vectorose 0.2.1__tar.gz

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+ MIT License
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+
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+ Copyright (c) 2023-, Benjamin Z. Rudski, Joseph Deering
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
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+
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+ Metadata-Version: 2.3
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+ Name: vectorose
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+ Version: 0.2.1
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+ Summary: Plot polar and spherical histograms from orientation data.
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+ License: MIT
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+ Author: Benjamin Z. Rudski
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+ Author-email: benjamin.rudski@mail.mcgill.ca
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+ Requires-Python: >=3.10
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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+ Requires-Dist: imageio-ffmpeg (>=0.5.1,<1)
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+ Requires-Dist: imageio[ffmpeg,pyav] (>=2.27.0)
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+ Requires-Dist: importlib-metadata (>=7.0.1)
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+ Requires-Dist: ipywidgets (>=8.1.5,<9)
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+ Requires-Dist: matplotlib (>=3.3.4)
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+ Requires-Dist: numpy (>=1.19.5,<2)
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+ Requires-Dist: openpyxl (>=3.1.2,<4)
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+ Requires-Dist: pandas (>=1.1.3)
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+ Requires-Dist: pyvista[all,jupyter,trame] (>=0.44.1,<1)
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+ Requires-Dist: scipy (>=1.14,<2)
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+ Requires-Dist: trame (>=3.6.5,<4)
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+ Requires-Dist: trimesh[easy] (>=4.3.0,<5)
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+ Project-URL: Documentation, https://vectorose.readthedocs.io/en/latest/index.html
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+ Project-URL: Homepage, https://github.com/bzrudski/vectorose
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+ Project-URL: Repository, https://github.com/bzrudski/vectorose
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+ Description-Content-Type: text/markdown
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+
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+ # VectoRose
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+
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+ ![VectoRose: visualise and analyse 3D directed data](./resources/splash/splash.png)
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+
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+ Spherical and polar histogram plotting for non-unit vectorial and axial
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+ data.
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+
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+ ## Overview
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+
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+ Many fields of science rely on oriented data. In these contexts, scalar
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+ values alone can't describe the quantities under consideration. The values
43
+ of interest are **vectors**, consisting of a *direction* or *orientation*,
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+ in addition to an optional magnitude (length). Examples include wind
45
+ velocities, trabecular bone co-alignment (anisotropy) and cardiac fibre
46
+ orientations.
47
+
48
+ Traditional histograms and statistical tools can't be directly applied to
49
+ analyse these data. To be able to visualise and quantitatively describe and
50
+ analyse oriented datasets in 3D, we present **VectoRose**.
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+
52
+ ### Features
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+
54
+ **VectoRose** provides tools for *visualising* and quantitatively
55
+ *analysing* data sets consisting of vectors and orientations of unit and
56
+ non-unit length.
57
+
58
+ Using VectoRose, it is possible to:
59
+
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+ * Construct spherical histograms of directions and orientations in 3D.
61
+ * Construct 1D scalar histograms of vector magnitudes.
62
+ * Construct nested spherical histograms to understand collections of
63
+ non-unit vectors and axes.
64
+ * Construct 1D polar histograms of vector orientation spherical coordinate
65
+ angles.
66
+ * Compute directional statistics to understand the distributions of
67
+ orientations and directions, as described by Fisher, Lewis and
68
+ Embleton.[^fle]
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+
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+ ![Nested shells representing vectors of non-unit length.](./resources/sample_plots/nested_shells.gif)
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+
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+ ![Rotation animation showing various orientations.](./resources/sample_plots/rotating_orientation.gif)
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+
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+ ## Installation
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+
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+ VectoRose can be installed from PyPI using `pip`.
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+
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+ ```bash
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+ $ pip install vectorose
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+ ```
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+
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+ Alternatively, you can install it from source by cloning this repository.
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+
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+ ## Usage
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+
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+ To use VectoRose, you must have a collection of **3D vectors** stored in a
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+ NumPy array. These may be read from a NumPy file (`*.npy`) or a
88
+ comma-separated values (`*.csv`) file using the functions provided in
89
+ VectoRose.
