uxarray 2026.3.0__tar.gz → 2026.4.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. {uxarray-2026.3.0 → uxarray-2026.4.1}/PKG-INFO +1 -1
  2. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/dataset.py +20 -2
  3. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/utils.py +84 -21
  4. uxarray-2026.4.1/uxarray/remap/accessor.py +229 -0
  5. uxarray-2026.4.1/uxarray/remap/yac.py +407 -0
  6. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray.egg-info/PKG-INFO +1 -1
  7. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray.egg-info/SOURCES.txt +1 -0
  8. uxarray-2026.3.0/uxarray/remap/accessor.py +0 -112
  9. {uxarray-2026.3.0 → uxarray-2026.4.1}/.codecov.yml +0 -0
  10. {uxarray-2026.3.0 → uxarray-2026.4.1}/.git_archival.txt +0 -0
  11. {uxarray-2026.3.0 → uxarray-2026.4.1}/.gitattributes +0 -0
  12. {uxarray-2026.3.0 → uxarray-2026.4.1}/CITATION.cff +0 -0
  13. {uxarray-2026.3.0 → uxarray-2026.4.1}/CODE_OF_CONDUCT.md +0 -0
  14. {uxarray-2026.3.0 → uxarray-2026.4.1}/CONTRIBUTING.md +0 -0
  15. {uxarray-2026.3.0 → uxarray-2026.4.1}/INSTALLATION.md +0 -0
  16. {uxarray-2026.3.0 → uxarray-2026.4.1}/LICENSE +0 -0
  17. {uxarray-2026.3.0 → uxarray-2026.4.1}/MANIFEST.in +0 -0
  18. {uxarray-2026.3.0 → uxarray-2026.4.1}/README.md +0 -0
  19. {uxarray-2026.3.0 → uxarray-2026.4.1}/build.sh +0 -0
  20. {uxarray-2026.3.0 → uxarray-2026.4.1}/pyproject.toml +0 -0
  21. {uxarray-2026.3.0 → uxarray-2026.4.1}/setup.cfg +0 -0
  22. {uxarray-2026.3.0 → uxarray-2026.4.1}/setup.py +0 -0
  23. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/__init__.py +0 -0
  24. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/constants.py +0 -0
  25. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/conventions/__init__.py +0 -0
  26. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/conventions/descriptors.py +0 -0
  27. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/conventions/ugrid.py +0 -0
  28. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/__init__.py +0 -0
  29. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/accessors.py +0 -0
  30. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/aggregation.py +0 -0
  31. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/api.py +0 -0
  32. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/dataarray.py +0 -0
  33. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/gradient.py +0 -0
  34. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/utils.py +0 -0
  35. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/core/zonal.py +0 -0
  36. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/cross_sections/__init__.py +0 -0
  37. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/cross_sections/dataarray_accessor.py +0 -0
  38. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/cross_sections/grid_accessor.py +0 -0
  39. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/cross_sections/sample.py +0 -0
  40. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/formatting_html.py +0 -0
  41. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/__init__.py +0 -0
  42. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/arcs.py +0 -0
  43. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/area.py +0 -0
  44. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/bounds.py +0 -0
  45. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/connectivity.py +0 -0
  46. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/coordinates.py +0 -0
  47. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/dual.py +0 -0
  48. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/geometry.py +0 -0
  49. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/grid.py +0 -0
  50. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/integrate.py +0 -0
  51. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/intersections.py +0 -0
  52. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/neighbors.py +0 -0
  53. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/point_in_face.py +0 -0
  54. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/slice.py +0 -0
  55. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/utils.py +0 -0
  56. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/grid/validation.py +0 -0
  57. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/__init__.py +0 -0
  58. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_delaunay.py +0 -0
  59. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_esmf.py +0 -0
  60. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_exodus.py +0 -0
  61. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_fesom2.py +0 -0
  62. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_geopandas.py +0 -0
  63. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_geos.py +0 -0
  64. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_healpix.py +0 -0
  65. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_icon.py +0 -0
  66. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_mpas.py +0 -0
  67. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_scrip.py +0 -0
  68. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_structured.py +0 -0
  69. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_topology.py +0 -0
  70. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_ugrid.py +0 -0
  71. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_vertices.py +0 -0
  72. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/io/_voronoi.py +0 -0
  73. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/plot/__init__.py +0 -0
  74. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/plot/accessor.py +0 -0
  75. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/plot/constants.py +0 -0
  76. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/plot/matplotlib.py +0 -0
  77. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/plot/utils.py +0 -0
  78. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/__init__.py +0 -0
  79. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/bilinear.py +0 -0
  80. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/inverse_distance_weighted.py +0 -0
  81. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/nearest_neighbor.py +0 -0
  82. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/spatial_coords_remap.py +0 -0
  83. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/remap/utils.py +0 -0
  84. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/subset/__init__.py +0 -0
  85. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/subset/dataarray_accessor.py +0 -0
  86. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/subset/grid_accessor.py +0 -0
  87. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/utils/__init__.py +0 -0
  88. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray/utils/computing.py +0 -0
  89. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray.egg-info/dependency_links.txt +0 -0
  90. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray.egg-info/requires.txt +0 -0
  91. {uxarray-2026.3.0 → uxarray-2026.4.1}/uxarray.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: uxarray
3
- Version: 2026.3.0
3
+ Version: 2026.4.1
4
4
  Summary: Xarray extension for unstructured climate and global weather data analysis and visualization.
