tripper 0.4.3__tar.gz → 0.5.2__tar.gz

{tripper-0.4.3 → tripper-0.5.2}/.github/workflows/cd_release.yml

@@ -49,7 +49,7 @@ jobs:
 
     steps:
       - name: Download built distritbution
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v8
         with:
           name: dist
           path: dist

{tripper-0.4.3 → tripper-0.5.2}/.github/workflows/ci_tests.yml

@@ -5,7 +5,7 @@ on:
   push:
     branches:
       - 'master'
-      - 'push-action/**'  # Allow pushing to protected branches (using CasperWA/push-protected)
+      - 'push-action/**'  # Allow pushing to protected branches
 
 jobs:
   basic-tests:
@@ -55,7 +55,7 @@ jobs:
       - name: Run Safety CLI to check for vulnerabilities
         uses: pyupio/safety-action@v1
         with:
-          api-key: ${{ secrets.SAFETY_API_KEY }}
+          api-key: ${{ secrets.SAFETY_API_KEY2 }}
           args: --detailed-output # To always see detailed output from this action
 
   pytest:
@@ -79,20 +79,20 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14.0-rc.2"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
 
     steps:
     - name: Checkout tripper
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 
     - name: Install dependencies
       run: |
-        sudo apt install graphviz
+        # sudo apt install graphviz
         python -m pip install -U pip
         pip install -U setuptools wheel flit
         pip install -e .[testing]
@@ -105,7 +105,7 @@ jobs:
 
     - name: Upload coverage to Codecov
       if: matrix.python-version == '3.11' && github.repository == 'EMMC-ASBL/tripper'
-      uses: codecov/codecov-action@v5
+      uses: codecov/codecov-action@v6
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -118,20 +118,19 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14.0-rc.2"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
 
     steps:
     - name: Checkout tripper
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 
-    - name: Install dependencies
+    - name: Install minimal dependencies
       run: |
-        sudo apt install graphviz
         python -m pip install -U pip
         pip install -U setuptools wheel flit
         pip install -e .[testing-core]

{tripper-0.4.3 → tripper-0.5.2}/.gitignore

@@ -16,6 +16,11 @@ site/
 # Build
 dist/
 
+# Profiling
+prof/
+
 # Test output
 route.svg
 coverage.xml
+
+old

tripper-0.5.2/.hooks/generate-context-and-doc.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+
+# Enter repository root directory
+HERE="$(cd "$(dirname "$0")" && pwd)"
+cd "$HERE"/..
+
+# Generate JSON-LD context and keyword documentation
+python tripper/datadoc/keywords.py \
+    --explanation \
+    --special-keywords \
+    --write-context=tripper/context/0.3/context.json \
+    --write-kw-md=docs/datadoc/keywords.md \
+    --write-prefixes=docs/datadoc/prefixes.md
+
+python tripper/datadoc/keywords.py \
+    --explanation \
+    --write-context=tripper/context/process/0.1/context.json \
+    --write-kw-md=docs/datadoc/keywords-process.md \
+    --write-prefixes=docs/datadoc/prefixes-process.md
+
+
+# Don't crash pre-commit in case the above fails on GitHub
+exit 0

{tripper-0.4.3 → tripper-0.5.2}/.pre-commit-config.yaml

@@ -32,7 +32,7 @@ repos:
       args: [--markdown-linebreak-ext=md]
 
   - repo: https://github.com/PyCQA/isort
-    rev: 6.0.1
+    rev: 9.0.0a3
     hooks:
     - id: isort
       args:
@@ -40,21 +40,21 @@ repos:
       - --filter-files
       - --skip-gitignore
 
-  - repo: https://github.com/psf/black
-    rev: 25.1.0
+  - repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 26.3.1
     hooks:
     - id: black
       args: [--line-length=79]
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.8.6
+    rev: 1.9.4
     hooks:
     - id: bandit
       args: ["-r"]
       files: ^tripper/.*$
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.17.1
+    rev: v1.20.2
     hooks:
     - id: mypy
       exclude: ^tests/.*$
@@ -64,11 +64,14 @@ repos:
         - "pydantic"
 