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+
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+ VectoRose must be imported in order to be used. We recommend using the
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+ alias `vr` when importing VectoRose:
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+
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+ ```python
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+ import vectorose as vr
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+ ```
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+
98
+ ### Histogram Construction
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+
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+ Histogram construction requires two steps:
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+
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+ 1. Assigning all vectors to magnitude and orientation bins.
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+ 2. Computing histograms and generating the histogram plots.
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+
105
+ The first step requires a discrete representation of a sphere, such as a
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+ fine Tregenza sphere, which divides the surface of the sphere into 5806
107
+ faces, most of which are rectangular, of approximately equal surface area.
108
+ Two keyword arguments can be used to set the number of magnitude bins
109
+ (`number_of_shells`) and to fix the histogram domain (`magnitude_range`).
110
+
111
+ In the second step, a variety of histograms can be constructed. These
112
+ histograms may consider the counts (or frequencies) of vectors at each
113
+ combination of magnitude and direction (*bivariate histogram*), or within
114
+ the bins of each variable separately (*marginal histograms*). Histograms
115
+ can also be constructed that consider relative frequencies of one variable
116
+ within a specific range of the other (*conditional histograms*).
117
+
118
+ In this brief code snippet, we will generate some random vectors from a
119
+ von Mises-Fisher unimodal directional distribution, with some noise in the
120
+ magnitude. We'll then construct the bivariate histogram and visualise it in
121
+ 3D using PyVista.
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+
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+ ```python
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+ import vectorose as vr
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+ import vectorose.mock_data
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+
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+ # Create random vectors for demonstration
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+ my_vectors = vr.mock_data.create_vonmises_fisher_vectors_single_direction(
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+ phi=45,
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+ theta=70,
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+ kappa=20,
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+ number_of_points=10000,
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+ magnitude=1.0,
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+ magnitude_std=0.25,
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+ use_degrees=True,
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+ seed=20250317,
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+ )
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+
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+ # Construct the discrete sphere representation
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+ my_sphere = vr.tregenza_sphere.FineTregenzaSphere(number_of_shells=10)
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+ my_binned_vectors, magnitude_bin_edges = my_sphere.assign_histogram_bins(my_vectors)
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+
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+ # Compute the bivariate histogram
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+ my_histogram = my_sphere.construct_histogram(my_binned_vectors, return_fraction=False)
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+
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+ # Generate the histogram meshes
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+ my_histogram_meshes = my_sphere.create_histogram_meshes(my_histogram, magnitude_bin_edges)
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+
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+ # Create a 3D SpherePlotter to view the histogram in 3D and show it
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+ my_sphere_plotter = vr.plotting.SpherePlotter(my_histogram_meshes)
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+ my_sphere_plotter.produce_plot()
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+ my_sphere_plotter.show()
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+ ```
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+
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+ ![Shell animation for VectoRose example](./resources/readme_examples/histogram_construction_shells.gif)
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+
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+ When this code is run in a Jupyter notebook, an interactive plotting output
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+ will appear beneath the code cell. When this code is run in a Python
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+ console, a new interactive window will appear that blocks the main thread.
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+
161
+ In addition to showing the plot in 3D, VectoRose includes various functions
162
+ to produce animations and screenshots of spherical histograms.
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+
164
+ ### Directional Statistics
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+
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+ The functions in the `vectorose.stats` module enable directional statistics
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+ to be computed. These functions have been adapted from the work by Fisher,
168
+ Lewis and Embleton.[^fle]
169
+
170
+ VectoRose implements a variety of descriptive statistics and hypothesis
171
+ tests. Most of these consider pure directions or orientations, which are
172
+ represented as unit vectors.