5
5
  License: Apache License
6
6
  Version 2.0, January 2004
@@ -90,6 +90,24 @@ class UxDataset(xr.Dataset):
90
90
  else:
91
91
  self._uxgrid = uxgrid
92
92
 
93
+ # As of xarray's 2026.4.0, `xr.Dataset(xr.Dataset)` is prohibited;
94
+ # hence this check, i.e. if we get `xr.Dataset` as input, use its `data_vars`
95
+ # as `dict` and handle `coords` and `attrs` properly as well
96
+ if args and isinstance(args[0], xr.Dataset):
97
+ ds = args[0]
98
+ # Replacee only args[0], `ds`, with `ds.data_vars` as `dict`
99
+ args = (dict(ds.data_vars),) + args[1:]
100
+ # coords not passed positionally
101
+ if len(args) < 2:
102
+ kwargs.setdefault(
103
+ "coords", dict(ds.coords)
104
+ ) # Set it as kwarg only if not explicitly provided
105
+ # attrs not passed positionally
106
+ if len(args) < 3:
107
+ kwargs.setdefault(
108
+ "attrs", ds.attrs
109
+ ) # Set it as kwarg only if not explicitly provided
110
+
93
111
  super().__init__(*args, **kwargs)
94
112
 
95
113
  # declare plotting accessor
@@ -627,9 +645,9 @@ class UxDataset(xr.Dataset):
627
645
  """
628
646
  if grid_format == "HEALPix":
629
647
  ds = self.rename_dims({"n_face": "cell"})
630
- return xr.Dataset(ds)
648
+ return xr.Dataset(ds.data_vars, coords=ds.coords, attrs=ds.attrs)
631
649
 
632
- return xr.Dataset(self)
650
+ return xr.Dataset(self.data_vars, coords=self.coords, attrs=self.attrs)
633
651
 
634
652
  def get_dual(self):
635
653
  """Compute the dual mesh for a dataset, returns a new dataset object.
@@ -7,51 +7,114 @@ from uxarray.io._mpas import _mpas_to_ugrid_dims
7
7
  from uxarray.io._ugrid import _is_ugrid, _read_ugrid
8
8
 
9
9
 
10
+ def _is_exodus(dataset: xr.Dataset) -> bool:
11
+ """Check whether a dataset looks like an Exodus mesh."""
12
+ has_packed_coords = "coord" in dataset
13
+ has_split_coords = {"coordx", "coordy"}.issubset(dataset.variables)
14
+ has_connectivity = any(
15
+ name.startswith("connect") for name in dataset.variables
16
+ ) or any("num_nod_per_el" in dim for dim in dataset.dims)
17
+
18
+ return has_connectivity and (has_packed_coords or has_split_coords)
19
+
20
+
21
+ def _is_scrip(dataset: xr.Dataset) -> bool:
22
+ """Check whether a dataset looks like an unstructured SCRIP grid."""
23
+ required_vars = {
24
+ "grid_center_lon",
25
+ "grid_center_lat",
26
+ "grid_corner_lon",
27
+ "grid_corner_lat",
28
+ }
29
+ unstructured_markers = {"grid_imask", "grid_rank", "grid_area"}
30
+
31
+ return required_vars.issubset(dataset.variables) and any(
32
+ marker in dataset for marker in unstructured_markers
33
+ )
34
+
35
+
36
+ def _is_mpas(dataset: xr.Dataset) -> bool:
37
+ """Check whether a dataset looks like an MPAS grid."""
38
+ if "verticesOnCell" not in dataset:
39
+ return False
40
+
41
+ companion_groups = (
42
+ {"nEdgesOnCell"},
43
+ {"latCell", "lonCell"},
44
+ {"latVertex", "lonVertex"},
45
+ {"xCell", "yCell", "zCell"},
46
+ {"xVertex", "yVertex", "zVertex"},
47
+ )
48
+
49
+ return any(group.issubset(dataset.variables) for group in companion_groups)
50
+
51
+
52
+ def _is_esmf(dataset: xr.Dataset) -> bool:
53
+ """Check whether a dataset looks like an ESMF mesh."""
54
+ return "maxNodePElement" in dataset.dims and "elementConn" in dataset
55
+
56
+
57
+ def _is_geos_cs(dataset: xr.Dataset) -> bool:
58
+ """Check whether a dataset looks like a GEOS cube-sphere grid."""
59
+ required_dims = {"nf", "YCdim", "XCdim"}
60
+ required_vars = {"corner_lons", "corner_lats"}
61
+
62
+ return required_dims.issubset(dataset.sizes) and required_vars.issubset(
63
+ dataset.variables
64
+ )
65
+
66
+
67
+ def _is_icon(dataset: xr.Dataset) -> bool:
68
+ """Check whether a dataset looks like an ICON grid."""
69
+ required_vars = {"vertex_of_cell", "clon", "clat", "vlon", "vlat"}
70
+ return required_vars.issubset(dataset.variables)
71
+
72
+
73
+ def _is_fesom2(dataset: xr.Dataset) -> bool:
74
+ """Check whether a dataset looks like a FESOM2 grid."""
75
+ return "triag_nodes" in dataset
76
+
77
+
10
78
  def _parse_grid_type(dataset):
11
- """Checks input and contents to determine grid type. Supports detection of
12
- UGrid, SCRIP, Exodus, ESMF, and shape file.
79
+ """Determine the grid type represented by an input dataset.
13
80
 
14
81
  Parameters
15
82
  ----------
16
83
  dataset : Xarray dataset
17
- Xarray dataset of the grid
84
+ Xarray dataset containing grid topology information.
