vestigo 0.1.0__tar.gz

vestigo-0.1.0/LICENSE

@@ -0,0 +1,201 @@
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vestigo-0.1.0/PKG-INFO

@@ -0,0 +1,133 @@
+Metadata-Version: 2.4
+Name: vestigo
+Version: 0.1.0
+Summary: The ledger of the shared computation substrate: versioned artifacts, builds and their leases, references, retention, on SQLite or PostgreSQL.
+Author: Fangchen Li
+Author-email: Fangchen Li <fangchen.li@outlook.com>
+License-Expression: Apache-2.0
+License-File: LICENSE
+Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Dist: azure-storage-blob>=12.20.0 ; extra == 'azure'
+Requires-Dist: azure-identity>=1.25.3 ; extra == 'azure'
+Requires-Dist: google-cloud-storage>=3.0.0 ; extra == 'gcs'
+Requires-Dist: psycopg[binary]>=3.1 ; extra == 'postgres'
+Requires-Dist: psycopg-pool>=3.2 ; extra == 'postgres'
+Requires-Dist: boto3>=1.35.0 ; extra == 's3'
+Requires-Python: >=3.12
+Project-URL: Homepage, https://github.com/bearing-research/vestigo
+Project-URL: Repository, https://github.com/bearing-research/vestigo
+Project-URL: Changelog, https://github.com/bearing-research/vestigo/blob/main/CHANGELOG.md
+Provides-Extra: azure
+Provides-Extra: gcs
+Provides-Extra: postgres
+Provides-Extra: s3
+Description-Content-Type: text/markdown
+
+# vestigo
+
+<!-- --8<-- [start:body] -->
+The ledger of the shared computation substrate, factored out of Strata's
+artifact store (ADR 002): immutable versioned artifacts deduplicated by
+provenance hash, builds with leases and fenced attempts, mutable references
+with compare-and-set and approval, retention and race-safe garbage
+collection, all in one transaction discipline on SQLite or PostgreSQL, with
+blob backends for local disk, S3, GCS and Azure.
+
+Strata is its first consumer. The package imports nothing of Strata: a
+consumer passes blob settings in (`BlobSettings`), registers the validators
+`verify_artifacts` runs per content type (`register_validator`), and records
+what a version holds (`retain`) or requires (`require`, `requires=` on
+`create_artifact`), which garbage collection protects as one closure. A
+structural graph of content-addressed nodes (`graph`) records what produced
+a version (`definition_id`) and is walked with bounded traversals; the
+ledger never parses a node's payload. A build's releases (`releases`) make
+its outputs current together, any number of checkpoints and one final, each
+fenced on the attempt's lease and accepted only once every output's bytes
+are stored, and a build is found again by its computation
+(`find_open_build`) for the attempt that resumes it; the typed operations a release carries (`operations`) move
+references and assign authorities in the same transaction.
+*Vestigo* is Latin for "I track down, I trace": the ledger traces every
+artifact back to the computation and inputs that made it.
+<!-- --8<-- [end:body] -->
+
+## Formal models
+
+`formal/tla/` holds the TLA+ models of the two lifecycles this package
+implements, `ArtifactLifecycle.tla` and `BuildLease.tla`, with the
+configurations that found and then closed their bugs. `formal/README.md`
+says how to run them.
+
+Artifact and name URIs are ``{scheme}://artifact/{id}@v={n}`` and
+``{scheme}://name/{name}``; the scheme is ``vestigo`` unless the consumer calls
+``vestigo.uris.set_uri_scheme`` once at import (Strata uses ``strata``). The
+scheme is persisted in ``input_versions`` rows, so a store keeps the scheme it
