variantgrid-api 1.7.0__tar.gz → 1.8.0__tar.gz

{variantgrid_api-1.7.0/src/variantgrid_api.egg-info → variantgrid_api-1.8.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: variantgrid_api
-Version: 1.7.0
+Version: 1.8.0
 Summary: A Python API client for VariantGrid
 Author-email: Dave Lawrence <davmlaw@gmail.com>
 License: MIT License

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "variantgrid_api"
-version = "1.7.0"
+version = "1.8.0"
 description = "A Python API client for VariantGrid"
 authors = [
     { name = "Dave Lawrence", email = "davmlaw@gmail.com" }

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0}/src/variantgrid_api/data_models.py

@@ -494,6 +494,7 @@ class UploadFileType(_ServerName):
     BED = "bed"
     DRAGEN_TSO500_ALL_FUSIONS = "dragen_tso500_all_fusions"
     DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT = "dragen_tso500_combined_variant_output"
+    DRAGEN_TSO500_METRICS_OUTPUT = "dragen_tso500_metrics_output"
     GENE_COVERAGE = "gene_coverage"
     GENE_LIST = "gene_list"
     GENE_LEVEL_CNV_VCF = "gene_level_cnv_vcf"

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0}/src/variantgrid_api/mock_variantgrid_api.py

@@ -30,6 +30,7 @@ MOCK_CAPABILITIES = ServerCapabilities(
     upload_file_types=frozenset({UploadFileType.VCF, UploadFileType.GENE_COVERAGE,
                                  UploadFileType.DRAGEN_TSO500_ALL_FUSIONS,
                                  UploadFileType.DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT,
+                                 UploadFileType.DRAGEN_TSO500_METRICS_OUTPUT,
                                  UploadFileType.GENE_LEVEL_CNV_VCF}),
 )
 

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0/src/variantgrid_api.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: variantgrid_api
-Version: 1.7.0
+Version: 1.8.0
 Summary: A Python API client for VariantGrid
 Author-email: Dave Lawrence <davmlaw@gmail.com>
 License: MIT License

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0}/tests/test_api_client_capabilities.py

@@ -60,12 +60,15 @@ def test_capabilities_accept_enums(api, capabilities_url, capabilities_json):
 
     assert all(api.supports(feature) for feature in ServerFeature)
     assert api.accepts_upload(UploadFileType.DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT)
+    assert api.accepts_upload(UploadFileType.DRAGEN_TSO500_METRICS_OUTPUT)
     assert not api.accepts_upload(UploadFileType.GENE_LIST)
 
 
 def test_enums_are_their_server_names():
     assert ServerFeature.PATIENTS == "patients"
     assert str(UploadFileType.DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT) == CVO
+    # SACGF/variantgrid_api#24 - the server's UploadedFileTypes.DRAGEN_TSO500_METRICS_OUTPUT in lower case
+    assert str(UploadFileType.DRAGEN_TSO500_METRICS_OUTPUT) == "dragen_tso500_metrics_output"
     assert f"'{ServerFeature.UPLOAD_METADATA}'" == "'upload_metadata'"
     for enum_class in (ServerFeature, UploadFileType):
         for member in enum_class:

{variantgrid_api-1.7.0 → variantgrid_api-1.8.0}/tests/test_mock_variantgrid_api.py

@@ -245,6 +245,7 @@ def test_mock_default_capabilities_accept_enums(mock_api):
     assert mock_api.supports("upload_status")
     assert mock_api.accepts_upload(UploadFileType.DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT)
     assert not mock_api.accepts_upload(UploadFileType.PED)
+    assert mock_api.accepts_upload(UploadFileType.DRAGEN_TSO500_METRICS_OUTPUT)
     mock_api.upload_file("cvo.tsv", path=None, file_type=UploadFileType.DRAGEN_TSO500_COMBINED_VARIANT_OUTPUT)
     mock_api.assert_called_once("upload_file")