18
85
 
19
86
  Returns
20
87
  -------
21
- mesh_type : str
22
- File type of the file, ug, exo, scrip or shp
88
+ tuple[str, str | None, str | None]
89
+ A 3-tuple of ``(mesh_type, lon_name, lat_name)``. ``mesh_type`` is one
90
+ of ``"Exodus"``, ``"Scrip"``, ``"UGRID"``, ``"MPAS"``, ``"ESMF"``,
91
+ ``"GEOS-CS"``, ``"ICON"``, ``"FESOM2"``, or ``"Structured"``. The
92
+ longitude and latitude coordinate names are only returned for structured
93
+ grids and are otherwise ``None``.
23
94
 
24
95
  Raises
25
96
  ------
26
97
  RuntimeError
27
- If invalid file type
28
- ValueError
29
- If file is not in UGRID format
98
+ If the dataset format cannot be recognized.
30
99
  """
31
100
 
32
101
  _structured, lon_name, lat_name = _is_structured(dataset)
33
102
 
34
- if "coord" in dataset:
35
- # exodus with coord or coordx
36
- mesh_type = "Exodus"
37
- elif "coordx" in dataset:
103
+ if _is_exodus(dataset):
38
104
  mesh_type = "Exodus"
39
- elif "grid_center_lon" in dataset:
40
- # scrip with grid_center_lon
105
+ elif _is_scrip(dataset):
41
106
  mesh_type = "Scrip"
42
107
  elif _is_ugrid(dataset):
43
- # ugrid topology is present
44
108
  mesh_type = "UGRID"
45
- elif "verticesOnCell" in dataset:
109
+ elif _is_mpas(dataset):
46
110
  mesh_type = "MPAS"
47
- elif "maxNodePElement" in dataset.dims:
111
+ elif _is_esmf(dataset):
48
112
  mesh_type = "ESMF"
49
- elif all(key in dataset.sizes for key in ["nf", "YCdim", "XCdim"]):
50
- # expected dimensions for a GEOS cube sphere grid
113
+ elif _is_geos_cs(dataset):
51
114
  mesh_type = "GEOS-CS"
52
- elif "vertex_of_cell" in dataset:
115
+ elif _is_icon(dataset):
53
116
  mesh_type = "ICON"
54
- elif "triag_nodes" in dataset:
117
+ elif _is_fesom2(dataset):
55
118
  mesh_type = "FESOM2"
56
119
  elif _structured:
57
120
  mesh_type = "Structured"
@@ -0,0 +1,229 @@
1
+ from __future__ import annotations
2
+
3
+ from typing import TYPE_CHECKING
4
+
5
+ if TYPE_CHECKING:
6
+ from uxarray.core.dataarray import UxDataArray
7
+ from uxarray.core.dataset import UxDataset
8
+ from uxarray.grid.grid import Grid
9
+
10
+ from uxarray.remap.bilinear import _bilinear
11
+ from uxarray.remap.inverse_distance_weighted import _inverse_distance_weighted_remap
12
+ from uxarray.remap.nearest_neighbor import _nearest_neighbor_remap
13
+
14
+ _VALID_BACKENDS = ("uxarray", "yac")
15
+
16
+
17
+ def _validate_backend(backend: str) -> None:
18
+ if backend not in _VALID_BACKENDS:
19
+ raise ValueError(
20
+ f"Invalid backend '{backend}'. Expected one of {_VALID_BACKENDS}."
21
+ )
22
+
23
+
24
+ class RemapAccessor:
25
+ """Expose remapping methods on UxDataArray and UxDataset objects."""
26
+
27
+ def __init__(self, ux_obj: UxDataArray | UxDataset):
28
+ self.ux_obj = ux_obj
29
+
30
+ def __repr__(self) -> str:
31
+ prefix = f"<{type(self.ux_obj).__name__}.remap>\n"
32
+ return (
33
+ prefix
34
+ + "Supported methods:\n"
35
+ + " • nearest_neighbor(destination_grid, remap_to='faces')\n"
36
+ + " • inverse_distance_weighted(destination_grid, remap_to='faces', power=2, k=8)\n"
37
+ )
38
+
39
+ def __call__(
40
+ self,
41
+ *args,
42
+ backend: str = "uxarray",
43
+ yac_method: str | None = None,
44
+ yac_options: dict | None = None,
45
+ **kwargs,
46
+ ) -> UxDataArray | UxDataset:
47
+ """
48
+ Shortcut for nearest-neighbor remapping.
49
+
50
+ Calling `.remap(...)` with no explicit method will invoke
51
+ `nearest_neighbor(...)`.
52
+
53
+ When ``backend="yac"``, this generic entrypoint can also be used to
54
+ select a YAC-specific interpolation method through ``yac_method``.
55
+ """
56
+ nn_kwargs: dict = {"backend": backend, "yac_options": yac_options}
57
+ if yac_method is not None:
58
+ nn_kwargs["yac_method"] = yac_method
59
+ return self.nearest_neighbor(*args, **nn_kwargs, **kwargs)
60
+
61
+ def nearest_neighbor(
62
+ self,
63
+ destination_grid: Grid,
64
+ remap_to: str = "faces",
65
+ backend: str = "uxarray",
66
+ yac_method: str | None = "nnn",
67
+ yac_options: dict | None = None,
68
+ **kwargs,
69
+ ) -> UxDataArray | UxDataset:
70
+ """
71
+ Perform nearest-neighbor remapping.
72
+
73
+ Each destination point takes the value of its closest source point.
74
+
75
+ Parameters
76
+ ----------
77
+ destination_grid : Grid
78
+ The UXarray grid to which data will be interpolated.
79
+ remap_to : {'nodes', 'edges', 'faces'}, default='faces'
80
+ Which grid element receives the remapped values.
81
+
82
+ backend : {'uxarray', 'yac'}, default='uxarray'
83
+ Remapping backend to use. When set to 'yac', requires YAC to be
84
+ available on PYTHONPATH.
