validmind 2.4.13__tar.gz → 2.5.2__tar.gz

{validmind-2.4.13 → validmind-2.5.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: validmind
-Version: 2.4.13
+Version: 2.5.2
 Summary: ValidMind Developer Framework
 License: Commercial License
 Author: Andres Rodriguez
@@ -49,7 +49,7 @@ Requires-Dist: scorecardpy (>=0.1.9.6,<0.2.0.0)
 Requires-Dist: seaborn
 Requires-Dist: sentencepiece (>=0.2.0,<0.3.0) ; extra == "all" or extra == "huggingface" or extra == "llm"
 Requires-Dist: sentry-sdk (>=1.24.0,<2.0.0)
-Requires-Dist: shap (>=0.42.0,<0.43.0)
+Requires-Dist: shap (==0.44.1)
 Requires-Dist: statsmodels
 Requires-Dist: tabulate (>=0.8.9,<0.9.0)
 Requires-Dist: textblob (>=0.18.0.post0,<0.19.0)

{validmind-2.4.13 → validmind-2.5.2}/pyproject.toml

@@ -10,7 +10,7 @@ description = "ValidMind Developer Framework"
 license = "Commercial License"
 name = "validmind"
 readme = "README.pypi.md"
-version = "2.4.13"
+version = "2.5.2"
 
 [tool.poetry.dependencies]
 python = ">=3.8.1,<3.12"
@@ -47,7 +47,7 @@ scorecardpy = "^0.1.9.6"
 seaborn = "*"
 sentencepiece = {version = "^0.2.0", optional = true}
 sentry-sdk = "^1.24.0"
-shap = "^0.42.0"
+shap = "0.44.1"
 statsmodels = "*"
 tabulate = "^0.8.9"
 textblob = "^0.18.0.post0"

validmind-2.5.2/validmind/__version__.py

@@ -0,0 +1 @@
+__version__ = "2.5.2"

{validmind-2.4.13 → validmind-2.5.2}/validmind/tests/__types__.py

@@ -113,6 +113,10 @@ TestID = Literal[
     "validmind.model_validation.statsmodels.GINITable",
     "validmind.model_validation.statsmodels.RegressionModelForecastPlot",
     "validmind.model_validation.statsmodels.DurbinWatsonTest",
+    "validmind.ongoing_monitoring.PredictionCorrelation",
+    "validmind.ongoing_monitoring.PredictionAcrossEachFeature",
+    "validmind.ongoing_monitoring.FeatureDrift",
+    "validmind.ongoing_monitoring.TargetPredictionDistributionPlot",
     "validmind.data_validation.MissingValuesRisk",
     "validmind.data_validation.IQROutliersTable",
     "validmind.data_validation.BivariateFeaturesBarPlots",

{validmind-2.4.13 → validmind-2.5.2}/validmind/tests/model_validation/sklearn/ClassifierPerformance.py

@@ -4,7 +4,7 @@
 
 from dataclasses import dataclass
 
-from numpy import unique
+import numpy as np
 from sklearn.metrics import classification_report, roc_auc_score
 from sklearn.preprocessing import LabelBinarizer
 
@@ -71,7 +71,7 @@ class ClassifierPerformance(Metric):
         When building a multi-class summary we need to calculate weighted average,
         macro average and per class metrics.
         """
-        classes = {str(i) for i in unique(self.inputs.dataset.y)}
+        classes = {str(i) for i in np.unique(self.inputs.dataset.y)}
         pr_f1_table = [
             {
                 "Class": class_name,
@@ -126,9 +126,18 @@ class ClassifierPerformance(Metric):
             output_dict=True,
             zero_division=0,
         )
-        report["roc_auc"] = multiclass_roc_auc_score(
-            self.inputs.dataset.y,
-            self.inputs.dataset.y_pred(self.inputs.model),
-        )
+
+        y_true = self.inputs.dataset.y
+
+        if len(np.unique(y_true)) > 2:
+            y_pred = self.inputs.dataset.y_pred(self.inputs.model)
+            y_true = y_true.astype(y_pred.dtype)
+            roc_auc = self.multiclass_roc_auc_score(y_true, y_pred)
+        else:
+            y_prob = self.inputs.dataset.y_prob(self.inputs.model)
+            y_true = y_true.astype(y_prob.dtype).flatten()
+            roc_auc = roc_auc_score(y_true, y_prob)
+
+        report["roc_auc"] = roc_auc
 
         return self.cache_results(report)

