upgini 1.1.267a3254.post3__tar.gz → 1.1.268a1__tar.gz

{upgini-1.1.267a3254.post3/src/upgini.egg-info → upgini-1.1.268a1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: upgini
-Version: 1.1.267a3254.post3
+Version: 1.1.268a1
 Summary: Intelligent data search & enrichment for Machine Learning
 Home-page: https://upgini.com/
 Author: Upgini Developers

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/setup.py

@@ -40,7 +40,7 @@ def send_log(msg: str):
 
 
 here = Path(__file__).parent.resolve()
-version = "1.1.267a3254-3"
+version = "1.1.268a1"
 try:
     send_log(f"Start setup PyLib version {version}")
     setup(

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/src/upgini/autofe/all_operands.py

@@ -1,5 +1,5 @@
 from typing import Dict
-from upgini.autofe.date import DateDiff, DateDiffType2, DateListDiff, DateListDiffBounded
+from upgini.autofe.date import DateDiff, DateDiffType2
 from upgini.autofe.groupby import GroupByThenAgg, GroupByThenRank
 from upgini.autofe.operand import Operand
 from upgini.autofe.unary import Abs, Log, Residual, Sqrt, Square, Sigmoid, Floor, Freq
@@ -38,16 +38,6 @@ ALL_OPERANDS: Dict[str, Operand] = {
         Sim(),
         DateDiff(),
         DateDiffType2(),
-        DateListDiff(aggregation="min"),
-        DateListDiff(aggregation="max"),
-        DateListDiff(aggregation="mean"),
-        DateListDiff(aggregation="nunique"),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=0, upper_bound=18),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=18, upper_bound=23),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=23, upper_bound=30),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=30, upper_bound=45),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=45, upper_bound=60),
-        DateListDiffBounded(diff_unit="Y", aggregation="count", lower_bound=60),
     ]
 }
 

upgini-1.1.268a1/src/upgini/autofe/date.py

@@ -0,0 +1,53 @@
+from typing import Optional, Union
+import numpy as np
+import pandas as pd
+
+from upgini.autofe.operand import PandasOperand
+
+
+class DateDiffMixin:
+    diff_unit: str = "D"
+    left_unit: Optional[str] = None
+    right_unit: Optional[str] = None
+
+    def _convert_to_date(
+        self, x: Union[pd.DataFrame, pd.Series], unit: Optional[str]
+    ) -> Union[pd.DataFrame, pd.Series]:
+        if isinstance(x, pd.DataFrame):
+            return x.apply(lambda y: self._convert_to_date(y, unit), axis=1)
+
+        return pd.to_datetime(x, unit=unit)
+
+
+class DateDiff(PandasOperand, DateDiffMixin):
+    name = "date_diff"
+    is_binary = True
+    has_symmetry_importance = True
+
+    def calculate_binary(self, left: pd.Series, right: pd.Series) -> pd.Series:
+        left = self._convert_to_date(left, self.left_unit)
+        right = self._convert_to_date(right, self.right_unit)
+        return self.__replace_negative((left - right) / np.timedelta64(1, self.diff_unit))
+
+    def __replace_negative(self, x: Union[pd.DataFrame, pd.Series]):
+        x[x < 0] = None
+        return x
+
+
+class DateDiffType2(PandasOperand, DateDiffMixin):
+    name = "date_diff_type2"
+    is_binary = True
+    has_symmetry_importance = True
+    is_vectorizable = False
+
+    def calculate_binary(self, left: pd.Series, right: pd.Series) -> pd.Series:
+        left = self._convert_to_date(left, self.left_unit)
+        right = self._convert_to_date(right, self.right_unit)
+        future = right + (left.dt.year - right.dt.year).apply(
+            lambda y: np.datetime64("NaT") if np.isnan(y) else pd.tseries.offsets.DateOffset(years=y)
+        )
+        before = future[future < left]
+        future[future < left] = before + pd.tseries.offsets.DateOffset(years=1)
+        diff = (future - left) / np.timedelta64(1, self.diff_unit)
+
+        return diff

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/src/upgini/features_enricher.py