85
+ yac_method : {'nnn', 'average', 'conservative'}, optional
86
+ YAC interpolation method. Defaults to 'nnn' when backend='yac'.
87
+ yac_options : dict, optional
88
+ YAC interpolation configuration options.
89
+
90
+ Returns
91
+ -------
92
+ UxDataArray or UxDataset
93
+ A new object with data mapped onto `destination_grid`.
94
+
95
+ Notes
96
+ -----
97
+ When ``backend="yac"``, remapping uses YAC's low-level ``yac.core``
98
+ Python bindings. See the YAC documentation and installation guide:
99
+
100
+ - https://dkrz-sw.gitlab-pages.dkrz.de/yac/
101
+ - https://dkrz-sw.gitlab-pages.dkrz.de/yac/d1/d9f/installing_yac.html
102
+ """
103
+
104
+ _validate_backend(backend)
105
+ if backend == "yac":
106
+ from uxarray.remap.yac import _yac_remap
107
+
108
+ yac_kwargs = yac_options or {}
109
+ return _yac_remap(
110
+ self.ux_obj, destination_grid, remap_to, yac_method, yac_kwargs
111
+ )
112
+ return _nearest_neighbor_remap(self.ux_obj, destination_grid, remap_to)
113
+
114
+ def inverse_distance_weighted(
115
+ self,
116
+ destination_grid: Grid,
117
+ remap_to: str = "faces",
118
+ power=2,
119
+ k=8,
120
+ backend: str = "uxarray",
121
+ yac_method: str | None = None,
122
+ yac_options: dict | None = None,
123
+ **kwargs,
124
+ ) -> UxDataArray | UxDataset:
125
+ """
126
+ Perform inverse-distance-weighted (IDW) remapping.
127
+
128
+ Each destination point is a weighted average of nearby source points,
129
+ with weights proportional to 1/(distance**power).
130
+
131
+ Parameters
132
+ ----------
133
+ destination_grid : Grid
134
+ The UXarray grid to which data will be interpolated.
135
+ remap_to : {'nodes', 'edges', 'faces'}, default='faces'
136
+ Which grid element receives the remapped values.
137
+ power : int, default=2
138
+ Exponent controlling distance decay. Larger values make the
139
+ interpolation more local.
140
+ k : int, default=8
141
+ Number of nearest source points to include in the weighted average.
142
+
143
+ backend : {'uxarray', 'yac'}, default='uxarray'
144
+ Remapping backend to use. When set to 'yac', requires YAC to be
145
+ available on PYTHONPATH.
146
+ yac_method : {'nnn', 'conservative'}, optional
147
+ YAC interpolation method. Required when backend='yac'.
148
+ yac_options : dict, optional
149
+ YAC interpolation configuration options.
150
+
151
+ Returns
152
+ -------
153
+ UxDataArray or UxDataset
154
+ A new object with data mapped onto `destination_grid`.
155
+
156
+ Notes
157
+ -----
158
+ When ``backend="yac"``, this method delegates to YAC's ``average``
159
+ interpolation method through the low-level ``yac.core`` Python
160
+ bindings. See the YAC documentation and installation guide:
161
+
162
+ - https://dkrz-sw.gitlab-pages.dkrz.de/yac/
163
+ - https://dkrz-sw.gitlab-pages.dkrz.de/yac/d1/d9f/installing_yac.html
164
+ """
165
+
166
+ _validate_backend(backend)
167
+ if backend == "yac":
168
+ raise NotImplementedError(
169
+ "inverse_distance_weighted with backend='yac' is not currently "
170
+ "exposed through the UXarray YAC accessor. "
171
+ "Use backend='uxarray' for IDW, or use the YAC backend through "
172
+ ".remap(..., backend='yac', yac_method=..., yac_options=...)."
173
+ )
174
+ return _inverse_distance_weighted_remap(
175
+ self.ux_obj, destination_grid, remap_to, power, k
176
+ )
177
+
178
+ def bilinear(
179
+ self,
180
+ destination_grid: Grid,
181
+ remap_to: str = "faces",
182
+ backend: str = "uxarray",
183
+ yac_method: str | None = "average",
184
+ yac_options: dict | None = None,
185
+ **kwargs,
186
+ ) -> UxDataArray | UxDataset:
187
+ """
188
+ Perform bilinear remapping.
189
+
190
+ Parameters
191
+ ---------
192
+ destination_grid : Grid
193
+ Destination Grid for remapping
194
+ remap_to : {'nodes', 'edges', 'faces'}, default='faces'
195
+ Which grid element receives the remapped values.
196
+
197
+ backend : {'uxarray', 'yac'}, default='uxarray'
198
+ Remapping backend to use. When set to 'yac', bilinear remapping is
199
+ routed through YAC's average interpolation.
200
+ yac_method : {'average'}, optional
201
+ YAC interpolation method for the bilinear convenience wrapper.
202
+ Only ``'average'`` is supported here.
203
+ yac_options : dict, optional
204
+ YAC interpolation configuration options for the average method.
205
+
206
+ Returns
207
+ -------
208
+ UxDataArray or UxDataset
209
+ A new object with data mapped onto `destination_grid`.
210
+ """
211
+
212
+ _validate_backend(backend)
213
+ if backend == "yac":
214
+ from uxarray.remap.yac import _yac_remap
215
+
216
+ if yac_method not in (None, "average"):
217
+ raise ValueError(
218
+ "bilinear with backend='yac' only supports yac_method='average'. "
219
+ "Use .remap(..., backend='yac', yac_method=...) for other YAC methods."