{validmind-2.4.13 → validmind-2.5.2}/validmind/tests/model_validation/sklearn/ClusterPerformance.py

@@ -57,7 +57,7 @@ class ClusterPerformance(Metric):
         "model_performance",
     ]
 
-    def cluser_performance_metrics(
+    def cluster_performance_metrics(
         self, y_true_train, y_pred_train, y_true_test, y_pred_test, samples, metric_info
     ):
         y_true_train = y_true_train.astype(y_pred_train.dtype).flatten()
@@ -107,7 +107,7 @@ class ClusterPerformance(Metric):
         y_true_test = y_true_test.astype(class_pred_test.dtype)
 
         samples = ["train", "test"]
-        results = self.cluser_performance_metrics(
+        results = self.cluster_performance_metrics(
             y_true_train,
             class_pred_train,
             y_true_test,

{validmind-2.4.13 → validmind-2.5.2}/validmind/tests/model_validation/sklearn/MinimumROCAUCScore.py

@@ -5,6 +5,7 @@
 from dataclasses import dataclass
 from typing import List
 
+import numpy as np
 import pandas as pd
 from sklearn import metrics, preprocessing
 
@@ -99,9 +100,15 @@ class MinimumROCAUCScore(ThresholdTest):
 
     def run(self):
         y_true = self.inputs.dataset.y
-        class_pred = self.inputs.dataset.y_pred(self.inputs.model)
-        y_true = y_true.astype(class_pred.dtype)
-        roc_auc = self.multiclass_roc_auc_score(y_true, class_pred)
+
+        if len(np.unique(y_true)) > 2:
+            class_pred = self.inputs.dataset.y_pred(self.inputs.model)
+            y_true = y_true.astype(class_pred.dtype)
+            roc_auc = self.multiclass_roc_auc_score(y_true, class_pred)
+        else:
+            y_prob = self.inputs.dataset.y_prob(self.inputs.model)
+            y_true = y_true.astype(y_prob.dtype).flatten()
+            roc_auc = metrics.roc_auc_score(y_true, y_prob)
 