173
+
174
+ In this code snippet, we generate two sets of mock vectors: a cluster,
175
+ following a von Mises-Fisher distribution, and a girdle, following a Watson
176
+ distribution with a negative parameter value. We then compute Woodcock's
177
+ shape and strength parameters, as described by Woodcock[^woodcock] and as
178
+ explained by Fisher, Lewis and Embleton.[^fle]
179
+
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+ ```python
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+ import vectorose as vr
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+ import vectorose.mock_data
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+ import numpy as np
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+
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+ # Create random vectors for demonstration
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+ my_cluster_vectors = vr.mock_data.create_vonmises_fisher_vectors_single_direction(
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+ phi=45,
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+ theta=70,
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+ kappa=20,
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+ number_of_points=10000,
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+ magnitude=1.0,
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+ magnitude_std=0,
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+ use_degrees=True,
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+ seed=20250318,
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+ )
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+
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+ direction = np.array([1, 0, 0])
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+ my_girdle_vectors = vr.mock_data.generate_watson_distribution(
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+ direction, -20, n=10000, seed=20250318
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+ )
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+
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+ # Compute Woodcock's parameters for both sets of vectors
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+ cluster_orientation_matrix_eigs, _ = vr.stats.compute_orientation_matrix_eigs(
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+ my_cluster_vectors
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+ )
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+ girdle_orientation_matrix_eigs, _ = vr.stats.compute_orientation_matrix_eigs(
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+ my_girdle_vectors
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+ )
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+
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+ cluster_woodcock_parameters = vr.stats.compute_orientation_matrix_parameters(
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+ cluster_orientation_matrix_eigs
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+ )
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+ girdle_woodcock_parameters = vr.stats.compute_orientation_matrix_parameters(
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+ girdle_orientation_matrix_eigs
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+ )
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+
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+ print(f"The VMF distribution has shape parameter {cluster_woodcock_parameters.shape_parameter:.3f}"
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+ f" and strength parameter {cluster_woodcock_parameters.strength_parameter:.3f}.")
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+
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+ print(f"The Watson distribution has shape parameter {girdle_woodcock_parameters.shape_parameter:.3f}"
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+ f" and strength parameter {girdle_woodcock_parameters.strength_parameter:.3f}.")
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+ ```
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+
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+ Running this code produces the following output:
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+ ```
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+ The VMF distribution has shape parameter 48.085 and strength parameter 2.987.
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+ The Watson distribution has shape parameter 0.005 and strength parameter 2.955.
228
+ ```
229
+
230
+ Additional statistical operations are provided in the VectoRose API and are
231
+ described in the **User's Guide**.
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+
233
+ ## Citation
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+
235
+ If you've found VectoRose helpful for your research, please cite our
236
+ publication:
237
+
238
+ ```
239
+ TBA
240
+ ```
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+
242
+ If you've modelled your analysis based on our sample case studies, please
243
+ also cite the following:
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+
245
+ ```
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+ TBA
247
+ ```
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+
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+ ## Contributing
250
+
251
+ Interested in contributing? Check out the contributing guidelines. Please
252
+ note that this project is released with a Code of Conduct. By contributing
253
+ to this project, you agree to abide by its terms.
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+
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+ VectoRose is built on a number of existing, well-supported open-source
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+ packages, including: [NumPy](https://numpy.org/),
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+ [PyVista](https://docs.pyvista.org/),
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+ [Matplotlib](https://matplotlib.org/),
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+ [pandas](https://pandas.pydata.org/),
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+ [SciPy](https://scipy.org/) and [trimesh](https://trimesh.org/).
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+
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+
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+ ## License
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+
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+ VectoRose was created by Benjamin Z. Rudski and Joseph Deering. It is
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+ licensed under the terms of the MIT license. See the `LICENSE` file for
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+ more details.
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+
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+ ## Acknowledgements
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+
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+ The VectoRose project is developed by Benjamin Z. Rudski and Joseph Deering
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+ under the supervision of Dr. Natalie Reznikov at McGill University, in
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+ Montreal, Quebec, Canada &#x1f1e8;&#x1f1e6;.
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+
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+ Works consult in this project are available in our online documentation, as
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+ well as in [`docs/refs.bib`](./docs/refs.bib). For the directional
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+ statistics approaches, we made extensive use of *Statistic analysis of
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+ spherical data* by Fisher, Lewis and Embleton.[^fle]
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+
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+ We also made extensive use of the book [*Python Packages*](https://py-pkgs.org/)
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+ by Tomas Beuzen and Tiffany Timbers to inform the structure and development
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+ of this package.