@@ -3665,7 +3665,7 @@ class FeaturesEnricher(TransformerMixin):
                     if y is not None:
                         with open(f"{tmp_dir}/y.pickle", "wb") as y_file:
                             pickle.dump(sample(y, xy_sample_index), y_file)
-                        if eval_set is not None:
+                        if eval_set:
                             eval_xy_sample_index = rnd.randint(0, _num_samples(eval_set[0][0]), size=1000)
                             with open(f"{tmp_dir}/eval_x.pickle", "wb") as eval_x_file:
                                 pickle.dump(sample(eval_set[0][0], eval_xy_sample_index), eval_x_file)

upgini-1.1.268a1/src/upgini/fingerprint.js

@@ -0,0 +1,8 @@
+/**
+ * FingerprintJS v3.4.2 - Copyright (c) FingerprintJS, Inc, 2023 (https://fingerprint.com)
+ * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
+ *
+ * This software contains code from open-source projects:
+ * MurmurHash3 by Karan Lyons (https://github.com/karanlyons/murmurHash3.js)
+ */
+var e=function(){return e=Object.assign||function(e){for(var n,t=1,r=arguments.length;t<r;t++)for(var o in n=arguments[t])Object.prototype.hasOwnProperty.call(n,o)&&(e[o]=n[o]);return e},e.apply(this,arguments)};function n(e,n,t,r){return new(t||(t=Promise))((function(o,a){function i(e){try{u(r.next(e))}catch(n){a(n)}}function c(e){try{u(r.throw(e))}catch(n){a(n)}}function u(e){var n;e.done?o(e.value):(n=e.value,n instanceof t?n:new t((function(e){e(n)}))).then(i,c)}u((r=r.apply(e,n||[])).next())}))}function t(e,n){var t,r,o,a,i={label:0,sent:function(){if(1&o[0])throw o[1];return o[1]},trys:[],ops:[]};return a={next:c(0),throw:c(1),return:c(2)},"function"==typeof Symbol&&(a[Symbol.iterator]=function(){return this}),a;function c(c){return function(u){return function(c){if(t)throw new TypeError("Generator is already executing.");for(;a&&(a=0,c[0]&&(i=0)),i;)try{if(t=1,r&&(o=2&c[0]?r.return:c[0]?r.throw||((o=r.return)&&o.call(r),0):r.next)&&!(o=o.call(r,c[1])).done)return 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{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/src/upgini/metrics.py

@@ -12,6 +12,7 @@ from numpy import log1p
 from pandas.api.types import is_numeric_dtype
 from sklearn.metrics import check_scoring, get_scorer, make_scorer, roc_auc_score
 
+from upgini.utils.features_validator import FeaturesValidator
 from upgini.utils.sklearn_ext import cross_validate
 
 try:
@@ -420,6 +421,7 @@ class CatBoostWrapper(EstimatorWrapper):
         )
         self.cat_features = None
         self.emb_features = None
+        self.exclude_features = []
 
     def _prepare_to_fit(self, X: pd.DataFrame, y: pd.Series) -> Tuple[pd.DataFrame, np.ndarray, np.ndarray, dict]:
         X, y, groups, params = super()._prepare_to_fit(X, y)
@@ -498,6 +500,8 @@ class CatBoostWrapper(EstimatorWrapper):
         return df, [emb_name]
 
     def _prepare_to_calculate(self, X: pd.DataFrame, y: pd.Series) -> Tuple[pd.DataFrame, np.ndarray, dict]:
+        if self.exclude_features:
+            X = X.drop(columns=self.exclude_features)
         X, y, params = super()._prepare_to_calculate(X, y)
         if self.text_features:
             params["text_features"] = self.text_features
@@ -510,6 +514,26 @@ class CatBoostWrapper(EstimatorWrapper):
 
         return X, y, params
 
+    def cross_val_predict(
+        self, X: pd.DataFrame, y: np.ndarray, baseline_score_column: Optional[Any] = None
+    ) -> Optional[float]:
+        try:
+            super().cross_val_predict(X, y, baseline_score_column)
+        except Exception as e:
+            if "Dictionary size is 0" in e.args[0] and self.text_features:
+                high_cardinality_features = FeaturesValidator.find_high_cardinality(X[self.text_features])
+                self.logger.warning(
+                    "Failed to calculate metrics. Try to remove high cardinality"
+                    f" text features {high_cardinality_features} and retry"
+                )
+                for f in high_cardinality_features:
+                    self.text_features.remove(f)
+                    self.exclude_features.append(f)
+                    X = X.drop(columns=f)
+                super().cross_val_predict(X, y, baseline_score_column)
+            else:
+                raise e
+
 
 class LightGBMWrapper(EstimatorWrapper):
     def __init__(

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1/src/upgini.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: upgini
-Version: 1.1.267a3254.post3
+Version: 1.1.268a1
 Summary: Intelligent data search & enrichment for Machine Learning
 Home-page: https://upgini.com/
 Author: Upgini Developers