         passed = roc_auc > self.params["min_threshold"]
         results = [

validmind-2.5.2/validmind/tests/model_validation/sklearn/OverfitDiagnosis.py

@@ -0,0 +1,395 @@
+# Copyright © 2023-2024 ValidMind Inc. All rights reserved.
+# See the LICENSE file in the root of this repository for details.
+# SPDX-License-Identifier: AGPL-3.0 AND ValidMind Commercial
+
+from dataclasses import dataclass
+from typing import List
+
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+import seaborn as sns
+from sklearn import metrics
+
+from validmind.logging import get_logger
+from validmind.vm_models import (
+    Figure,
+    ResultSummary,
+    ResultTable,
+    ResultTableMetadata,
+    ThresholdTest,
+    ThresholdTestResult,
+    VMDataset,
+    VMModel,
+)
+
+logger = get_logger(__name__)
+
+DEFAULT_THRESHOLD = 0.04
+PERFORMANCE_METRICS = {
+    "accuracy": {
+        "function": metrics.accuracy_score,
+        "is_classification": True,
+        "is_lower_better": False,
+    },
+    "auc": {
+        "function": metrics.roc_auc_score,
+        "is_classification": True,
+        "is_lower_better": False,
+    },
+    "f1": {
+        "function": metrics.f1_score,
+        "is_classification": True,
+        "is_lower_better": False,
+    },
+    "precision": {
+        "function": metrics.precision_score,
+        "is_classification": True,
+        "is_lower_better": False,
+    },
+    "recall": {
+        "function": metrics.recall_score,
+        "is_classification": True,
+        "is_lower_better": False,
+    },
+    "mse": {
+        "function": metrics.mean_squared_error,
+        "is_classification": False,
+        "is_lower_better": True,
+    },
+    "mae": {
+        "function": metrics.mean_absolute_error,
+        "is_classification": False,
+        "is_lower_better": True,
+    },
+    "r2": {
+        "function": metrics.r2_score,
+        "is_classification": False,
+        "is_lower_better": False,
+    },
+    "mape": {
+        "function": metrics.mean_absolute_percentage_error,
+        "is_classification": False,
+        "is_lower_better": True,
+    },
+}
+
+
+def _prepare_results(
+    results_train: dict, results_test: dict, metric: str
+) -> pd.DataFrame:
+    results_train = pd.DataFrame(results_train)
+    results_test = pd.DataFrame(results_test)
+    results = results_train.copy()
+    results.rename(
+        columns={"shape": "training records", f"{metric}": f"training {metric}"},
+        inplace=True,
+    )
+    results[f"test {metric}"] = results_test[metric]
+
+    # Adjust gap calculation based on metric directionality
+    if PERFORMANCE_METRICS[metric]["is_lower_better"]:
+        results["gap"] = results[f"test {metric}"] - results[f"training {metric}"]
+    else:
+        results["gap"] = results[f"training {metric}"] - results[f"test {metric}"]
+
+    return results
+
+
+def _compute_metrics(
+    results: dict,
+    region: str,
+    df_region: pd.DataFrame,
+    target_column: str,
+    prob_column: str,
+    pred_column: str,
+    feature_column: str,
+    metric: str,
+    is_classification: bool,
+) -> None:
+    results["slice"].append(str(region))
+    results["shape"].append(df_region.shape[0])
+    results["feature"].append(feature_column)
+
+    # Check if any records
+    if df_region.empty:
+        results[metric].append(0)
+        return
+
+    metric_func = PERFORMANCE_METRICS[metric]["function"]
+    y_true = df_region[target_column].values
+
+    # AUC requires probability scores
+    if is_classification and metric == "auc":
+        # if only one class is present in the data, return 0
+        if len(np.unique(y_true)) == 1:
+            results[metric].append(0)
+            return
+
+        score = metric_func(y_true, df_region[prob_column].values)
+
+    # All other classification metrics
+    elif is_classification:
+        score = metric_func(y_true, df_region[pred_column].values)
+
+    # Regression metrics
+    else:
+        score = metric_func(y_true, df_region[pred_column].values)
+
+    results[metric].append(score)
+
+
+def _plot_overfit_regions(
+    df: pd.DataFrame, feature_column: str, threshold: float, metric: str
+) -> plt.Figure:
+    fig, ax = plt.subplots()
+    barplot = sns.barplot(data=df, x="slice", y="gap", ax=ax)
+    ax.tick_params(axis="x", rotation=90)
+
+    # Draw threshold line
+    axhline = ax.axhline(
+        y=threshold,
+        color="red",
+        linestyle="--",
+        linewidth=1,
+        label=f"Cut-Off Threshold: {threshold}",
+    )
+    ax.tick_params(axis="x", labelsize=20)
+    ax.tick_params(axis="y", labelsize=20)
+
+    ax.set_ylabel(f"{metric.upper()} Gap", weight="bold", fontsize=18)
+    ax.set_xlabel("Slice/Segments", weight="bold", fontsize=18)
+    ax.set_title(
+        f"Overfit regions in feature column: {feature_column}",