   - repo: https://github.com/SINTEF/ci-cd
-    rev: v2.9.2
+    rev: v2.10.0
     hooks:
     - id: docs-api-reference
       args:
       - --package-dir=tripper
+      - --unwanted-folder=__pycache__
+      - --unwanted-folder=context
+      - --unwanted-folder=old
     - id: docs-landing-page
     # - id: update-pyproject
 

{tripper-0.4.3 → tripper-0.5.2}/CHANGELOG.md

@@ -1,5 +1,118 @@
 # Changelog
 
+## [v0.5.2](https://github.com/EMMC-ASBL/tripper/tree/v0.5.2) (2026-05-11)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.5.1...v0.5.2)
+
+**Merged pull requests:**
+
+- Do not fail when wikidata stops access [\#544](https://github.com/EMMC-ASBL/tripper/pull/544) ([francescalb](https://github.com/francescalb))
+
+## [v0.5.1](https://github.com/EMMC-ASBL/tripper/tree/v0.5.1) (2026-04-29)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.5.0...v0.5.1)
+
+**Closed issues:**
+
+- TableDoc - add semantics to content of braces prepended to the header [\#529](https://github.com/EMMC-ASBL/tripper/issues/529)
+- Restrictions on individuals [\#488](https://github.com/EMMC-ASBL/tripper/issues/488)
+- Improve description of classes [\#460](https://github.com/EMMC-ASBL/tripper/issues/460)
+- One prefix can now point to two different namespaces [\#452](https://github.com/EMMC-ASBL/tripper/issues/452)
+
+**Merged pull requests:**
+
+- Iri in restrictions are not treated correctly when parsed into ts [\#542](https://github.com/EMMC-ASBL/tripper/pull/542) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#541](https://github.com/EMMC-ASBL/tripper/pull/541) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Do not infer restrictions on annotation properties [\#540](https://github.com/EMMC-ASBL/tripper/pull/540) ([francescalb](https://github.com/francescalb))
+- Added parsing of excel and semantics to header braces in tabledoc [\#539](https://github.com/EMMC-ASBL/tripper/pull/539) ([jesper-friis](https://github.com/jesper-friis))
+- Avoid injecting default context [\#538](https://github.com/EMMC-ASBL/tripper/pull/538) ([jesper-friis](https://github.com/jesper-friis))
+- Add documentation on how to make sure that new classes exist in context [\#537](https://github.com/EMMC-ASBL/tripper/pull/537) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#528](https://github.com/EMMC-ASBL/tripper/pull/528) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Removed automatic detection of datamodel in tripper dataset [\#526](https://github.com/EMMC-ASBL/tripper/pull/526) ([francescalb](https://github.com/francescalb))
+- Changed prefix `accr:` to `rights:` [\#525](https://github.com/EMMC-ASBL/tripper/pull/525) ([jesper-friis](https://github.com/jesper-friis))
+- Fixed formatting of keywords [\#521](https://github.com/EMMC-ASBL/tripper/pull/521) ([jesper-friis](https://github.com/jesper-friis))
+- Made altLabel and label language strings [\#519](https://github.com/EMMC-ASBL/tripper/pull/519) ([jesper-friis](https://github.com/jesper-friis))
+- Made test\_backends\_sparql.py slightly more robust [\#518](https://github.com/EMMC-ASBL/tripper/pull/518) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#517](https://github.com/EMMC-ASBL/tripper/pull/517) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Corrected infering name from iri. [\#516](https://github.com/EMMC-ASBL/tripper/pull/516) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#515](https://github.com/EMMC-ASBL/tripper/pull/515) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Individual restrictions [\#514](https://github.com/EMMC-ASBL/tripper/pull/514) ([jesper-friis](https://github.com/jesper-friis))
+- Keywords with context input [\#513](https://github.com/EMMC-ASBL/tripper/pull/513) ([jesper-friis](https://github.com/jesper-friis))
+- Restrictions to iris [\#512](https://github.com/EMMC-ASBL/tripper/pull/512) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#511](https://github.com/EMMC-ASBL/tripper/pull/511) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added support for multiple labels in keywords [\#508](https://github.com/EMMC-ASBL/tripper/pull/508) ([jesper-friis](https://github.com/jesper-friis))
+- Make TableDoc.save return the saved JSON-LD [\#507](https://github.com/EMMC-ASBL/tripper/pull/507) ([jesper-friis](https://github.com/jesper-friis))