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/src/upgini.egg-info/SOURCES.txt

@@ -7,6 +7,7 @@ src/upgini/ads.py
 src/upgini/dataset.py
 src/upgini/errors.py
 src/upgini/features_enricher.py
+src/upgini/fingerprint.js
 src/upgini/http.py
 src/upgini/metadata.py
 src/upgini/metrics.py

upgini-1.1.268a1/tests/test_autofe_operands.py

@@ -0,0 +1,27 @@
+import pandas as pd
+from upgini.autofe.date import DateDiff, DateDiffType2
+
+from datetime import datetime
+from pandas.testing import assert_series_equal
+
+
+def test_date_diff():
+    df = pd.DataFrame(
+        [[datetime(1993, 12, 10), datetime(2022, 10, 10)], [datetime(2023, 10, 10), datetime(2022, 10, 10)]],
+        columns=["date1", "date2"],
+    )
+
+    operand = DateDiff()
+    expected_result = pd.Series([10531, None])
+    assert_series_equal(operand.calculate_binary(df.date2, df.date1), expected_result)
+
+
+def test_date_diff_future():
+    df = pd.DataFrame(
+        [[datetime(1993, 12, 10), datetime(2022, 10, 10)], [datetime(1993, 4, 10), datetime(2022, 10, 10)]],
+        columns=["date1", "date2"],
+    )
+
+    operand = DateDiffType2()
+    expected_result = pd.Series([61.0, 182.0])
+    assert_series_equal(operand.calculate_binary(df.date2, df.date1), expected_result)

{upgini-1.1.267a3254.post3 → upgini-1.1.268a1}/tests/test_target_utils.py

@@ -140,7 +140,7 @@ def test_binary_psi_calculation():
         "target": [0, 0, 0, 0, 0, 1, 1, 1, 1, 1,   0, 0, 0, 0, 0, 1, 0, 1, 0, 1]
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert not enricher.warning_counter.has_warnings()
 
@@ -148,7 +148,7 @@ def test_binary_psi_calculation():
         "target": [0, 0, 0, 0, 0, 1, 1, 1, 1, 1,   0, 0, 0, 0, 0, 0, 0, 1, 0, 1]
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert enricher.warning_counter._count == 1
 
@@ -157,7 +157,7 @@ def test_binary_psi_calculation():
         "eval_set_index": [0] * 10 + [1] * 10,
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert enricher.warning_counter._count == 1
 
@@ -166,7 +166,7 @@ def test_binary_psi_calculation():
         "eval_set_index": [0] * 10 + [1] * 10,
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert enricher.warning_counter._count == 2
 
@@ -177,7 +177,7 @@ def test_regression_psi_calculation():
         "target": random.rand(20)
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert enricher.warning_counter._count == 1
 
@@ -189,6 +189,6 @@ def test_regression_psi_calculation():
         "target": list(values1) + list(values2)
     })
     df["date"] = pd.date_range("2020-01-01", "2020-01-20")
-    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE})
+    enricher = FeaturesEnricher(search_keys={"date": SearchKey.DATE}, logs_enabled=False)
     enricher._validate_PSI(df)
     assert not enricher.warning_counter.has_warnings()