+        weight="bold",
+        fontsize=20,
+        wrap=True,
+    )
+
+    handles, labels = barplot.get_legend_handles_labels()
+    handles.append(axhline)
+    labels.append(axhline.get_label())
+
+    barplot.legend(
+        handles=handles[:-1],
+        labels=labels,
+        loc="upper center",
+        bbox_to_anchor=(0.5, 0.1),
+        ncol=len(handles),
+    )
+
+    plt.close("all")
+
+    return fig
+
+
+# TODO: make this a functional test instead of class-based when appropriate
+# simply have to remove the class and rename this func to OverfitDiagnosis
+def overfit_diagnosis(  # noqa: C901
+    model: VMModel,
+    datasets: List[VMDataset],
+    metric: str = None,
+    cut_off_threshold: float = DEFAULT_THRESHOLD,
+):
+    """Identify overfit regions in a model's predictions.
+
+    This test compares the model's performance on training versus test data, grouped by
+    feature columns. It calculates the difference between the training and test performance
+    for each group and identifies regions where the difference exceeds a specified threshold.
+
+    This test works for both classification and regression models and with a variety of
+    performance metrics. By default, it uses the AUC metric for classification models and
+    the MSE metric for regression models. The threshold for identifying overfit regions
+    defaults to 0.04 but should be adjusted based on the specific use case.
+
+    ## Inputs
+    - `model` (VMModel): The ValidMind model object to evaluate.
+    - `datasets` (List[VMDataset]): A list of two VMDataset objects where the first dataset
+        is the training data and the second dataset is the test data.
+
+    ## Parameters
+    - `metric` (str, optional): The performance metric to use for evaluation. Choose from:
+        'accuracy', 'auc', 'f1', 'precision', 'recall', 'mse', 'mae', 'r2', 'mape'.
+        Defaults to 'auc' for classification models and 'mse' for regression models.
+    - `cut_off_threshold` (float, optional): The threshold for identifying overfit regions.
+        Defaults to 0.04.
+    """
+
+    # Determine if it's a classification or regression model
+    is_classification = bool(datasets[0].probability_column(model))
+
+    # Set default metric if not provided
+    if metric is None:
+        metric = "auc" if is_classification else "mse"
+        logger.info(
+            f"Using default {'classification' if is_classification else 'regression'} metric: {metric}"
+        )
+
+    if id(cut_off_threshold) == id(DEFAULT_THRESHOLD):
+        logger.info("Using default cut-off threshold of 0.04")
+
+    metric = metric.lower()
+    try:
+        _metric = PERFORMANCE_METRICS[metric.lower()]
+    except KeyError:
+        raise ValueError(
+            f"Invalid metric. Choose from: {', '.join(PERFORMANCE_METRICS.keys())}"
+        )
+
+    if is_classification and not _metric["is_classification"]:
+        raise ValueError(f"Cannot use regression metric ({metric}) for classification.")
+    elif not is_classification and _metric["is_classification"]:
+        raise ValueError(f"Cannot use classification metric ({metric}) for regression.")
+
+    train_df = datasets[0].df
+    test_df = datasets[1].df
+
+    pred_column = f"{datasets[0].target_column}_pred"
+    prob_column = f"{datasets[0].target_column}_prob"
+
+    train_df[pred_column] = datasets[0].y_pred(model)
+    test_df[pred_column] = datasets[1].y_pred(model)
+
+    if is_classification:
+        train_df[prob_column] = datasets[0].y_prob(model)
+        test_df[prob_column] = datasets[1].y_prob(model)
+
+    test_results = []
+    test_figures = []
+    results_headers = ["slice", "shape", "feature", metric]
+
+    for feature_column in datasets[0].feature_columns:
+        bins = 10
+        if feature_column in datasets[0].feature_columns_categorical:
+            bins = len(train_df[feature_column].unique())
+        train_df["bin"] = pd.cut(train_df[feature_column], bins=bins)
+
+        results_train = {k: [] for k in results_headers}
+        results_test = {k: [] for k in results_headers}
+
+        for region, df_region in train_df.groupby("bin"):
+            _compute_metrics(
+                results=results_train,
+                region=region,
+                df_region=df_region,
+                feature_column=feature_column,
+                target_column=datasets[0].target_column,
+                prob_column=prob_column,
+                pred_column=pred_column,
+                metric=metric,
+                is_classification=is_classification,
+            )
+            df_test_region = test_df[
+                (test_df[feature_column] > region.left)
+                & (test_df[feature_column] <= region.right)
+            ]
+            _compute_metrics(
+                results=results_test,