220
+ )
221
+ yac_kwargs = yac_options or {}
222
+ return _yac_remap(
223
+ self.ux_obj,
224
+ destination_grid,
225
+ remap_to,
226
+ yac_method or "average",
227
+ yac_kwargs,
228
+ )
229
+ return _bilinear(self.ux_obj, destination_grid, remap_to)
@@ -0,0 +1,407 @@
1
+ from __future__ import annotations
2
+
3
+ import importlib
4
+ import importlib.util
5
+ import sys
6
+ from dataclasses import dataclass
7
+ from pathlib import Path
8
+ from types import ModuleType
9
+ from typing import Any
10
+ from uuid import uuid4
11
+
12
+ import numpy as np
13
+
14
+ import uxarray.core.dataarray
15
+ from uxarray.remap.utils import (
16
+ LABEL_TO_COORD,
17
+ _assert_dimension,
18
+ _construct_remapped_ds,
19
+ _get_remap_dims,
20
+ _to_dataset,
21
+ )
22
+
23
+
24
+ class YacNotAvailableError(RuntimeError):
25
+ """Raised when the YAC backend is requested but unavailable."""
26
+
27
+
28
+ @dataclass
29
+ class _YacOptions:
30
+ method: str
31
+ kwargs: dict[str, Any]
32
+
33
+
34
+ def _load_yac_core_from_file() -> ModuleType | None:
35
+ if "yac.core" in sys.modules:
36
+ return sys.modules["yac.core"]
37
+
38
+ for path_entry in sys.path:
39
+ pkg_dir = Path(path_entry) / "yac"
40
+ if not pkg_dir.is_dir():
41
+ continue
42
+
43
+ matches = sorted(pkg_dir.glob("core*.so"))
44
+ if not matches:
45
+ matches = sorted(pkg_dir.glob("core*.pyd"))
46
+ if not matches:
47
+ continue
48
+
49
+ pkg = sys.modules.get("yac")
50
+ if pkg is None:
51
+ pkg = ModuleType("yac")
52
+ sys.modules["yac"] = pkg
53
+ pkg.__path__ = [str(pkg_dir)]
54
+
55
+ spec = importlib.util.spec_from_file_location("yac.core", matches[0])
56
+ if spec is None or spec.loader is None:
57
+ continue
58
+
59
+ module = importlib.util.module_from_spec(spec)
60
+ sys.modules["yac.core"] = module
61
+ spec.loader.exec_module(module)
62
+ setattr(pkg, "core", module)
63
+ return module
64
+
65
+ return None
66
+
67
+
68
+ def _import_yac():
69
+ module = _load_yac_core_from_file()
70
+ if module is not None:
71
+ return module
72
+
73
+ try:
74
+ return importlib.import_module("yac.core")
75
+ except Exception as exc: # pragma: no cover - fallback depends on local install
76
+ raise YacNotAvailableError(
77
+ "YAC backend requested but 'yac.core' is not available. "
78
+ "Build YAC with Python bindings and ensure its site-packages and "
79
+ "shared libraries are discoverable."
80
+ ) from exc
81
+
82
+
83
+ def _normalize_yac_method(yac_method: str | None) -> _YacOptions:
84
+ if not yac_method:
85
+ raise ValueError(
86
+ "backend='yac' requires yac_method to be set to 'nnn', 'average', or 'conservative'."
87
+ )
88
+ method = yac_method.lower()
89
+ if method not in {"nnn", "average", "conservative"}:
90
+ raise ValueError(f"Unsupported YAC method: {yac_method!r}")
91
+ return _YacOptions(method=method, kwargs={})
92
+
93
+
94
+ def _get_location(yac_core, dim: str):
95
+ mapping = {
96
+ "n_face": yac_core.yac_location.YAC_LOC_CELL,
97
+ "n_node": yac_core.yac_location.YAC_LOC_CORNER,
98
+ "n_edge": yac_core.yac_location.YAC_LOC_EDGE,
99
+ }
100
+ try:
101
+ return mapping[dim]
102
+ except KeyError as exc:
103
+ raise ValueError(f"Unsupported remap dimension for YAC: {dim!r}") from exc
104
+
105
+
106
+ def _get_lon_lat(grid, dim: str) -> tuple[np.ndarray, np.ndarray]:
107
+ attr_map = {
108
+ "n_face": ("face_lon", "face_lat"),
109
+ "n_node": ("node_lon", "node_lat"),
110
+ "n_edge": ("edge_lon", "edge_lat"),
111
+ }
112
+ try:
113
+ lon_attr, lat_attr = attr_map[dim]
114
+ except KeyError as exc:
115
+ raise ValueError(f"Unsupported remap dimension for YAC: {dim!r}") from exc
116
+
117
+ lon = getattr(grid, lon_attr, None)
118
+ lat = getattr(grid, lat_attr, None)
119
+ if lon is None or lat is None:
120
+ raise ValueError(
121
+ f"Grid does not provide {lon_attr}/{lat_attr} required for YAC remapping."
122
+ )
123
+ return np.deg2rad(np.asarray(lon.values, dtype=np.float64)), np.deg2rad(
124
+ np.asarray(lat.values, dtype=np.float64)
125
+ )
126
+
127
+
128
+ def _coerce_enum(enum_type, value: Any):
129
+ if not isinstance(value, str):
130
+ return value
131
+
132
+ normalized = value.upper()
133
+ for member in enum_type:
134
+ if member.name == normalized or member.name.endswith(f"_{normalized}"):
135
+ return member
136
+
137
+ raise ValueError(f"Unsupported value {value!r} for enum {enum_type.__name__}.")
138
+
139
+
140
+ class _YacRemapper:
141
+ """Build and reuse YAC interpolation weights for one source dimension.