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+
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+ ## Credits
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+
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+ `vectorose` was created with [`cookiecutter`](https://cookiecutter.readthedocs.io/en/latest/) and the `py-pkgs-cookiecutter` [template](https://github.com/py-pkgs/py-pkgs-cookiecutter).
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+
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+ [^fle]: Fisher, N. I., Lewis, T., & Embleton, B. J. J. (1993).
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+ *Statistical analysis of spherical data* ([New ed.], 1. paperback ed).
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+ Cambridge Univ. Press. <https://www.cambridge.org/ca/universitypress/subjects/physics/astronomy-general/statistical-analysis-spherical-data?format=PB>
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+
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+ [^woodcock]: Woodcock, N. H. (1977). Specification of fabric shapes using
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+ an eigenvalue method. *Geological Society of America Bulletin, 88*(9), 1231.
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+ [https://doi.org/10.1130/0016-7606(1977)88<1231:SOFSUA>2.0.CO;2](https://doi.org/10.1130/0016-7606(1977)88<1231:SOFSUA>2.0.CO;2)
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+
@@ -0,0 +1,263 @@
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+ # VectoRose
2
+
3
+ ![VectoRose: visualise and analyse 3D directed data](./resources/splash/splash.png)
4
+
5
+ Spherical and polar histogram plotting for non-unit vectorial and axial
6
+ data.
7
+
8
+ ## Overview
9
+
10
+ Many fields of science rely on oriented data. In these contexts, scalar
11
+ values alone can't describe the quantities under consideration. The values
12
+ of interest are **vectors**, consisting of a *direction* or *orientation*,
13
+ in addition to an optional magnitude (length). Examples include wind
14
+ velocities, trabecular bone co-alignment (anisotropy) and cardiac fibre
15
+ orientations.
16
+
17
+ Traditional histograms and statistical tools can't be directly applied to
18
+ analyse these data. To be able to visualise and quantitatively describe and
19
+ analyse oriented datasets in 3D, we present **VectoRose**.
20
+
21
+ ### Features
22
+
23
+ **VectoRose** provides tools for *visualising* and quantitatively
24
+ *analysing* data sets consisting of vectors and orientations of unit and
25
+ non-unit length.
26
+
27
+ Using VectoRose, it is possible to:
28
+
29
+ * Construct spherical histograms of directions and orientations in 3D.
30
+ * Construct 1D scalar histograms of vector magnitudes.
31
+ * Construct nested spherical histograms to understand collections of
32
+ non-unit vectors and axes.
33
+ * Construct 1D polar histograms of vector orientation spherical coordinate
34
+ angles.
35
+ * Compute directional statistics to understand the distributions of
36
+ orientations and directions, as described by Fisher, Lewis and
37
+ Embleton.[^fle]
38
+
39
+ ![Nested shells representing vectors of non-unit length.](./resources/sample_plots/nested_shells.gif)
40
+
41
+ ![Rotation animation showing various orientations.](./resources/sample_plots/rotating_orientation.gif)
42
+
43
+ ## Installation
44
+
45
+ VectoRose can be installed from PyPI using `pip`.
46
+
47
+ ```bash
48
+ $ pip install vectorose
49
+ ```
50
+
51
+ Alternatively, you can install it from source by cloning this repository.
52
+
53
+ ## Usage
54
+
55
+ To use VectoRose, you must have a collection of **3D vectors** stored in a
56
+ NumPy array. These may be read from a NumPy file (`*.npy`) or a
57
+ comma-separated values (`*.csv`) file using the functions provided in
58
+ VectoRose.
59
+
60
+ VectoRose must be imported in order to be used. We recommend using the
61
+ alias `vr` when importing VectoRose:
62
+
63
+ ```python
64
+ import vectorose as vr
65
+ ```
66
+
67
+ ### Histogram Construction
68
+
69
+ Histogram construction requires two steps:
70
+
71
+ 1. Assigning all vectors to magnitude and orientation bins.
72
+ 2. Computing histograms and generating the histogram plots.