+was written under.
+
+## API
+
+The package exports nothing at its top level; a consumer imports each module.
+
+- `vestigo.store`: `ArtifactStore(artifact_dir, blob_store=None, dialect=None,
+  read_only=False)`, the versioned artifacts with their names, aliases, tags,
+  pins, publications, retention (`retain`, `require`, `requires=` on
+  `create_artifact`)
+  and audit log; `register_validator(content_type, validate)`; the
+  `ArtifactVersion` record; `get_artifact_store` and `reset_artifact_store`
+  for the process-wide instance.
+- `vestigo.sql_backend`: `SqliteDialect` (the default) and
+  `PostgresDialect(dsn)`, passed as `dialect=` to the stores; `SqlDialect` and
+  `StoreConnection`, the protocols they satisfy.
+- `vestigo.blob_store`: `BlobSettings`, `LocalBlobStore`, `S3BlobStore`,
+  `GCSBlobStore`, `AzureBlobStore`.
+- `vestigo.build_store`: `BuildStore(db_path, dialect=None)`, the builds with
+  their leases and attempts (`create_build`, `open_attempt`, `renew_lease`,
+  `find_open_build`, `complete_attempt_within`); `BuildState`, `AttemptState`.
+- `vestigo.releases`: `ReleaseStore(artifacts, builds)`, a build's checkpoint
+  and final releases (`prepare`, `attach`, `accept`, `abandon`, `resume`,
+  `latest_accepted`, `reference`, `authority`); `Release`, `ReleaseBundle` and
+  the `ReleaseError` family.
+- `vestigo.operations`: the typed operations a release runs in its transaction
+  (`CheckBuildLease`, `AssertReferenceRevision`, `AssignAuthority`,
+  `AdvanceReference`, `InsertAuditEvent`), with `to_json` and `from_json`.
+- `vestigo.graph`: `GraphStore` (reached as `ArtifactStore.graph`: `put_batch`,
+  `get`, `inputs`, `ancestors`, `dependents`, `topological_order`), `NodeSpec`,
+  `Edge`, `Traversal(max_depth=MAX_DEPTH, max_nodes=MAX_NODES)`, the `CGN1` and
+  `CGD1` encoders (`node_id`, `cgn1_envelope`, `graph_definition_id`,
+  `cgd1_envelope`) and `identity_scope`.
+- `vestigo.provenance`: `TransformSpec(executor, params, inputs)` and its
+  `canonical_json`, `compute_provenance_hash(input_hashes, spec)`,
+  `derive_subkey(parent_hash, *labels)` with `checkpoint_output_key` and
+  `run_output_key`, `parse_transform_spec`.
+- `vestigo.uris`: `set_uri_scheme`, `uri_scheme`, `artifact_uri`,
+  `artifact_uri_prefix`, `name_uri_prefix`, `parse_artifact_uri`,
+  `parse_name_uri`, `LATEST_VERSION`.
+- `vestigo.tables`: `LEDGER_TABLES`, the tables the ledger owns with their
+  copy order, and `TRANSIENT_TABLES`.
+- `vestigo.file_modes`: `private_dir`, `private_file`, `narrow`, the modes the
+  stores create their directories and files with.
+
+## Install
+
+```bash
+uv add vestigo            # or: pip install vestigo; no dependencies beyond the stdlib
+uv add "vestigo[postgres]"  # PostgreSQL metadata; [s3], [gcs], [azure] bring each blob backend's SDK
+```
+
+## Development
+
+```bash
+uv sync --all-extras      # the package, every extra and the dev group
+uv run pytest             # the suite; Postgres and the object-store emulators run in Docker
+uv run pre-commit run --all-files   # ruff, ty, the lockfile check: what CI runs
+uv run pre-commit run --hook-stage manual --all-files   # the above plus pytest
+```
+
+Strata's `tests/contract/` holds the cross-repository compatibility tests:
+hash vectors for the graph encoders, operation schemas, output keys, and the
+ledger's table inventory. A change to any of those is a contract change and
+needs a matching Strata release.