+                region=region,
+                df_region=df_test_region,
+                feature_column=feature_column,
+                target_column=datasets[1].target_column,
+                prob_column=prob_column,
+                pred_column=pred_column,
+                metric=metric,
+                is_classification=is_classification,
+            )
+
+        results = _prepare_results(results_train, results_test, metric)
+
+        fig = _plot_overfit_regions(results, feature_column, cut_off_threshold, metric)
+        test_figures.append(
+            Figure(
+                key=f"overfit_diagnosis:{metric}:{feature_column}",
+                figure=fig,
+                metadata={
+                    "metric": metric,
+                    "cut_off_threshold": cut_off_threshold,
+                    "feature": feature_column,
+                },
+            )
+        )
+
+        for _, row in results[results["gap"] > cut_off_threshold].iterrows():
+            test_results.append(
+                {
+                    "Feature": feature_column,
+                    "Slice": row["slice"],
+                    "Number of Records": row["training records"],
+                    f"Training {metric.upper()}": row[f"training {metric}"],
+                    f"Test {metric.upper()}": row[f"test {metric}"],
+                    "Gap": row["gap"],
+                }
+            )
+
+    return {"Overfit Diagnosis": test_results}, *test_figures
+
+
+@dataclass
+class OverfitDiagnosis(ThresholdTest):
+    """Identify overfit regions in a model's predictions.
+
+    This test compares the model's performance on training versus test data, grouped by
+    feature columns. It calculates the difference between the training and test performance
+    for each group and identifies regions where the difference exceeds a specified threshold.
+
+    This test works for both classification and regression models and with a variety of
+    performance metrics. By default, it uses the AUC metric for classification models and
+    the MSE metric for regression models. The threshold for identifying overfit regions
+    defaults to 0.04 but should be adjusted based on the specific use case.
+
+    ## Inputs
+    - `model` (VMModel): The ValidMind model object to evaluate.
+    - `datasets` (List[VMDataset]): A list of two VMDataset objects where the first dataset
+        is the training data and the second dataset is the test data.
+
+    ## Parameters
+    - `metric` (str, optional): The performance metric to use for evaluation. Choose from:
+        'accuracy', 'auc', 'f1', 'precision', 'recall', 'mse', 'mae', 'r2', 'mape'.
+        Defaults to 'auc' for classification models and 'mse' for regression models.
+    - `cut_off_threshold` (float, optional): The threshold for identifying overfit regions.
+        Defaults to 0.04.
+    """
+
+    required_inputs = ["model", "datasets"]
+    default_params = {"metric": None, "cut_off_threshold": DEFAULT_THRESHOLD}
+    tasks = ["classification", "regression"]
+    tags = [
+        "sklearn",
+        "binary_classification",
+        "multiclass_classification",
+        "linear_regression",
+        "model_diagnosis",
+    ]
+
+    def run(self):
+        func_result = overfit_diagnosis(
+            self.inputs.model,
+            self.inputs.datasets,
+            metric=self.params["metric"],
+            cut_off_threshold=self.params["cut_off_threshold"],
+        )
+
+        return self.cache_results(
+            test_results_list=[
+                ThresholdTestResult(
+                    test_name=self.params["metric"],
+                    column=row["Feature"],
+                    passed=False,
+                    values={k: v for k, v in row.items()},
+                )
+                for row in func_result[0]["Overfit Diagnosis"]
+            ],
+            passed=(not func_result[0]["Overfit Diagnosis"]),
+            figures=func_result[1:],
+        )
+
+    def summary(self, results, _):
+        return ResultSummary(
+            results=[
+                ResultTable(
+                    data=[result.values for result in results],
+                    metadata=ResultTableMetadata(title="Overfit Diagnosis"),
+                )
+            ],
+        )

{validmind-2.4.13 → validmind-2.5.2}/validmind/tests/model_validation/sklearn/PrecisionRecallCurve.py

@@ -65,7 +65,7 @@ class PrecisionRecallCurve(Metric):
             raise SkipTestError("Skipping PrecisionRecallCurve for Foundation models")
 
         y_true = self.inputs.dataset.y
-        y_pred = self.inputs.model.predict_proba(self.inputs.dataset.x)
+        y_pred = self.inputs.dataset.y_prob(self.inputs.model)
 
         # PR curve is only supported for binary classification
         if len(np.unique(y_true)) > 2: