vantage6-algorithm-tools 5.0.0b2__tar.gz → 5.0.0b4__tar.gz

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Files changed (49) hide show
  1. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/PKG-INFO +2 -2
  2. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/pyproject.toml +2 -2
  3. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/client/__init__.py +0 -3
  4. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/client.py +5 -0
  5. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/node.py +1 -1
  6. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/.gitignore +0 -0
  7. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/Makefile +0 -0
  8. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/README.md +0 -0
  9. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/__init__.py +0 -0
  10. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/_test_deserialization.py +0 -0
  11. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/_test_docker_wrapper.py +0 -0
  12. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/_test_preprocessing.py +0 -0
  13. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/_test_serialization.py +0 -0
  14. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/algorithm/__init__.py +0 -0
  15. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/algorithm/test___init__.py +0 -0
  16. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/algorithm_module.py +0 -0
  17. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/base/__init__.py +0 -0
  18. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/__init__.py +0 -0
  19. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_algorithm_client.py +0 -0
  20. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_network.py +0 -0
  21. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_node.py +0 -0
  22. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_server.py +0 -0
  23. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_user_client.py +0 -0
  24. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/tests/mock/test_util.py +0 -0
  25. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/data_extraction/__init__.py +0 -0
  26. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/data_extraction/mock_extract.py +0 -0
  27. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/__init__.py +0 -0
  28. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/action.py +0 -0
  29. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/algorithm_client.py +0 -0
  30. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/data.py +0 -0
  31. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/metadata.py +0 -0
  32. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/decorator/ohdsi.py +0 -0
  33. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/__init__.py +0 -0
  34. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/globals.py +0 -0
  35. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/hq.py +0 -0
  36. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/network.py +0 -0
  37. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/util.py +0 -0
  38. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/__init__.py +0 -0
  39. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/aggregation.py +0 -0
  40. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/algorithm_json_data.py +0 -0
  41. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/column.py +0 -0
  42. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/datetime.py +0 -0
  43. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/encoding.py +0 -0
  44. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/preprocessing/filtering.py +0 -0
  45. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/tools/__init__.py +0 -0
  46. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/tools/error_handling.py +0 -0
  47. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/tools/exceptions.py +0 -0
  48. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/tools/util.py +0 -0
  49. {vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/tools/wrap.py +0 -0
{vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: vantage6-algorithm-tools
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- Version: 5.0.0b2
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+ Version: 5.0.0b4
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  Summary: Vantage6 algorithm tools
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  Author: Vantage6 Team
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  Maintainer-email: Frank Martin <f.martin@iknl.nl>, Bart van Beusekom <b.vanbeusekom@iknl.nl>
@@ -14,7 +14,7 @@ Requires-Dist: pyfiglet==1.0.4
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  Requires-Dist: pyjwt==2.9.0
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  Requires-Dist: sparqlwrapper>=2.0.0
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  Requires-Dist: sqlalchemy>=1.4.46
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- Requires-Dist: vantage6-common==5.0.0b2
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+ Requires-Dist: vantage6-common==5.0.0b4
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  Provides-Extra: dev
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  Requires-Dist: black; extra == 'dev'
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  Requires-Dist: coverage==7.10.2; extra == 'dev'
{vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "vantage6-algorithm-tools"
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- version = "5.0.0b2"
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+ version = "5.0.0b4"
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  description = "Vantage6 algorithm tools"
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  readme = "README.md"
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  license = {text = "MIT"}
@@ -27,7 +27,7 @@ dependencies = [
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  "pyfiglet==1.0.4",
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  "SPARQLWrapper>=2.0.0",
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  "sqlalchemy>=1.4.46",
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- "vantage6-common==5.0.0b2",
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+ "vantage6-common==5.0.0b4",
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  ]
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  [project.optional-dependencies]
{vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/client/__init__.py RENAMED
@@ -172,9 +172,6 @@ class AlgorithmClient(ClientBase):
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  class Run(ClientBase.SubClient):
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  """
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  Algorithm Run client for the algorithm container.
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-
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- This client is used to obtain algorithm runs of tasks with the same
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- job_id from HQ.
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  """
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  def get(self, id_) -> dict:
{vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/client.py RENAMED
@@ -527,6 +527,11 @@ class MockUserClient(MockBaseClient):
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  "setup_collaboration",
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  "User",
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  "Util",
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+ "_try_open_browser_for_device_flow",
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+ "_get_device_flow_endpoints",
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+ "_poll_device_token",
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+ "_start_device_authorization",
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+ "_finalize_successful_authentication",
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  ]
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  )
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{vantage6_algorithm_tools-5.0.0b2 → vantage6_algorithm_tools-5.0.0b4}/vantage6/algorithm/mock/node.py RENAMED
@@ -60,7 +60,7 @@ class MockNode:
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  self.dataframes = {}
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  # In case a pandas dataframe is provided we assume the user directly wants to
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- # use it rather than running an extraction job first.
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+ # use it rather than running an extraction algorithm step first.
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  for dataset in self.datasets:
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  if isinstance(dataset.database, pd.DataFrame):
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  self.dataframes[dataset.label] = dataset.database