vestigo-0.1.0/README.md

@@ -0,0 +1,103 @@
+# vestigo
+
+<!-- --8<-- [start:body] -->
+The ledger of the shared computation substrate, factored out of Strata's
+artifact store (ADR 002): immutable versioned artifacts deduplicated by
+provenance hash, builds with leases and fenced attempts, mutable references
+with compare-and-set and approval, retention and race-safe garbage
+collection, all in one transaction discipline on SQLite or PostgreSQL, with
+blob backends for local disk, S3, GCS and Azure.
+
+Strata is its first consumer. The package imports nothing of Strata: a
+consumer passes blob settings in (`BlobSettings`), registers the validators
+`verify_artifacts` runs per content type (`register_validator`), and records
+what a version holds (`retain`) or requires (`require`, `requires=` on
+`create_artifact`), which garbage collection protects as one closure. A
+structural graph of content-addressed nodes (`graph`) records what produced
+a version (`definition_id`) and is walked with bounded traversals; the
+ledger never parses a node's payload. A build's releases (`releases`) make
+its outputs current together, any number of checkpoints and one final, each
+fenced on the attempt's lease and accepted only once every output's bytes
+are stored, and a build is found again by its computation
+(`find_open_build`) for the attempt that resumes it; the typed operations a release carries (`operations`) move
+references and assign authorities in the same transaction.
+*Vestigo* is Latin for "I track down, I trace": the ledger traces every
+artifact back to the computation and inputs that made it.
+<!-- --8<-- [end:body] -->
+
+## Formal models
+
+`formal/tla/` holds the TLA+ models of the two lifecycles this package
+implements, `ArtifactLifecycle.tla` and `BuildLease.tla`, with the
+configurations that found and then closed their bugs. `formal/README.md`
+says how to run them.
+
+Artifact and name URIs are ``{scheme}://artifact/{id}@v={n}`` and
+``{scheme}://name/{name}``; the scheme is ``vestigo`` unless the consumer calls
+``vestigo.uris.set_uri_scheme`` once at import (Strata uses ``strata``). The
+scheme is persisted in ``input_versions`` rows, so a store keeps the scheme it
+was written under.
+
+## API
+
+The package exports nothing at its top level; a consumer imports each module.
+
+- `vestigo.store`: `ArtifactStore(artifact_dir, blob_store=None, dialect=None,
+  read_only=False)`, the versioned artifacts with their names, aliases, tags,
+  pins, publications, retention (`retain`, `require`, `requires=` on
+  `create_artifact`)
+  and audit log; `register_validator(content_type, validate)`; the
+  `ArtifactVersion` record; `get_artifact_store` and `reset_artifact_store`
+  for the process-wide instance.
+- `vestigo.sql_backend`: `SqliteDialect` (the default) and
+  `PostgresDialect(dsn)`, passed as `dialect=` to the stores; `SqlDialect` and
+  `StoreConnection`, the protocols they satisfy.
+- `vestigo.blob_store`: `BlobSettings`, `LocalBlobStore`, `S3BlobStore`,
+  `GCSBlobStore`, `AzureBlobStore`.
+- `vestigo.build_store`: `BuildStore(db_path, dialect=None)`, the builds with
+  their leases and attempts (`create_build`, `open_attempt`, `renew_lease`,
+  `find_open_build`, `complete_attempt_within`); `BuildState`, `AttemptState`.
+- `vestigo.releases`: `ReleaseStore(artifacts, builds)`, a build's checkpoint
+  and final releases (`prepare`, `attach`, `accept`, `abandon`, `resume`,
+  `latest_accepted`, `reference`, `authority`); `Release`, `ReleaseBundle` and
+  the `ReleaseError` family.
+- `vestigo.operations`: the typed operations a release runs in its transaction
+  (`CheckBuildLease`, `AssertReferenceRevision`, `AssignAuthority`,
+  `AdvanceReference`, `InsertAuditEvent`), with `to_json` and `from_json`.
+- `vestigo.graph`: `GraphStore` (reached as `ArtifactStore.graph`: `put_batch`,
+  `get`, `inputs`, `ancestors`, `dependents`, `topological_order`), `NodeSpec`,
+  `Edge`, `Traversal(max_depth=MAX_DEPTH, max_nodes=MAX_NODES)`, the `CGN1` and
+  `CGD1` encoders (`node_id`, `cgn1_envelope`, `graph_definition_id`,
+  `cgd1_envelope`) and `identity_scope`.
+- `vestigo.provenance`: `TransformSpec(executor, params, inputs)` and its
+  `canonical_json`, `compute_provenance_hash(input_hashes, spec)`,
+  `derive_subkey(parent_hash, *labels)` with `checkpoint_output_key` and
+  `run_output_key`, `parse_transform_spec`.
+- `vestigo.uris`: `set_uri_scheme`, `uri_scheme`, `artifact_uri`,
+  `artifact_uri_prefix`, `name_uri_prefix`, `parse_artifact_uri`,
+  `parse_name_uri`, `LATEST_VERSION`.
+- `vestigo.tables`: `LEDGER_TABLES`, the tables the ledger owns with their
+  copy order, and `TRANSIENT_TABLES`.
+- `vestigo.file_modes`: `private_dir`, `private_file`, `narrow`, the modes the
+  stores create their directories and files with.
+
+## Install
+
+```bash
+uv add vestigo            # or: pip install vestigo; no dependencies beyond the stdlib
+uv add "vestigo[postgres]"  # PostgreSQL metadata; [s3], [gcs], [azure] bring each blob backend's SDK
+```
+
+## Development
+
+```bash
+uv sync --all-extras      # the package, every extra and the dev group
+uv run pytest             # the suite; Postgres and the object-store emulators run in Docker
+uv run pre-commit run --all-files   # ruff, ty, the lockfile check: what CI runs
+uv run pre-commit run --hook-stage manual --all-files   # the above plus pytest
+```
+
+Strata's `tests/contract/` holds the cross-repository compatibility tests:
+hash vectors for the graph encoders, operation schemas, output keys, and the
+ledger's table inventory. A change to any of those is a contract change and
+needs a matching Strata release.

vestigo-0.1.0/pyproject.toml

@@ -0,0 +1,87 @@
+[project]
+name = "vestigo"
+version = "0.1.0"
+description = "The ledger of the shared computation substrate: versioned artifacts, builds and their leases, references, retention, on SQLite or PostgreSQL."
+readme = "README.md"
+requires-python = ">=3.12"
+license = "Apache-2.0"
+license-files = ["LICENSE"]
+classifiers = [
+    "Development Status :: 2 - Pre-Alpha",
+    "Intended Audience :: Developers",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+]
+dependencies = []
+
+[[project.authors]]
+name = "Fangchen Li"
+email = "fangchen.li@outlook.com"
+
+[project.optional-dependencies]
+postgres = [
+    "psycopg[binary]>=3.1",
+    "psycopg-pool>=3.2",
+]
+s3 = ["boto3>=1.35.0"]
+gcs = ["google-cloud-storage>=3.0.0"]
+azure = [
+    "azure-storage-blob>=12.20.0",
+    "azure-identity>=1.25.3",
+]
+
+[project.urls]
+Homepage = "https://github.com/bearing-research/vestigo"
+Repository = "https://github.com/bearing-research/vestigo"
+Changelog = "https://github.com/bearing-research/vestigo/blob/main/CHANGELOG.md"
+
+[build-system]
+requires = ["uv_build>=0.13.1,<0.14"]
+build-backend = "uv_build"
+
+[dependency-groups]
+dev = [
+    "pytest>=8.0.0",
+    "pytest-asyncio>=0.24.0",
+    "pytest-timeout>=2.3.0",
+    "testcontainers>=4.15.0",
+    "docker>=7.0.0",
+    "anyio>=4.0.0",
+    "cryptography>=42.0.0",
+    "pyarrow>=18.0.0",
+    "moto[s3]>=5.0.0",
+    "ruff==0.17.1",
+    "pre-commit>=4.0.0",
+    "ty>=0.0.24",
+]
+
+[tool.pytest.ini_options]
+asyncio_mode = "auto"
+testpaths = ["tests"]
+timeout = 180
+timeout_method = "thread"
+markers = [
+    """slow: marks tests as slow (deselect with '-m "not slow"')""",
+    "integration: marks tests as integration tests requiring external services",
+]
+
+[tool.ty.environment]
+python-version = "3.12"
+python = ".venv"
+
+[tool.ty.src]
+include = ["src"]
+
+[tool.ruff]
+line-length = 100
+target-version = "py312"
+
+[tool.ruff.lint]
+select = [
+    "E",
+    "F",
+    "I",
+    "UP",
+]

vestigo-0.1.0/pyproject.toml.orig

@@ -0,0 +1,92 @@
+[project]
+name = "vestigo"
+version = "0.1.0"
+description = "The ledger of the shared computation substrate: versioned artifacts, builds and their leases, references, retention, on SQLite or PostgreSQL."
+readme = "README.md"
+requires-python = ">=3.12"
+license = "Apache-2.0"
+license-files = ["LICENSE"]
+authors = [{ name = "Fangchen Li", email = "fangchen.li@outlook.com" }]
+classifiers = [
+    "Development Status :: 2 - Pre-Alpha",
+    "Intended Audience :: Developers",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+]
+# Metadata is stdlib sqlite3, or PostgreSQL via the extra below. Blobs are local
+# files, or an object store through its own SDK, each the extra of its backend.
+dependencies = []
+
+[project.optional-dependencies]
+postgres = [
+    "psycopg[binary]>=3.1",
+    "psycopg-pool>=3.2",
+]
+s3 = [
+    "boto3>=1.35.0",
+]
+gcs = [
+    "google-cloud-storage>=3.0.0",
+]
+azure = [
+    "azure-storage-blob>=12.20.0",
+    "azure-identity>=1.25.3",
+]
+
+[project.urls]
+Homepage = "https://github.com/bearing-research/vestigo"
+Repository = "https://github.com/bearing-research/vestigo"
+Changelog = "https://github.com/bearing-research/vestigo/blob/main/CHANGELOG.md"
+
+[build-system]
+requires = ["uv_build>=0.13.1,<0.14"]
+build-backend = "uv_build"
+
+[dependency-groups]
+dev = [
+    "pytest>=8.0.0",
+    "pytest-asyncio>=0.24.0",
+    "pytest-timeout>=2.3.0",
+    # The Postgres suite starts a container and drives the store off the loop.
+    "testcontainers>=4.15.0",
+    "docker>=7.0.0",
+    "anyio>=4.0.0",
+    # The presigned-signing tests mint an RSA key.
+    "cryptography>=42.0.0",
+    # The suite's payloads are Arrow IPC streams; the package itself never reads them.
+    "pyarrow>=18.0.0",
+    # The S3 backend's unit tests run over moto's in-process S3.
+    "moto[s3]>=5.0.0",
+    # The same ruff as .pre-commit-config.yaml.
+    "ruff==0.17.1",
+    "pre-commit>=4.0.0",
+    "ty>=0.0.24",
+]
+
+[tool.pytest.ini_options]
+asyncio_mode = "auto"
+testpaths = ["tests"]
+timeout = 180
+timeout_method = "thread"
+markers = [
+    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
+    "integration: marks tests as integration tests requiring external services",
+]
+
+[tool.ty.environment]
+python-version = "3.12"
+python = ".venv"
+
+# Type-check only the shipped code, which must stay clean; the tests rely on
+# fakes and fixture injection ty cannot model.
+[tool.ty.src]
+include = ["src"]
+
+[tool.ruff]
+line-length = 100
+target-version = "py312"
+
+[tool.ruff.lint]
+select = ["E", "F", "I", "UP"]

vestigo-0.1.0/src/vestigo/__init__.py

@@ -0,0 +1,14 @@
+"""The ledger of the shared computation substrate (ADR 002); *vestigo*, I trace.
+
+``store`` holds versioned artifacts, names, aliases, tags, pins, publications,
+retention and the audit log; ``build_store`` the builds, their leases and
+attempts; ``releases`` a build's checkpoint and final releases, fenced on its
+attempt's lease, with ``operations`` the typed operations a release runs in its
+transaction; ``graph`` the content-addressed structural nodes, their encoders
+and the bounded traversals; ``sql_backend`` the SQLite and PostgreSQL dialects
+and the one write discipline they share; ``blob_store`` the byte backends;
+``provenance`` the transform spec, its hash and the per-output key derivation;
+``uris`` the artifact and name URI grammar and the process's scheme;
+``file_modes`` the private directory and file modes the stores create with;
+``tables`` the list of tables the ledger owns.
+"""