varvamp 1.1.2__tar.gz → 1.1.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {varvamp-1.1.2 → varvamp-1.1.3}/PKG-INFO +1 -1
  2. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/__init__.py +1 -1
  3. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/blast.py +1 -1
  4. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/PKG-INFO +1 -1
  5. {varvamp-1.1.2 → varvamp-1.1.3}/README.md +0 -0
  6. {varvamp-1.1.2 → varvamp-1.1.3}/setup.cfg +0 -0
  7. {varvamp-1.1.2 → varvamp-1.1.3}/setup.py +0 -0
  8. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/__main__.py +0 -0
  9. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/command.py +0 -0
  10. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/__init__.py +0 -0
  11. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/alignment.py +0 -0
  12. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/consensus.py +0 -0
  13. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/default_config.py +0 -0
  14. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/get_config.py +0 -0
  15. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/logging.py +0 -0
  16. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/param_estimation.py +0 -0
  17. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/primers.py +0 -0
  18. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/qpcr.py +0 -0
  19. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/regions.py +0 -0
  20. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/reporting.py +0 -0
  21. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/scheme.py +0 -0
  22. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/SOURCES.txt +0 -0
  23. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/dependency_links.txt +0 -0
  24. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/entry_points.txt +0 -0
  25. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/not-zip-safe +0 -0
  26. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/requires.txt +0 -0
  27. {varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/top_level.txt +0 -0
{varvamp-1.1.2 → varvamp-1.1.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: varvamp
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- Version: 1.1.2
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+ Version: 1.1.3
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  Summary: Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses
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  Home-page: https://github.com/jonas-fuchs/varVAMP
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  Author: Dr. Jonas Fuchs
{varvamp-1.1.2 → varvamp-1.1.3}/varvamp/__init__.py RENAMED
@@ -1,3 +1,3 @@
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  """Tool to design amplicons for highly variable virusgenomes"""
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  _program = "varvamp"
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- __version__ = "1.1.2"
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+ __version__ = "1.1.3"
{varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/blast.py RENAMED
@@ -203,7 +203,7 @@ def predict_non_specific_amplicons(amplicons, blast_df, max_length, mode, n_thre
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  if mode == "single_tiled":
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  amplicons[off_target][5] = amplicons[off_target][5] + config.BLAST_PENALTY
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  elif mode == "qpcr":
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- amplicons[off_target]["penalty"][0] = amplicons[off_target]["penalty"][0] + config.BLAST_PENALTY
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+ amplicons[off_target]["penalty"] = amplicons[off_target]["penalty"] + config.BLAST_PENALTY
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  return off_targets, amplicons
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{varvamp-1.1.2 → varvamp-1.1.3}/varvamp.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: varvamp
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- Version: 1.1.2
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+ Version: 1.1.3
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  Summary: Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses
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  Home-page: https://github.com/jonas-fuchs/varVAMP
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  Author: Dr. Jonas Fuchs
{varvamp-1.1.2 → varvamp-1.1.3}/README.md RENAMED
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{varvamp-1.1.2 → varvamp-1.1.3}/setup.cfg RENAMED
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{varvamp-1.1.2 → varvamp-1.1.3}/setup.py RENAMED
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{varvamp-1.1.2 → varvamp-1.1.3}/varvamp/__main__.py RENAMED
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{varvamp-1.1.2 → varvamp-1.1.3}/varvamp/command.py RENAMED
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{varvamp-1.1.2 → varvamp-1.1.3}/varvamp/scripts/qpcr.py RENAMED
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