upgini-1.1.267a3254.post3/src/upgini/autofe/date.py

@@ -1,117 +0,0 @@
-import abc
-from typing import Any, List, Optional, Union
-import numpy as np
-import pandas as pd
-from pydantic import BaseModel
-
-from upgini.autofe.operand import PandasOperand
-
-
-class DateDiffMixin(BaseModel):
-    diff_unit: str = "D"
-    left_unit: Optional[str] = None
-    right_unit: Optional[str] = None
-
-    def _convert_to_date(
-        self, x: Union[pd.DataFrame, pd.Series], unit: Optional[str]
-    ) -> Union[pd.DataFrame, pd.Series]:
-        if isinstance(x, pd.DataFrame):
-            return x.apply(lambda y: self._convert_to_date(y, unit), axis=1)
-
-        return pd.to_datetime(x, unit=unit)
-
-
-class DateDiff(PandasOperand, DateDiffMixin):
-    name = "date_diff"
-    is_binary = True
-    has_symmetry_importance = True
-
-    def calculate_binary(self, left: pd.Series, right: pd.Series) -> pd.Series:
-        left = self._convert_to_date(left, self.left_unit)
-        right = self._convert_to_date(right, self.right_unit)
-        return self.__replace_negative((left - right) / np.timedelta64(1, self.diff_unit))
-
-    def __replace_negative(self, x: Union[pd.DataFrame, pd.Series]):
-        x[x < 0] = None
-        return x
-
-
-class DateDiffType2(PandasOperand, DateDiffMixin):
-    name = "date_diff_type2"
-    is_binary = True
-    has_symmetry_importance = True
-
-    def calculate_binary(self, left: pd.Series, right: pd.Series) -> pd.Series:
-        left = self._convert_to_date(left, self.left_unit)
-        right = self._convert_to_date(right, self.right_unit)
-        future = right + (left.dt.year - right.dt.year).apply(
-            lambda y: np.datetime64("NaT") if np.isnan(y) else pd.tseries.offsets.DateOffset(years=y)
-        )
-        before = future[future < left]
-        future[future < left] = before + pd.tseries.offsets.DateOffset(years=1)
-        diff = (future - left) / np.timedelta64(1, self.diff_unit)
-
-        return diff
-
-
-_ext_aggregations = {"nunique": (lambda x: len(np.unique(x)), 0), "count": (len, 0)}
-
-
-class DateListDiff(PandasOperand, DateDiffMixin):
-    is_binary = True
-    has_symmetry_importance = True
-    aggregation: str
-
-    def __init__(self, **data: Any) -> None:
-        if "name" not in data:
-            data["name"] = f"date_diff_{data.get('aggregation')}"
-        super().__init__(**data)
-
-    def map_diff(self, left: np.datetime64, right: list) -> list:
-        return (left - self._convert_to_date(pd.Series(right), self.right_unit)) / np.timedelta64(1, self.diff_unit)
-
-    def reduce(self, diff_list: pd.Series) -> float:
-        return diff_list[diff_list > 0].aggregate(self.aggregation)
-
-    def calculate_binary(self, left: pd.Series, right: pd.Series) -> pd.Series:
-        left = self._convert_to_date(left, self.left_unit)
-        right = right.apply(lambda x: pd.arrays.DatetimeArray(self._convert_to_date(x, self.right_unit)))
-
-        return pd.Series(left - right.values).apply(lambda x: self._agg(self._diff(x)))
-
-    def _diff(self, x):
-        x = x / np.timedelta64(1, self.diff_unit)
-        return x[x > 0]
-
-    def _agg(self, x):
-        method = getattr(np, self.aggregation, None)
-        default = np.nan
-        if method is None and self.aggregation in _ext_aggregations:
-            method, default = _ext_aggregations[self.aggregation]
-        elif not callable(method):
-            raise ValueError(f"Unsupported aggregation: {self.aggregation}")
-
-        return method(x) if len(x) > 0 else default
-
-
-class DateListDiffBounded(DateListDiff):
-    lower_bound: Optional[int]
-    upper_bound: Optional[int]
-
-    def __init__(self, **data: Any) -> None:
-        if "name" not in data:
-            lower_bound = data.get("lower_bound")
-            upper_bound = data.get("upper_bound")
-            components = [
-                "date_diff",
-                data.get("diff_unit"),
-                str(lower_bound if lower_bound is not None else "minusinf"),
-                str(upper_bound if upper_bound is not None else "plusinf"),
-            ]
-            components.append(data.get("aggregation"))
-            data["name"] = "_".join(components)
-        super().__init__(**data)
-
-    def _agg(self, x):
-        x = x[(x >= (self.lower_bound or -np.inf)) & (x < (self.upper_bound or np.inf))]
-        return super()._agg(x)