73
+
74
+ The first step requires a discrete representation of a sphere, such as a
75
+ fine Tregenza sphere, which divides the surface of the sphere into 5806
76
+ faces, most of which are rectangular, of approximately equal surface area.
77
+ Two keyword arguments can be used to set the number of magnitude bins
78
+ (`number_of_shells`) and to fix the histogram domain (`magnitude_range`).
79
+
80
+ In the second step, a variety of histograms can be constructed. These
81
+ histograms may consider the counts (or frequencies) of vectors at each
82
+ combination of magnitude and direction (*bivariate histogram*), or within
83
+ the bins of each variable separately (*marginal histograms*). Histograms
84
+ can also be constructed that consider relative frequencies of one variable
85
+ within a specific range of the other (*conditional histograms*).
86
+
87
+ In this brief code snippet, we will generate some random vectors from a
88
+ von Mises-Fisher unimodal directional distribution, with some noise in the
89
+ magnitude. We'll then construct the bivariate histogram and visualise it in
90
+ 3D using PyVista.
91
+
92
+ ```python
93
+ import vectorose as vr
94
+ import vectorose.mock_data
95
+
96
+ # Create random vectors for demonstration
97
+ my_vectors = vr.mock_data.create_vonmises_fisher_vectors_single_direction(
98
+ phi=45,
99
+ theta=70,
100
+ kappa=20,
101
+ number_of_points=10000,
102
+ magnitude=1.0,
103
+ magnitude_std=0.25,
104
+ use_degrees=True,
105
+ seed=20250317,
106
+ )
107
+
108
+ # Construct the discrete sphere representation
109
+ my_sphere = vr.tregenza_sphere.FineTregenzaSphere(number_of_shells=10)
110
+ my_binned_vectors, magnitude_bin_edges = my_sphere.assign_histogram_bins(my_vectors)
111
+
112
+ # Compute the bivariate histogram
113
+ my_histogram = my_sphere.construct_histogram(my_binned_vectors, return_fraction=False)
114
+
115
+ # Generate the histogram meshes
116
+ my_histogram_meshes = my_sphere.create_histogram_meshes(my_histogram, magnitude_bin_edges)
117
+
118
+ # Create a 3D SpherePlotter to view the histogram in 3D and show it
119
+ my_sphere_plotter = vr.plotting.SpherePlotter(my_histogram_meshes)
120
+ my_sphere_plotter.produce_plot()
121
+ my_sphere_plotter.show()
122
+ ```
123
+
124
+ ![Shell animation for VectoRose example](./resources/readme_examples/histogram_construction_shells.gif)
125
+
126
+ When this code is run in a Jupyter notebook, an interactive plotting output
127
+ will appear beneath the code cell. When this code is run in a Python
128
+ console, a new interactive window will appear that blocks the main thread.
129
+
130
+ In addition to showing the plot in 3D, VectoRose includes various functions
131
+ to produce animations and screenshots of spherical histograms.
132
+
133
+ ### Directional Statistics
134
+
135
+ The functions in the `vectorose.stats` module enable directional statistics
136
+ to be computed. These functions have been adapted from the work by Fisher,
137
+ Lewis and Embleton.[^fle]
138
+
139
+ VectoRose implements a variety of descriptive statistics and hypothesis
140
+ tests. Most of these consider pure directions or orientations, which are
141
+ represented as unit vectors.