+- Improved error message when missing prefix [\#506](https://github.com/EMMC-ASBL/tripper/pull/506) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#505](https://github.com/EMMC-ASBL/tripper/pull/505) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Changed sxd:date to xsd:dateTime in keywords [\#504](https://github.com/EMMC-ASBL/tripper/pull/504) ([jesper-friis](https://github.com/jesper-friis))
+- Restrictions on individuals [\#503](https://github.com/EMMC-ASBL/tripper/pull/503) ([jesper-friis](https://github.com/jesper-friis))
+- Correct rdf serialisation [\#502](https://github.com/EMMC-ASBL/tripper/pull/502) ([jesper-friis](https://github.com/jesper-friis))
+- Skip tests depending on dlite if dlite is not available [\#501](https://github.com/EMMC-ASBL/tripper/pull/501) ([jesper-friis](https://github.com/jesper-friis))
+- Removed unnecessary warning [\#500](https://github.com/EMMC-ASBL/tripper/pull/500) ([jesper-friis](https://github.com/jesper-friis))
+- Update jsonld to rdf [\#499](https://github.com/EMMC-ASBL/tripper/pull/499) ([francescalb](https://github.com/francescalb))
+- context is in many places forced to use default even when this is not desired [\#498](https://github.com/EMMC-ASBL/tripper/pull/498) ([francescalb](https://github.com/francescalb))
+- Annotation mappings for generated keywords  [\#497](https://github.com/EMMC-ASBL/tripper/pull/497) ([jesper-friis](https://github.com/jesper-friis))
+- Added --set-prefix option to keywords [\#496](https://github.com/EMMC-ASBL/tripper/pull/496) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#495](https://github.com/EMMC-ASBL/tripper/pull/495) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Fixed use of deprecated `yamlfile` argument to get\_keywords\(\) [\#494](https://github.com/EMMC-ASBL/tripper/pull/494) ([jesper-friis](https://github.com/jesper-friis))
+- Added prefix argument to keywords tool [\#492](https://github.com/EMMC-ASBL/tripper/pull/492) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#489](https://github.com/EMMC-ASBL/tripper/pull/489) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- \[pre-commit.ci\] pre-commit autoupdate [\#487](https://github.com/EMMC-ASBL/tripper/pull/487) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added reverse mapping to Namespace objects using the \_\_call\_\_\(\) method. [\#483](https://github.com/EMMC-ASBL/tripper/pull/483) ([jesper-friis](https://github.com/jesper-friis))
+- Added --redefine option to datadoc tool and corrected Keywords.\_keywords\_list\(\) method [\#482](https://github.com/EMMC-ASBL/tripper/pull/482) ([jesper-friis](https://github.com/jesper-friis))
+- Update keywords for manufactured product [\#481](https://github.com/EMMC-ASBL/tripper/pull/481) ([jesper-friis](https://github.com/jesper-friis))
+- 460 improve description of classes [\#479](https://github.com/EMMC-ASBL/tripper/pull/479) ([jesper-friis](https://github.com/jesper-friis))
+- Restore license [\#478](https://github.com/EMMC-ASBL/tripper/pull/478) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#477](https://github.com/EMMC-ASBL/tripper/pull/477) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Allow to filter generated markdown documentation on namespaces [\#476](https://github.com/EMMC-ASBL/tripper/pull/476) ([jesper-friis](https://github.com/jesper-friis))
+- Speedup [\#474](https://github.com/EMMC-ASBL/tripper/pull/474) ([jesper-friis](https://github.com/jesper-friis))
+- Make it possible to duplicate nested table headers [\#467](https://github.com/EMMC-ASBL/tripper/pull/467) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.5.0](https://github.com/EMMC-ASBL/tripper/tree/v0.5.0) (2025-11-22)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.3...v0.5.0)
+
+**Closed issues:**
+
+- Add functions for storing/loading namespace prefixes and URIs to/from the KB [\#441](https://github.com/EMMC-ASBL/tripper/issues/441)
+- Several tests are never run because of error in importsatetemtn fpr pyld [\#427](https://github.com/EMMC-ASBL/tripper/issues/427)
+- Fix the safety workflow by creating a Safety account and add a key to the workflow [\#423](https://github.com/EMMC-ASBL/tripper/issues/423)
+- Add methods to the Keywords class for adding new prefixes [\#422](https://github.com/EMMC-ASBL/tripper/issues/422)
