_00101384",
|
|
1243
|
+
"order": 4,
|
|
1244
|
+
"name": "[JRCFIB2018Fum](VFB_00101384)",
|
|
1245
|
+
"tags": "Nervous_system|Adult",
|
|
1246
|
+
"thumbnail": "[](VFB_00101384)",
|
|
1247
|
+
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
|
|
1248
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
|
|
1249
|
+
},
|
|
1250
|
+
{
|
|
1251
|
+
"id": "VFB_00050000",
|
|
1252
|
+
"order": 5,
|
|
1253
|
+
"name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
|
|
1254
|
+
"tags": "Nervous_system|Larva",
|
|
1255
|
+
"thumbnail": "[](VFB_00050000)",
|
|
1256
|
+
"dataset": "[Neurons involved in larval fast escape response - EM %28Ohyama2016%29](Ohyama2015)",
|
|
1257
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
1258
|
+
},
|
|
1259
|
+
{
|
|
1260
|
+
"id": "VFB_00050000",
|
|
1261
|
+
"order": 5,
|
|
1262
|
+
"name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
|
|
1263
|
+
"tags": "Nervous_system|Larva",
|
|
1264
|
+
"thumbnail": "[](VFB_00050000)",
|
|
1265
|
+
"dataset": "[larval hugin neurons - EM %28Schlegel2016%29](Schlegel2016)",
|
|
1266
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
|
|
1267
|
+
},
|
|
1268
|
+
{
|
|
1269
|
+
"id": "VFB_00049000",
|
|
1270
|
+
"order": 6,
|
|
1271
|
+
"name": "[L3 CNS template - Wood2018](VFB_00049000)",
|
|
1272
|
+
"tags": "Nervous_system|Larva",
|
|
1273
|
+
"thumbnail": "[](VFB_00049000)",
|
|
1274
|
+
"dataset": "[L3 Larval CNS Template %28Truman2016%29](Truman2016)",
|
|
1275
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
1276
|
+
},
|
|
1277
|
+
{
|
|
1278
|
+
"id": "VFB_00100000",
|
|
1279
|
+
"order": 7,
|
|
1280
|
+
"name": "[COURT2018VNS](VFB_00100000)",
|
|
1281
|
+
"tags": "Nervous_system|Adult|Ganglion",
|
|
1282
|
+
"thumbnail": "[](VFB_00100000)",
|
|
1283
|
+
"dataset": "[Adult VNS neuropils %28Court2017%29](Court2017)",
|
|
1284
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
1285
|
+
},
|
|
1286
|
+
{
|
|
1287
|
+
"id": "VFB_00030786",
|
|
1288
|
+
"order": 8,
|
|
1289
|
+
"name": "[adult brain template Ito2014](VFB_00030786)",
|
|
1290
|
+
"tags": "Nervous_system|Adult",
|
|
1291
|
+
"thumbnail": "[](VFB_00030786)",
|
|
1292
|
+
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
|
|
1293
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
1294
|
+
},
|
|
1295
|
+
{
|
|
1296
|
+
"id": "VFB_00110000",
|
|
1297
|
+
"order": 9,
|
|
1298
|
+
"name": "[Adult Head %28McKellar2020%29](VFB_00110000)",
|
|
1299
|
+
"tags": "Adult|Anatomy",
|
|
1300
|
+
"thumbnail": "[')](VFB_00110000)",
|
|
1301
|
+
"dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
|
|
1302
|
+
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
|
|
1303
|
+
},
|
|
1304
|
+
{
|
|
1305
|
+
"id": "VFB_00120000",
|
|
1306
|
+
"order": 10,
|
|
1307
|
+
"name": "[Adult T1 Leg %28Kuan2020%29](VFB_00120000)",
|
|
1308
|
+
"tags": "Adult|Anatomy",
|
|
1309
|
+
"thumbnail": "[')](VFB_00120000)",
|
|
1310
|
+
"dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
|
|
1311
|
+
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
|
|
1312
|
+
}
|
|
1313
|
+
],
|
|
1314
|
+
"count": 10
|
|
1315
|
+
}
|
|
1316
|
+
```
|