tsio 1.0.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- tsio-1.0.0/.envrc.example +2 -0
- tsio-1.0.0/.github/workflows/ci.yml +48 -0
- tsio-1.0.0/.github/workflows/publish.yml +67 -0
- tsio-1.0.0/.github/workflows/release.yml +36 -0
- tsio-1.0.0/.gitignore +53 -0
- tsio-1.0.0/CHANGELOG.md +7 -0
- tsio-1.0.0/LICENSE.txt +674 -0
- tsio-1.0.0/PKG-INFO +530 -0
- tsio-1.0.0/README.md +478 -0
- tsio-1.0.0/pyproject.toml +86 -0
- tsio-1.0.0/tests/__init__.py +0 -0
- tsio-1.0.0/tests/assets/1138622_small_slice_42.tif +0 -0
- tsio-1.0.0/tests/assets/heart16.png +0 -0
- tsio-1.0.0/tests/assets/sample_1.docx +0 -0
- tsio-1.0.0/tests/assets/v09_loaded_confusion_matrix.png +0 -0
- tsio-1.0.0/tests/test_cli.py +1938 -0
- tsio-1.0.0/tsio/__init__.py +1 -0
- tsio-1.0.0/tsio/cli.py +618 -0
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name: CI
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on:
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push:
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branches: ["main"]
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pull_request:
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branches: ["main"]
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jobs:
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test:
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strategy:
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fail-fast: false
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matrix:
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os: [macos-latest, ubuntu-latest, windows-latest]
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python-version: ["3.11", "3.12", "3.13"]
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timeout-minutes: 10
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runs-on: ${{ matrix.os }}
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steps:
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- name: Checkout source code
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uses: actions/checkout@v7
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v7
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with:
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cache: pip
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[dev]
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- name: Lint with flake8
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run: |
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# stop the build if there are Python syntax errors or undefined names
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flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Test with pytest
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run: |
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pytest --color=yes --cov=tsio --cov-branch --cov-report=xml --cov-report=term-missing
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- name: Upload coverage reports to Codecov
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uses: codecov/codecov-action@v7
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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name: Publish to Python Package Indices
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on:
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push:
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tags:
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- "v*.*.*"
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workflow_dispatch:
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jobs:
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envelope:
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name: Upload release to Envelope.dev
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runs-on: ubuntu-latest
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environment: release
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steps:
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- name: Checkout
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uses: actions/checkout@v7
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with:
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@vy
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with:
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cache: pip
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python-version: 3.11
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- name: Install build tools
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run: python -m pip install --upgrade build
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- name: Build wheel
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run: python -m build
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- name: Publish wheel
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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attestations: false
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password: ${{ secrets.ENVELOPE_TOKEN }}
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user: pypi
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repository-url: https://app.envelope.dev/legacy/
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pypi:
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name: Upload release to the Python Package Index (PyPI)
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runs-on: ubuntu-latest
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environment: release
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permissions:
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id-token: write
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steps:
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- name: Checkout source code
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uses: actions/checkout@v7
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with:
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@v7
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with:
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cache: pip
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python-version: 3.11
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- name: Install build tools
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run: python3 -m pip install --upgrade build
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- name: Build wheel
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run: python3 -m build
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- name: Publish wheel
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uses: pypa/gh-action-pypi-publish@release/v1
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name: Release
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on:
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push:
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tags:
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- "v*.*.*" # Run workflow on version tags, e.g. v1.0.0.
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workflow_dispatch:
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jobs:
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release:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v7
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- name: Read changelog
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id: changelog
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run: |
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awk '/^## / {s++} s == 1 {print}' CHANGELOG.md > release_notes.md
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export RELEASE_TITLE=$(head -1 release_notes.md|sed 's/## //')
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awk 'NR > 2 { print }' release_notes.md > release_body.md
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echo "title=${RELEASE_TITLE}" >> $GITHUB_OUTPUT
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echo "path=release_body.md" >> $GITHUB_OUTPUT
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echo "version=${GITHUB_REF#refs/*/}" >> $GITHUB_OUTPUT
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- name: Create release
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id: create_release
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uses: softprops/action-gh-release@v2
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with:
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tag_name: ${{ github.ref }}
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name: ${{ steps.changelog.outputs.title }}
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body_path: ${{ steps.changelog.outputs.path }}
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token: ${{ secrets.GITHUB_TOKEN }}
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draft: false
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tsio-1.0.0/.gitignore
ADDED
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.DS_Store
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.idea
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*.log
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*.err
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tmp/
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.tmp/
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.ipynb_checkpoints/
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*.py[cod]
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*.egg
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*.egg-info/
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*.manifest
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*.spec
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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sdist/
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wheels/
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coverage.xml
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htmlcov
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.coverage
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.coverage.*
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.pytest_cache
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.cache
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.tox
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.nox
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.flake8
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pyrightconfig.json
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basedpyrightconfig.json
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.direnv
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.envrc
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.env
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.envr
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env/
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.venv
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venv/
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*.png
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*.tif
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*.jpg
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*.emd
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*.dcm
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*.dm3
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*.dm4
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!requirements.txt
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!tests/assets/*.png
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!tests/assets/*.tif
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.projectile-cache.eld
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