+- Why is the test wit the ontopy backend skipped? [\#334](https://github.com/EMMC-ASBL/tripper/issues/334)
+
+**Merged pull requests:**
+
+- Fixed some bugs in Keywords  [\#473](https://github.com/EMMC-ASBL/tripper/pull/473) ([jesper-friis](https://github.com/jesper-friis))
+- Added missing keywords [\#470](https://github.com/EMMC-ASBL/tripper/pull/470) ([jesper-friis](https://github.com/jesper-friis))
+- Update keywords [\#469](https://github.com/EMMC-ASBL/tripper/pull/469) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#468](https://github.com/EMMC-ASBL/tripper/pull/468) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Remove default type for TableDoc [\#466](https://github.com/EMMC-ASBL/tripper/pull/466) ([jesper-friis](https://github.com/jesper-friis))
+- Allow keyword redefinition [\#465](https://github.com/EMMC-ASBL/tripper/pull/465) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#464](https://github.com/EMMC-ASBL/tripper/pull/464) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Improved error message and fixed minor issue when reading data from PINK. [\#463](https://github.com/EMMC-ASBL/tripper/pull/463) ([jesper-friis](https://github.com/jesper-friis))
+- Ensure that SPARQL queries with the rdflib backend behaves similar to sparqlwrapper [\#456](https://github.com/EMMC-ASBL/tripper/pull/456) ([jesper-friis](https://github.com/jesper-friis))
+- Changed `check_url` to default to `base_iri` [\#455](https://github.com/EMMC-ASBL/tripper/pull/455) ([jesper-friis](https://github.com/jesper-friis))
+- Fixed some issues with sparql backend [\#453](https://github.com/EMMC-ASBL/tripper/pull/453) ([jesper-friis](https://github.com/jesper-friis))
+- Generate keywords file [\#451](https://github.com/EMMC-ASBL/tripper/pull/451) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#450](https://github.com/EMMC-ASBL/tripper/pull/450) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added keyring tip [\#449](https://github.com/EMMC-ASBL/tripper/pull/449) ([jesper-friis](https://github.com/jesper-friis))
+- Fix deprecation warnings [\#448](https://github.com/EMMC-ASBL/tripper/pull/448) ([jesper-friis](https://github.com/jesper-friis))
+- Test against latest Python 3.14 instead of release candidate rc2 [\#447](https://github.com/EMMC-ASBL/tripper/pull/447) ([jesper-friis](https://github.com/jesper-friis))
+- Restore formatting [\#446](https://github.com/EMMC-ASBL/tripper/pull/446) ([jesper-friis](https://github.com/jesper-friis))
+- Fix formatting2 [\#445](https://github.com/EMMC-ASBL/tripper/pull/445) ([jesper-friis](https://github.com/jesper-friis))
+- Store prefixes to triplestore [\#443](https://github.com/EMMC-ASBL/tripper/pull/443) ([jesper-friis](https://github.com/jesper-friis))
+- Clean up keywords [\#442](https://github.com/EMMC-ASBL/tripper/pull/442) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#439](https://github.com/EMMC-ASBL/tripper/pull/439) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added available\(\) method and check\_url to argument to Triplestore [\#437](https://github.com/EMMC-ASBL/tripper/pull/437) ([jesper-friis](https://github.com/jesper-friis))
+- Added substitute\_query\(\) function [\#434](https://github.com/EMMC-ASBL/tripper/pull/434) ([jesper-friis](https://github.com/jesper-friis))
+- Fixed minor bugs in keywords.py [\#432](https://github.com/EMMC-ASBL/tripper/pull/432) ([jesper-friis](https://github.com/jesper-friis))
+- Fix linting warnings for bound prefixes [\#431](https://github.com/EMMC-ASBL/tripper/pull/431) ([nameloCmaS](https://github.com/nameloCmaS))
+- Corrected importorskip for PyLD \(corrected to pyld\) [\#428](https://github.com/EMMC-ASBL/tripper/pull/428) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#426](https://github.com/EMMC-ASBL/tripper/pull/426) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added add\_prefix\(\) method to keywords module. [\#424](https://github.com/EMMC-ASBL/tripper/pull/424) ([jesper-friis](https://github.com/jesper-friis))
+- Changed pypi status to production [\#418](https://github.com/EMMC-ASBL/tripper/pull/418) ([jesper-friis](https://github.com/jesper-friis))
+- Updated figure with basic relations [\#417](https://github.com/EMMC-ASBL/tripper/pull/417) ([jesper-friis](https://github.com/jesper-friis))
+
 ## [v0.4.3](https://github.com/EMMC-ASBL/tripper/tree/v0.4.3) (2025-08-19)
 
