variantgrid-api 0.1__tar.gz → 0.1.2__tar.gz

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Files changed (19) hide show
  1. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/PKG-INFO +1 -1
  2. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/bin/vg_api +2 -2
  3. variantgrid_api-0.1.2/variantgrid_api/__init__.py +3 -0
  4. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/add_classification.py +0 -2
  5. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/api.py +2 -2
  6. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/PKG-INFO +1 -1
  7. variantgrid_api-0.1/variantgrid_api/__init__.py +0 -3
  8. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/setup.cfg +0 -0
  9. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/setup.py +0 -0
  10. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/annotation.py +0 -0
  11. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/classifications.py +0 -0
  12. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/gene_list.py +0 -0
  13. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/variant_classification_vcf.py +0 -0
  14. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api/vcf_utils.py +0 -0
  15. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/SOURCES.txt +0 -0
  16. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/dependency_links.txt +0 -0
  17. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/not-zip-safe +0 -0
  18. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/requires.txt +0 -0
  19. {variantgrid_api-0.1 → variantgrid_api-0.1.2}/variantgrid_api.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 1.0
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  Name: variantgrid_api
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- Version: 0.1
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+ Version: 0.1.2
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  Summary: API to connect to VariantGrid
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  Home-page: https://bitbucket.org/sacgf/variantgrid_api
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  Author: David Lawrence
@@ -32,8 +32,8 @@ def get_args():
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  parser.add('-c', '--config', is_config_file=True, help='config file path')
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  # Global settings
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- parser.add("--host", default='variantgrid.com', env_var='VG_HOST', help='Server Address (default=variantgrid.com)')
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- parser.add("--port", default=80, type=int, env_var='VG_PORT', help='Server port (default=80)')
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+ parser.add("--host", default='https://variantgrid.com', env_var='VG_HOST', help='Server Address (default=https://variantgrid.com)')
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+ parser.add("--port", type=int, env_var='VG_PORT', help='Server port')
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  parser.add("--verbose", default=False, action='store_true', env_var='VG_VERBOSE', help='Print debugging information')
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@@ -0,0 +1,3 @@
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+ from .api import *
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+
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+ __version__ = '0.1.2'
@@ -4,8 +4,6 @@ from variantgrid_api.api import VariantGridAPI
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  def add_classification_handle_args(args):
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- print(args)
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-
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  api = VariantGridAPI.from_args(args)
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  classification = None
@@ -5,7 +5,7 @@ import requests
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  class VariantGridAPI(object):
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- def __init__(self, login=None, password=None, host='variantgrid.com', port=None):
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+ def __init__(self, login=None, password=None, host='https://variantgrid.com', port=None):
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  if login and password:
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  self.auth = (login, password)
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  else:
@@ -23,7 +23,7 @@ class VariantGridAPI(object):
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  @property
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  def url(self):
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- u = "http://%s" % self.host
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+ u = "%s" % self.host
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  if self.port:
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  u += ":%d" % self.port
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  return u
@@ -1,6 +1,6 @@
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  Metadata-Version: 1.0
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  Name: variantgrid-api
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- Version: 0.1
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+ Version: 0.1.2
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  Summary: API to connect to VariantGrid
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  Home-page: https://bitbucket.org/sacgf/variantgrid_api
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  Author: David Lawrence
@@ -1,3 +0,0 @@
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- from .api import *
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-
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- __version__ = 0.1
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