142
+
143
+ In this code snippet, we generate two sets of mock vectors: a cluster,
144
+ following a von Mises-Fisher distribution, and a girdle, following a Watson
145
+ distribution with a negative parameter value. We then compute Woodcock's
146
+ shape and strength parameters, as described by Woodcock[^woodcock] and as
147
+ explained by Fisher, Lewis and Embleton.[^fle]
148
+
149
+ ```python
150
+ import vectorose as vr
151
+ import vectorose.mock_data
152
+ import numpy as np
153
+
154
+ # Create random vectors for demonstration
155
+ my_cluster_vectors = vr.mock_data.create_vonmises_fisher_vectors_single_direction(
156
+ phi=45,
157
+ theta=70,
158
+ kappa=20,
159
+ number_of_points=10000,
160
+ magnitude=1.0,
161
+ magnitude_std=0,
162
+ use_degrees=True,
163
+ seed=20250318,
164
+ )
165
+
166
+ direction = np.array([1, 0, 0])
167
+ my_girdle_vectors = vr.mock_data.generate_watson_distribution(
168
+ direction, -20, n=10000, seed=20250318
169
+ )
170
+
171
+ # Compute Woodcock's parameters for both sets of vectors
172
+ cluster_orientation_matrix_eigs, _ = vr.stats.compute_orientation_matrix_eigs(
173
+ my_cluster_vectors
174
+ )
175
+ girdle_orientation_matrix_eigs, _ = vr.stats.compute_orientation_matrix_eigs(
176
+ my_girdle_vectors
177
+ )
178
+
179
+ cluster_woodcock_parameters = vr.stats.compute_orientation_matrix_parameters(
180
+ cluster_orientation_matrix_eigs
181
+ )
182
+ girdle_woodcock_parameters = vr.stats.compute_orientation_matrix_parameters(
183
+ girdle_orientation_matrix_eigs
184
+ )
185
+
186
+ print(f"The VMF distribution has shape parameter {cluster_woodcock_parameters.shape_parameter:.3f}"
187
+ f" and strength parameter {cluster_woodcock_parameters.strength_parameter:.3f}.")
188
+
189
+ print(f"The Watson distribution has shape parameter {girdle_woodcock_parameters.shape_parameter:.3f}"
190
+ f" and strength parameter {girdle_woodcock_parameters.strength_parameter:.3f}.")
191
+ ```
192
+
193
+ Running this code produces the following output:
194
+ ```
195
+ The VMF distribution has shape parameter 48.085 and strength parameter 2.987.
196
+ The Watson distribution has shape parameter 0.005 and strength parameter 2.955.
197
+ ```
198
+
199
+ Additional statistical operations are provided in the VectoRose API and are
200
+ described in the **User's Guide**.
201
+
202
+ ## Citation
203
+
204
+ If you've found VectoRose helpful for your research, please cite our
205
+ publication:
206
+
207
+ ```
208
+ TBA
209
+ ```
210
+
211
+ If you've modelled your analysis based on our sample case studies, please
212
+ also cite the following:
213
+
214
+ ```
215
+ TBA
216
+ ```
217
+
218
+ ## Contributing
219
+
220
+ Interested in contributing? Check out the contributing guidelines. Please
221
+ note that this project is released with a Code of Conduct. By contributing
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+ to this project, you agree to abide by its terms.
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+
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+ VectoRose is built on a number of existing, well-supported open-source
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+ packages, including: [NumPy](https://numpy.org/),
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+ [PyVista](https://docs.pyvista.org/),
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+ [Matplotlib](https://matplotlib.org/),
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+ [pandas](https://pandas.pydata.org/),
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+ [SciPy](https://scipy.org/) and [trimesh](https://trimesh.org/).
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+
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+
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+ ## License
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+
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+ VectoRose was created by Benjamin Z. Rudski and Joseph Deering. It is
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+ licensed under the terms of the MIT license. See the `LICENSE` file for
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+ more details.
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+
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+ ## Acknowledgements
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+
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+ The VectoRose project is developed by Benjamin Z. Rudski and Joseph Deering
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+ under the supervision of Dr. Natalie Reznikov at McGill University, in
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+ Montreal, Quebec, Canada &#x1f1e8;&#x1f1e6;.
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+
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+ Works consult in this project are available in our online documentation, as
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+ well as in [`docs/refs.bib`](./docs/refs.bib). For the directional
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+ statistics approaches, we made extensive use of *Statistic analysis of
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+ spherical data* by Fisher, Lewis and Embleton.[^fle]
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+
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+ We also made extensive use of the book [*Python Packages*](https://py-pkgs.org/)
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+ by Tomas Beuzen and Tiffany Timbers to inform the structure and development
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+ of this package.
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+
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+ ## Credits
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+
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+ `vectorose` was created with [`cookiecutter`](https://cookiecutter.readthedocs.io/en/latest/) and the `py-pkgs-cookiecutter` [template](https://github.com/py-pkgs/py-pkgs-cookiecutter).