 [Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.2...v0.4.3)

{tripper-0.4.3 → tripper-0.5.2}/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022-2025 SINTEF
+Copyright (c) 2022-2026 SINTEF
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

{tripper-0.4.3 → tripper-0.5.2}/PKG-INFO

@@ -1,12 +1,12 @@
 Metadata-Version: 2.4
 Name: tripper
-Version: 0.4.3
+Version: 0.5.2
 Summary: A triplestore wrapper for Python.
 Keywords: triplestore,ontology,RDF
 Author-email: SINTEF <TEAM4.0@sintef.no>
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
-Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Development Status :: 5 - Production/Stable
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.8
@@ -21,17 +21,19 @@ Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
 License-File: LICENSE
 Requires-Dist: typing-extensions>=4.7.0,<4.13.1; python_version < '3.9'
-Requires-Dist: dlite-python>=0.5.27 ; extra == "backends" and ( python_version<='3.13')
-Requires-Dist: emmontopy>=0.5.0,<0.7.1 ; extra == "backends" and ( python_version<'3.13')
+Requires-Dist: dlite-python>=0.5.27 ; extra == "backends"
+Requires-Dist: emmontopy>=0.5.0,<=0.8.1 ; extra == "backends"
 Requires-Dist: graphviz>=0.20.1,<0.20.2 ; extra == "backends"
 Requires-Dist: numpy<2.1.0 ; extra == "backends" and ( python_version=='3.13')
 Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "backends"
 Requires-Dist: tripper[mappings] ; extra == "datadoc"
-Requires-Dist: PyLD>=2.0.0,<2.0.5 ; extra == "datadoc" and ( python_version<='3.13')
+Requires-Dist: keyring>=22.0.0,<25.6.1 ; extra == "datadoc"
+Requires-Dist: PyLD>=2.0.0,<2.0.5 ; extra == "datadoc"
 Requires-Dist: PyYaml>=3.0.0,<6.0.3 ; extra == "datadoc"
 Requires-Dist: requests>=2.0.0,<3.4.1 ; extra == "datadoc"
 Requires-Dist: sparqlwrapper>=2.0.0,<2.0.1 ; extra == "datadoc"
 Requires-Dist: tripper[pre-commit, docs] ; extra == "dev"
+Requires-Dist: virtualenvwrapper>=4.0.0 ; extra == "dev"
 Requires-Dist: tripper[testing] ; extra == "docs"
 Requires-Dist: mike==2.1.3 ; extra == "docs"
 Requires-Dist: mkdocs==1.6.1 ; extra == "docs"
@@ -50,7 +52,7 @@ Requires-Dist: pytest-cov==5.0.0 ; extra == "testing-core" and ( python_version<
 Requires-Dist: pytest-cov==6.0.0 ; extra == "testing-core" and ( python_version>='3.9')
 Requires-Dist: pint>=0.21.1,<0.26 ; extra == "units" and ( python_version<'3.9')
 Requires-Dist: pint>=0.24.1,<0.26 ; extra == "units" and ( python_version>='3.9')
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "units"
+Requires-Dist: rdflib>=6.3.0,<=7.6.0 ; extra == "units"
 Project-URL: Changelog, https://github.com/EMMC-ASBL/tripper/blob/master/CHANGELOG.md
 Project-URL: Documentation, https://EMMC-ASBL.github.io/tripper
 Project-URL: Home, https://github.com/EMMC-ASBL/tripper
@@ -71,7 +73,7 @@ Provides-Extra: units
 
 [![PyPI](https://img.shields.io/pypi/v/tripper?logo=pypi)](https://pypi.org/project/tripper)
 [![Documentation](https://img.shields.io/badge/documentation-informational?logo=github)](https://emmc-asbl.github.io/tripper/latest/)
-[![CI tests](https://github.com/EMMC-ASBL/tripper/workflows/CI%20-%20Tests/badge.svg)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml?query=branch%3Amaster)
+[![CI Tests](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml/badge.svg?branch=master)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml)
 [![DOI](https://zenodo.org/badge/547162834.svg)](https://zenodo.org/badge/latestdoi/547162834)
 
 *Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends*

{tripper-0.4.3 → tripper-0.5.2}/README.md

@@ -2,7 +2,7 @@
 
 [![PyPI](https://img.shields.io/pypi/v/tripper?logo=pypi)](https://pypi.org/project/tripper)
 [![Documentation](https://img.shields.io/badge/documentation-informational?logo=github)](https://emmc-asbl.github.io/tripper/latest/)
-[![CI tests](https://github.com/EMMC-ASBL/tripper/workflows/CI%20-%20Tests/badge.svg)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml?query=branch%3Amaster)
+[![CI Tests](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml/badge.svg?branch=master)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml)
 [![DOI](https://zenodo.org/badge/547162834.svg)](https://zenodo.org/badge/latestdoi/547162834)
 
 *Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends*

tripper-0.5.2/docs/api_reference/datadoc/prefixes.md

@@ -0,0 +1,3 @@
+# prefixes
+
+::: tripper.datadoc.prefixes

tripper-0.5.2/docs/api_reference/datadoc/utils.md

@@ -0,0 +1,3 @@
+# utils
+
+::: tripper.datadoc.utils

{tripper-0.4.3 → tripper-0.5.2}/docs/datadoc/customisation.md

@@ -81,9 +81,51 @@ In your ontology you may define `fromBatch` as a object property with IRI: http:
 Here the special value "@id" for the "@type" means that the value of `fromBatch` must be an IRI.
 
 
+Creating a context with keywords from an ontology
+-------------------------------------------------
+Creating a context with keywords manually can be strenuous and is prone to human mistakes.
+It is therefore advisable to only use one source of truth, namely the ontology.
+
+The context can be generated from a triplestore with the ontology with the Keywords class:
+
+```python
+from tripper import Triplestore
+from tripper.datadoc import get_keywords
+
+ts = Triplestore('rdflib')
+
+ts.parse(
+    'https://raw.githubusercontent.com/EMMC-ASBL/tripper/refs/heads/master/tests/ontologies/family.ttl',
+    format='turtle',
+)
+
+kw =  get_keywords() # create an Keywords instance populated with the default keywords (ddoc:datadoc)
+# Before loading the keywords file it is required that all namespaces have a prefix.
+# The family namespace does not have prefix by defualt and it must be added:
+kw.add_prefix('fam', 'http://onto-ns.com/ontologies/examples/family#')
+
+# We can now load the ontology into the keywords
+kw.load_rdf(ts, redefine='skip') # keywords that are already defined are skipped
+# or
+lw.load_rdf(ts, redefine='allow') # keywords that are already defined are redefined
+
+```
+
+
+Note that there are a few considerations when generating a context from an ontology:
+
+First of all, labels that are the same as predefined keywords must be handled with care.
+The default behaviour is that if this is attempted, an error is raised (`redefine = raise`).
+This choice have been made to ensure that redefining predefined keywords is a conscious decision.
+In order to redefine an existing keyword, the argument `redefine` of the `load_rdf()` method must be set to `allow`.
+A warning will be emitted for each keyword that is redefined.
+In order to generate keywords from an ontology without redefining existing keywords, the `redefine` argument can be set to `skip`, in which case existing keywords are left unchanged and a warning is emitted for each new keyword that is skipped to the advantage of the existing keyword.
+
+
+
 Providing a custom context
 --------------------------
-Custom context can be provided for all the interfaces described in the section [Documenting a resource].
+A custom context with defined keywords can be provided for all the interfaces described in the section [Documenting a resource].
 
 ### Python dict
 Both for the single-resource and multi-resource dicts, you can add a `"@context"` key to the dict who's value is
@@ -229,26 +271,89 @@ The `__init__()` method of the [TableDoc] class takes a `context` argument with
 The value of the `context` argument is the same as for the `@context` key of a [Python dict].
 