142
+
143
+ Each instance owns the YAC source/target field registration for a single
144
+ source location type (faces, nodes, or edges) and one requested YAC method.
145
+ The resulting weights can then be applied repeatedly to batches of values
146
+ that share the same source dimension.
147
+ """
148
+
149
+ def __init__(
150
+ self,
151
+ src_grid,
152
+ tgt_grid,
153
+ src_dim: str,
154
+ tgt_dim: str,
155
+ yac_method: str,
156
+ yac_kwargs: dict[str, Any],
157
+ ):
158
+ yac_core = _import_yac()
159
+ self._frac_mask_fallback_value = yac_kwargs.get("frac_mask_fallback_value")
160
+ self._src_location = _get_location(yac_core, src_dim)
161
+ self._tgt_location = _get_location(yac_core, tgt_dim)
162
+
163
+ define_edges = "n_edge" in (src_dim, tgt_dim)
164
+ unique = uuid4().hex
165
+ self._src_grid = yac_core.BasicGrid.from_uxgrid(
166
+ f"uxarray_src_{unique}",
167
+ src_grid,
168
+ def_edges=define_edges,
169
+ )
170
+ self._tgt_grid = yac_core.BasicGrid.from_uxgrid(
171
+ f"uxarray_tgt_{unique}",
172
+ tgt_grid,
173
+ def_edges=define_edges,
174
+ )
175
+ src_lon, src_lat = _get_lon_lat(src_grid, src_dim)
176
+ tgt_lon, tgt_lat = _get_lon_lat(tgt_grid, tgt_dim)
177
+
178
+ self._src_field = yac_core.InterpField(
179
+ self._src_grid.add_coordinates(self._src_location, src_lon, src_lat)
180
+ )
181
+ self._tgt_field = yac_core.InterpField(
182
+ self._tgt_grid.add_coordinates(self._tgt_location, tgt_lon, tgt_lat)
183
+ )
184
+
185
+ stack = yac_core.InterpolationStack()
186
+ if yac_method == "nnn":
187
+ weight_type = _coerce_enum(
188
+ yac_core.yac_interp_nnn_weight_type,
189
+ yac_kwargs.get("reduction_type", yac_kwargs.get("nnn_type")),
190
+ )
191
+ if weight_type is None:
192
+ weight_type = yac_core.yac_interp_nnn_weight_type.YAC_INTERP_NNN_AVG
193
+ stack.add_nnn(
194
+ nnn_type=weight_type,
195
+ n=yac_kwargs.get("n", 1),
196
+ max_search_distance=yac_kwargs.get("max_search_distance", 0.0),
197
+ scale=yac_kwargs.get("scale", 1.0),
198
+ )
199
+ elif yac_method == "average":
200
+ reduction_type = _coerce_enum(
201
+ yac_core.yac_interp_avg_weight_type,
202
+ yac_kwargs.get("reduction_type", yac_kwargs.get("weight_type")),
203
+ )
204
+ if reduction_type is None:
205
+ reduction_type = (
206
+ yac_core.yac_interp_avg_weight_type.YAC_INTERP_AVG_ARITHMETIC
207
+ )
208
+ stack.add_average(
209
+ reduction_type=reduction_type,
210
+ partial_coverage=yac_kwargs.get("partial_coverage", False),
211
+ )
212
+ elif yac_method == "conservative":
213
+ normalisation = _coerce_enum(
214
+ yac_core.yac_interp_method_conserv_normalisation,
215
+ yac_kwargs.get("normalisation"),
216
+ )
217
+ if normalisation is None:
218
+ normalisation = yac_core.yac_interp_method_conserv_normalisation.YAC_INTERP_CONSERV_DESTAREA
219
+ stack.add_conservative(
220
+ order=yac_kwargs.get("order", 1),
221
+ enforced_conserv=yac_kwargs.get("enforced_conserv", False),
222
+ partial_coverage=yac_kwargs.get("partial_coverage", False),
223
+ normalisation=normalisation,
224
+ )
225
+ fixed_value = yac_kwargs.get("fixed_value", 0.0)
226
+ if fixed_value is not None:
227
+ stack.add_fixed(float(fixed_value))
228
+
229
+ self._weights = yac_core.compute_weights(
230
+ stack,
231
+ self._src_field,
232
+ self._tgt_field,
233
+ )
234
+ self._interpolations: dict[int, Any] = {}
235
+ self._src_size = self._src_grid.get_data_size(self._src_location)
236
+ self._tgt_size = self._tgt_grid.get_data_size(self._tgt_location)
237
+
238
+ def apply(
239
+ self, values: np.ndarray, frac_mask: np.ndarray | None = None
240
+ ) -> np.ndarray:
241
+ """Apply the pre-computed interpolation weights to *values*.
242
+
243
+ The interpolation method (NNN or conservative) is determined by
244
+ *yac_method* passed to the constructor and is fixed for the lifetime of
245
+ this remapper instance. This method simply executes the weight
246
+ application; it does not select or alter the interpolation algorithm.
247
+
248
+ Parameters
249
+ ----------
250
+ values : np.ndarray
251
+ 1-D or 2-D array of source-grid values. The trailing dimension must
252
+ equal the number of source points registered with YAC
253
+ (``self._src_size``). When 2-D, the leading dimension is treated as
254
+ the YAC collection size and is remapped in one batched call.
255
+ frac_mask : np.ndarray, optional
256
+ Optional fractional source mask with the same shape as ``values``.
257
+ When provided, it is forwarded to YAC's interpolation call.
258
+
259
+ Returns
260
+ -------
261
+ np.ndarray
262
+ Array of remapped values on the destination grid with the same
263
+ number of leading collections as the input.