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+
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+ [^fle]: Fisher, N. I., Lewis, T., & Embleton, B. J. J. (1993).
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+ *Statistical analysis of spherical data* ([New ed.], 1. paperback ed).
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+ Cambridge Univ. Press. <https://www.cambridge.org/ca/universitypress/subjects/physics/astronomy-general/statistical-analysis-spherical-data?format=PB>
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+
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+ [^woodcock]: Woodcock, N. H. (1977). Specification of fabric shapes using
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+ an eigenvalue method. *Geological Society of America Bulletin, 88*(9), 1231.
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+ [https://doi.org/10.1130/0016-7606(1977)88<1231:SOFSUA>2.0.CO;2](https://doi.org/10.1130/0016-7606(1977)88<1231:SOFSUA>2.0.CO;2)
@@ -0,0 +1,62 @@
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+ [project]
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+ name = "vectorose"
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+ version = "0.2.1"
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+ description = "Plot polar and spherical histograms from orientation data."
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+ authors = [
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+ {name = "Benjamin Z. Rudski", email = "benjamin.rudski@mail.mcgill.ca"},
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+ {name = "Joseph Deering", email = "joseph.deering@mcgill.ca"},
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+ ]
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+ license = "MIT"
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+ readme = "README.md"
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+ requires-python = ">=3.10"
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+ dependencies = [
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+ "numpy (>=1.19.5, <2)",
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+ "matplotlib>=3.3.4",
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+ "pandas>=1.1.3",
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+ "openpyxl (>=3.1.2, <4)",
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+ "trimesh[easy] (>=4.3.0, <5)",
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+ "imageio-ffmpeg (>=0.5.1, <1)",
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+ "scipy (>=1.14, <2)",
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+ "importlib-metadata>=7.0.1",
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+ "pyvista[all, jupyter, trame] (>=0.44.1, <1)",
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+ "imageio[ffmpeg, pyav]>=2.27.0",
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+ "trame (>=3.6.5, <4)",
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+ "ipywidgets (>=8.1.5, <9)",
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+ ]
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+
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+ [project.urls]
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+ homepage = "https://github.com/bzrudski/vectorose"
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+ repository = "https://github.com/bzrudski/vectorose"
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+ documentation = "https://vectorose.readthedocs.io/en/latest/index.html"
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+
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+
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+ [tool.poetry.group.dev.dependencies]
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+ pytest = "^7.4.4"
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+ pytest-cov = "^4.1.0"
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+ jupyter = "^1.0.0"
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+ myst-nb = "^1.0.0"
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+ sphinx-autoapi = "^3.0.0"
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+ python-semantic-release = "^8.7.0"
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+ ipympl = "^0.9.4"
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+ pydata-sphinx-theme = "^0.15.3"
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+ jupyterlab = ">=3"
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+ black = "^24.10.0"
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+ sphinxcontrib-bibtex = "^2.6.3"
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+ jupytext = "^1.16.4"
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+ sphinxcontrib-video = "^0.3.1"
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+ sphinx-design = "^0.6.1"
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+ sphinx-copybutton = "^0.5.2"
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+
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+ [tool.semantic_release]
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+ version_toml = [
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+ "pyproject.toml:project.version"
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+ ]
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+ branch = "main" # branch to make releases of
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+ build_command = "poetry build" # build dists
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+
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+ [tool.semantic_release.publish]
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+ upload_to_vcs_release = true
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+
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+ [build-system]
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+ requires = ["poetry-core>=1.0.0"]
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+ build-backend = "poetry.core.masonry.api"
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+ """VectoRose: A new tool for visualising and analysing directional data."""
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+
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+ from vectorose import polar_data
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+ from vectorose import plotting
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+ from vectorose import io
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+ from vectorose import triangle_sphere
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+ from vectorose import tregenza_sphere
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+ from vectorose import util
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+ from vectorose import stats
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+
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+ from vectorose.sphere_base import SphereBase
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+
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+ from importlib_metadata import version
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+
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+ __version__ = version("vectorose")