upgini-1.1.267a3254.post3/tests/test_autofe_operands.py

@@ -1,94 +0,0 @@
-import pandas as pd
-from pydantic import NoneBytes
-from upgini.autofe.date import DateDiff, DateDiffType2, DateListDiff, DateListDiffBounded
-
-from datetime import datetime
-from pandas.testing import assert_series_equal
-
-
-def test_date_diff():
-    df = pd.DataFrame(
-        [
-            ["2022-10-10", pd.to_datetime("1993-12-10").timestamp()],
-            ["2022-10-10", pd.to_datetime("2023-10-10").timestamp()],
-        ],
-        columns=["date1", "date2"],
-    )
-
-    operand = DateDiff(right_unit="s")
-    expected_result = pd.Series([10531, None])
-    assert_series_equal(operand.calculate_binary(df.date1, df.date2), expected_result)
-
-
-def test_date_diff_type2():
-    df = pd.DataFrame(
-        [
-            [pd.to_datetime("2022-10-10").timestamp(), datetime(1993, 12, 10)],
-            [pd.to_datetime("2022-10-10").timestamp(), datetime(1993, 4, 10)],
-        ],
-        columns=["date1", "date2"],
-    )
-
-    operand = DateDiffType2(left_unit="s")
-    expected_result = pd.Series([61.0, 182.0])
-    assert_series_equal(operand.calculate_binary(df.date1, df.date2), expected_result)
-
-
-def test_date_diff_list():
-    df = pd.DataFrame(
-        [
-            ["2022-10-10", ["1993-12-10", "1993-12-11"]],
-            ["2022-10-10", ["1993-12-10", "1993-12-10"]],
-            ["2022-10-10", ["2023-10-10"]],
-            ["2022-10-10", []],
-        ],
-        columns=["date1", "date2"],
-    )
-
-    def check(aggregation, expected_name, expected_values):
-        operand = DateListDiff(aggregation=aggregation)
-        assert operand.name == expected_name
-        assert_series_equal(operand.calculate_binary(df.date1, df.date2).rename(None), expected_values)
-
-    check(aggregation="min", expected_name="date_diff_min", expected_values=pd.Series([10530, 10531, None, None]))
-    check(aggregation="max", expected_name="date_diff_max", expected_values=pd.Series([10531, 10531, None, None]))
-    check(aggregation="mean", expected_name="date_diff_mean", expected_values=pd.Series([10530.5, 10531, None, None]))
-    check(aggregation="nunique", expected_name="date_diff_nunique", expected_values=pd.Series([2, 1, 0, 0]))
-
-
-def test_date_diff_list_bounded():
-    df = pd.DataFrame(
-        [
-            ["2022-10-10", ["2013-12-10", "2013-12-11", "1999-12-11"]],
-            [
-                "2022-10-10",
-                [
-                    "2013-12-10",
-                    "2003-12-11",
-                    "1999-12-11",
-                    "1993-12-11",
-                    "1983-12-11",
-                    "1973-12-11",
-                    "1959-12-11",
-                ],
-            ],
-            ["2022-10-10", ["2003-12-10", "2003-12-10"]],
-            ["2022-10-10", ["2023-10-10", "1993-12-10"]],
-            ["2022-10-10", []],
-        ],
-        columns=["date1", "date2"],
-    )
-
-    def check_num_by_years(lower_bound, upper_bound, expected_name, expected_values):
-        operand = DateListDiffBounded(
-            diff_unit="Y", aggregation="count", lower_bound=lower_bound, upper_bound=upper_bound
-        )
-        assert operand.name == expected_name
-        assert_series_equal(operand.calculate_binary(df.date1, df.date2).rename(None), expected_values)
-
-    check_num_by_years(0, 18, "date_diff_Y_0_18_count", pd.Series([2, 1, 0, 0, 0]))
-    check_num_by_years(18, 23, "date_diff_Y_18_23_count", pd.Series([1, 2, 2, 0, 0]))
-    check_num_by_years(23, 30, "date_diff_Y_23_30_count", pd.Series([0, 1, 0, 1, 0]))
-    check_num_by_years(30, 45, "date_diff_Y_30_45_count", pd.Series([0, 1, 0, 0, 0]))
-    check_num_by_years(45, 60, "date_diff_Y_45_60_count", pd.Series([0, 1, 0, 0, 0]))
-    check_num_by_years(60, None, "date_diff_Y_60_plusinf_count", pd.Series([0, 1, 0, 0, 0]))