264
+ """
265
+ values = np.ascontiguousarray(values, dtype=np.float64)
266
+ if values.ndim == 1:
267
+ values = values.reshape(1, -1)
268
+ elif values.ndim != 2:
269
+ raise ValueError(
270
+ f"YAC remap expects a 1-D or 2-D array, got {values.ndim}-D input."
271
+ )
272
+ if values.shape[1] != self._src_size:
273
+ raise ValueError(
274
+ f"YAC remap expects {self._src_size} values, got {values.shape[1]}."
275
+ )
276
+
277
+ if frac_mask is not None:
278
+ frac_mask = np.ascontiguousarray(frac_mask, dtype=np.float64)
279
+ if frac_mask.ndim == 1:
280
+ frac_mask = frac_mask.reshape(1, -1)
281
+ elif frac_mask.ndim != 2:
282
+ raise ValueError(
283
+ "YAC fractional mask expects a 1-D or 2-D array, "
284
+ f"got {frac_mask.ndim}-D input."
285
+ )
286
+ if frac_mask.shape != values.shape:
287
+ raise ValueError(
288
+ "YAC fractional mask must match remap input shape. "
289
+ f"Got mask shape {frac_mask.shape} and value shape {values.shape}."
290
+ )
291
+
292
+ collection_size = values.shape[0]
293
+ interpolation = self._interpolations.get(collection_size)
294
+ if interpolation is None:
295
+ interpolation = self._weights.get_interpolation(
296
+ collection_size=collection_size,
297
+ frac_mask_fallback_value=self._frac_mask_fallback_value,
298
+ )
299
+ self._interpolations[collection_size] = interpolation
300
+
301
+ out = (
302
+ interpolation(values, frac_mask=frac_mask)
303
+ if frac_mask is not None
304
+ else interpolation(values)
305
+ )
306
+ return np.asarray(out, dtype=np.float64)
307
+
308
+
309
+ def _prepare_frac_mask(frac_mask, da_t, src_values, src_dim: str) -> np.ndarray:
310
+ """Normalize a fractional mask to the flattened shape expected by YAC."""
311
+ if hasattr(frac_mask, "dims"):
312
+ other_dims = [d for d in da_t.dims if d != src_dim]
313
+ frac_mask_values = np.asarray(frac_mask.transpose(*other_dims, src_dim).values)
314
+ else:
315
+ frac_mask_values = np.asarray(frac_mask)
316
+
317
+ if frac_mask_values.shape != src_values.shape:
318
+ raise ValueError(
319
+ "YAC fractional mask must match the remapped source variable shape. "
320
+ f"Got mask shape {frac_mask_values.shape} and source shape {src_values.shape}."
321
+ )
322
+ return frac_mask_values.reshape(-1, frac_mask_values.shape[-1])
323
+
324
+
325
+ def _yac_remap(source, destination_grid, remap_to: str, yac_method: str, yac_kwargs):
326
+ """Remap a UXarray object through YAC and reconstruct the UXarray result.
327
+
328
+ This is the main integration boundary between the public UXarray remap
329
+ accessor and the lower-level ``yac.core`` bindings. It normalizes the
330
+ requested YAC method, validates method-specific constraints, batches each
331
+ remapped variable by its source dimension, and returns a remapped
332
+ ``UxDataArray`` or ``UxDataset`` with UXarray metadata preserved.
333
+ """
334
+ _assert_dimension(remap_to)
335
+ destination_dim = LABEL_TO_COORD[remap_to]
336
+ options = _normalize_yac_method(yac_method)
337
+ options.kwargs.update(yac_kwargs or {})
338
+ ds, is_da, name = _to_dataset(source)
339
+ dims_to_remap = _get_remap_dims(ds)
340
+
341
+ if options.method == "conservative":
342
+ if destination_dim != "n_face":
343
+ raise ValueError(
344
+ "YAC conservative remapping requires the destination to be "
345
+ "face-centered (remap_to='faces'). "
346
+ f"Got remap_to={remap_to!r} which maps to dimension {destination_dim!r}."
347
+ )
348
+ non_face_src = dims_to_remap - {"n_face"}
349
+ if non_face_src:
350
+ raise ValueError(
351
+ "YAC conservative remapping requires all source data to be "
352
+ f"face-centered (dimension 'n_face'). "
353
+ f"Found non-face source dimension(s): {non_face_src}. "
354
+ "Use yac_method='nnn' for node- or edge-centered data."
355
+ )
356
+ remappers: dict[str, _YacRemapper] = {}
357
+ remapped_vars = {}
358
+
359
+ for src_dim in dims_to_remap:
360
+ remappers[src_dim] = _YacRemapper(
361
+ ds.uxgrid,
362
+ destination_grid,
363
+ src_dim,
364
+ destination_dim,
365
+ options.method,
366
+ options.kwargs,
367
+ )
368
+
369
+ for var_name, da in ds.data_vars.items():
370
+ src_dim = next((d for d in da.dims if d in dims_to_remap), None)
371
+ if src_dim is None:
372
+ remapped_vars[var_name] = da
373
+ continue
374
+
375
+ other_dims = [d for d in da.dims if d != src_dim]
376
+ da_t = da.transpose(*other_dims, src_dim)
377
+ src_values = np.asarray(da_t.values)
378
+ flat_src = src_values.reshape(-1, src_values.shape[-1])
379
+ frac_masks = yac_kwargs.get("frac_masks")
380
+ frac_mask = (
381
+ frac_masks.get(var_name)
382
+ if isinstance(frac_masks, dict) and var_name in frac_masks
383
+ else yac_kwargs.get("frac_mask")
384
+ )
385
+ flat_frac_mask = None
386
+ if frac_mask is not None:
387
+ flat_frac_mask = _prepare_frac_mask(frac_mask, da_t, src_values, src_dim)
388
+ remapper = remappers[src_dim]
389
+ out_flat = remapper.apply(flat_src, frac_mask=flat_frac_mask)
390
+
391
+ out_shape = src_values.shape[:-1] + (remapper._tgt_size,)
392
+ out_values = out_flat.reshape(out_shape)
393
+ coords = {dim: da.coords[dim] for dim in other_dims if dim in da.coords}
394
+ da_out = uxarray.core.dataarray.UxDataArray(
395
+ out_values,
396
+ dims=other_dims + [destination_dim],
397
+ coords=coords,
398
+ name=da.name,
399
+ attrs=da.attrs,
400
+ uxgrid=destination_grid,
401
+ )
402
+ remapped_vars[var_name] = da_out
403
+
404
+ ds_remapped = _construct_remapped_ds(
405
+ source, remapped_vars, destination_grid, remap_to
406
+ )
407
+ return ds_remapped[name] if is_da else ds_remapped
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: uxarray
3
- Version: 2026.3.0
3
+ Version: 2026.4.1
4
4
  Summary: Xarray extension for unstructured climate and global weather data analysis and visualization.