 
-User-defined resource types
----------------------------
-TODO
+Multi-table workflows
+---------------------
+When documenting a knowledge base from multiple CSV (or YAML) tables that cross-reference each other's classes — for example, a `classes.csv` that defines domain-specific dataset types that are referenced as `hasInput`/`hasOutput` values in a `computations.csv` — you must explicitly enrich the shared context between parses.
+
+### Why this matters
+
+Tripper determines whether an object-property value should become an `owl:Restriction` (instead of a plain triple) by checking whether the referenced IRI is a known class in the current context.
+When two tables are parsed independently (even with the same `context` object), classes defined in the first table are **not** automatically visible to `infer_restriction_types()` when it processes the second table.
+
+The consequence is **silent**: for scalar string values a `"value"` restriction is still inferred, but for **list-valued** object properties (e.g. a list of two `hasInput` classes) **no restriction type is inferred at all**, and the property ends up as a plain triple rather than an `owl:Restriction` node.
+
+### Solution: call `update_context()` between parses
+
+After parsing the table that defines your classes, call [`update_context()`][update_context()] with its output before parsing tables that reference those classes:
+
 
-Extending the list of predefined [resource types] it not implemented yet.
+```python
+from tripper.datadoc import get_context, TableDoc
+from tripper.datadoc.dataset import update_context
+from tripper import Triplestore
+
+context = get_context("https://example.org/context/", theme=None)
+prefixes = {"myns": "https://example.org/myns/"}
+
+ts = Triplestore("rdflib")
+
+# 1. Parse and store the table that defines classes
+classes_doc = TableDoc.parse_csv("classes.csv", context=context, prefixes=prefixes)
+classes_doc.save(ts)
+
+# 2. Register the newly-parsed classes in the shared context
+update_context(classes_doc.asdicts(), context)
+
+# 3. Now parse tables and store that reference those classes — restrictions will be inferred correctly
+resources_doc = TableDoc.parse_csv("resources.csv", context=context, prefixes=prefixes)
+resources_doc.save(ts)
+
+```
+
+This pattern applies whenever:
+
+- One table defines classes (rows with `@type: owl:Class` or `subClassOf`).
+- Another table documents resources whose object properties point to those classes.
+- You want those properties to be represented as `owl:Restriction` nodes in the output graph.
+
+If you chain more than two tables, repeat the `update_context()` call after each parse.
+
+### Easier solution: create one dict before populating the triplestore
+
+Technically, it is often easier to create one big dict with all the resources from all tables, and then call [store()] once on that dict. This way, all classes are visible to `infer_restriction_types()` when it processes the whole dict.
+
+```python
+from tripper.datadoc import get_context, TableDoc
+from tripper.datadoc.dataset import store
+
+context = get_context("https://example.org/context/", theme=None)
+prefixes = {"myns": "https://example.org/myns/"}
+
+# 1. Parse the table that defines classes
+classes_doc = TableDoc.parse_csv("classes.csv", context=context, prefixes=prefixes)
+
+# 2. Parse the table that defines resources that reference those classes
+resources_doc = TableDoc.parse_csv("resources.csv", context=context, prefixes=prefixes)
+
+# 3. Create one big dict with all resources from all tables
+dicts = classes_doc.asdicts() + resources_doc.asdicts()
+
+# 4. Store the big dict in the triplestore
+store(ts, dicts, context=context)
+```
 
-Since JSON-LD is not designed for categorisation, new resource types should not be added in a custom JSON-LD context.
-Instead, the list of available resource types should be stored and retrieved from the knowledge base.
 
 
 
 [With custom context]: #with-custom-context
 [User-defined keywords]: #user-defined-keywords
 [Python dict]: #python-dict
-[resource types]: introduction.md#resource-types
 [Documenting a resource]: documenting-a-resource.md
 [Search for and fetching resources]: fetching-resources-from-a-triplestore.md
 [predefined prefixes]: prefixes.md
 [predefined keywords]: keywords.md
 [default context]: https://raw.githubusercontent.com/EMMC-ASBL/tripper/refs/heads/master/tripper/context/0.2/context.json
+[update_context()]: ../api_reference/datadoc/dataset.md#tripper.datadoc.dataset.update_context
 [store()]: ../api_reference/datadoc/dataset.md#tripper.datadoc.dataset.store
 [told()]: ../api_reference/datadoc/dataset.md#tripper.datadoc.dataset.told
 [save_datadoc()]: ../api_reference/datadoc/dataset.md#tripper.datadoc.dataset.save_datadoc