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  License: Apache License
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  Version 2.0, January 2004
@@ -80,6 +80,7 @@ uxarray/remap/inverse_distance_weighted.py
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  uxarray/remap/nearest_neighbor.py
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  uxarray/remap/spatial_coords_remap.py
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  uxarray/remap/utils.py
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+ uxarray/remap/yac.py
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  uxarray/subset/__init__.py
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  uxarray/subset/dataarray_accessor.py
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  uxarray/subset/grid_accessor.py
@@ -1,112 +0,0 @@
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- from __future__ import annotations
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-
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- from typing import TYPE_CHECKING
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-
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- if TYPE_CHECKING:
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- from uxarray.core.dataarray import UxDataArray
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- from uxarray.core.dataset import UxDataset
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- from uxarray.grid.grid import Grid
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-
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- from uxarray.remap.bilinear import _bilinear
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- from uxarray.remap.inverse_distance_weighted import _inverse_distance_weighted_remap
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- from uxarray.remap.nearest_neighbor import _nearest_neighbor_remap
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-
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-
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- class RemapAccessor:
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- """Expose remapping methods on UxDataArray and UxDataset objects."""
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-
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- def __init__(self, ux_obj: UxDataArray | UxDataset):
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- self.ux_obj = ux_obj
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-
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- def __repr__(self) -> str:
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- prefix = f"<{type(self.ux_obj).__name__}.remap>\n"
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- return (
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- prefix
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- + "Supported methods:\n"
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- + " • nearest_neighbor(destination_grid, remap_to='faces')\n"
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- + " • inverse_distance_weighted(destination_grid, remap_to='faces', power=2, k=8)\n"
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- )
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-
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- def __call__(self, *args, **kwargs) -> UxDataArray | UxDataset:
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- """
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- Shortcut for nearest-neighbor remapping.
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-
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- Calling `.remap(...)` with no explicit method will invoke
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- `nearest_neighbor(...)`.
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- """
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- return self.nearest_neighbor(*args, **kwargs)
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-
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- def nearest_neighbor(
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- self, destination_grid: Grid, remap_to: str = "faces", **kwargs
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- ) -> UxDataArray | UxDataset:
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- """
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- Perform nearest-neighbor remapping.
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-
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- Each destination point takes the value of its closest source point.
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-
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- Parameters
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- ----------
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- destination_grid : Grid
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- The UXarray grid to which data will be interpolated.
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- remap_to : {'nodes', 'edges', 'faces'}, default='faces'
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- Which grid element receives the remapped values.
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-
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- Returns
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- -------
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- UxDataArray or UxDataset
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- A new object with data mapped onto `destination_grid`.
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- """
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-
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- return _nearest_neighbor_remap(self.ux_obj, destination_grid, remap_to)
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-
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- def inverse_distance_weighted(
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- self, destination_grid: Grid, remap_to: str = "faces", power=2, k=8, **kwargs
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- ) -> UxDataArray | UxDataset:
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- """
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- Perform inverse-distance-weighted (IDW) remapping.
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-
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- Each destination point is a weighted average of nearby source points,
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- with weights proportional to 1/(distance**power).
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-
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- Parameters
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- ----------
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- destination_grid : Grid
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- The UXarray grid to which data will be interpolated.
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- remap_to : {'nodes', 'edges', 'faces'}, default='faces'
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- Which grid element receives the remapped values.
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- power : int, default=2
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- Exponent controlling distance decay. Larger values make the
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- interpolation more local.
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- k : int, default=8
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- Number of nearest source points to include in the weighted average.
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-
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- Returns
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- -------
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- UxDataArray or UxDataset
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- A new object with data mapped onto `destination_grid`.
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- """
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-
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- return _inverse_distance_weighted_remap(
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- self.ux_obj, destination_grid, remap_to, power, k
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- )
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-
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- def bilinear(
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- self, destination_grid: Grid, remap_to: str = "faces", **kwargs
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- ) -> UxDataArray | UxDataset:
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- """
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- Perform bilinear remapping.
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-
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- Parameters
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- ---------
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- destination_grid : Grid
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- Destination Grid for remapping
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- remap_to : {'nodes', 'edges', 'faces'}, default='faces'
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- Which grid element receives the remapped values.
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-
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- Returns
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- -------
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- UxDataArray or UxDataset
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- A new object with data mapped onto `destination_grid`.
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- """
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-
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- return _bilinear(self.ux_obj, destination_grid, remap_to)
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