tripper 0.4.0__tar.gz → 0.4.3__tar.gz

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/cd_release.yml

@@ -8,7 +8,7 @@ on:
 jobs:
   build:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.9.2
     if: github.repository == 'EMMC-ASBL/tripper' && startsWith(github.ref, 'refs/tags/v')
     with:
       # General
@@ -20,7 +20,7 @@ jobs:
       # Build package
       python_package: true
       package_dirs: tripper
-      python_version_build: "3.9"
+      python_version_build: "3.11"
       build_libs: "flit"
       build_cmd: "flit build"
       build_dir: "dist"
@@ -29,7 +29,7 @@ jobs:
 
       # Build & publish documentation
       update_docs: true
-      python_version_docs: "3.9"
+      python_version_docs: "3.11"
       doc_extras: "[docs]"
       changelog_exclude_labels: "skip_changelog,duplicate,question,invalid,wontfix"
       docs_framework: mkdocs

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/ci_automerge_dependency_prs.yml

@@ -7,7 +7,7 @@ on:
 jobs:
   update-dependencies-branch:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL' && ( ( startsWith(github.event.pull_request.head.ref, 'dependabot/') && github.actor == 'dependabot[bot]' ) || ( github.event.pull_request.head.ref == 'ci/update-pyproject' && github.actor == 'TEAM4-0' ) )
     secrets:
       PAT: ${{ secrets.RELEASE_PAT }}

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/ci_cd_updated_main.yml

@@ -7,7 +7,7 @@ on:
 jobs:
   update-deps-branch-and-docs:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       # General
@@ -24,7 +24,7 @@ jobs:
       update_python_api_ref: true
       package_dirs: tripper
       update_docs_landing_page: true
-      python_version: "3.9"
+      python_version: "3.12"
       doc_extras: "[docs]"
       changelog_exclude_labels: "skip_changelog,duplicate,question,invalid,wontfix"
       docs_framework: mkdocs

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/ci_check_dependencies.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   check-dependencies:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       git_username: "TEAM 4.0[bot]"

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/ci_tests.yml

@@ -10,16 +10,17 @@ on:
 jobs:
   basic-tests:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.9.2
     with:
       ## General settings:
       install_extras: "[dev]"
 
       ## pre-commit
       run_pre-commit: false
+      skip_pre-commit_hooks: "generate-context-and-doc"
 
       ## pylint & safety
-      python_version_pylint_safety: "3.9"
+      python_version_pylint_safety: "3.11"
 
       # pylint-specific settings
       run_pylint: true
@@ -28,32 +29,17 @@ jobs:
         --rcfile=pyproject.toml --disable=import-outside-toplevel,redefined-outer-name tests
 
       # safety-specific settings
-      run_safety: true
-      # 48547: RDFLib vulnerability: https://pyup.io/vulnerabilities/PVE-2022-48547/48547/
-      # 44715-44717: NumPy vulnerabilities:
-      #  https://pyup.io/vulnerabilities/CVE-2021-41495/44715/
-      #  https://pyup.io/vulnerabilities/CVE-2021-41496/44716/
-      #  https://pyup.io/vulnerabilities/CVE-2021-34141/44717/
-      # 70612: Jinja2 vulnerability. Only used as subdependency for mkdocs++ in tripper.
-      #  https://data.safetycli.com/v/70612/97c/
-      #  https://data.safetycli.com/v/72715/97c/   # update to mkdocs>=9.5.32
-      safety_options: |
-        --ignore=48547
-        --ignore=44715
-        --ignore=44716
-        --ignore=44717
-        --ignore=70612
-        --ignore=72715
+      run_safety: false
 
       ## Build package
       run_build_package: true
-      python_version_package: "3.9"
+      python_version_package: "3.11"
       build_libs: flit
       build_cmd: flit build
 
       ## Build documentation
       run_build_docs: true
-      python_version_docs: "3.9"
+      python_version_docs: "3.11"
       warnings_as_errors: true
       use_mkdocs: true
 
@@ -62,13 +48,38 @@ jobs:
       update_docs_landing_page: true
       package_dirs: tripper
 
+  safety:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@main
+      - name: Run Safety CLI to check for vulnerabilities
+        uses: pyupio/safety-action@v1
+        with:
+          api-key: ${{ secrets.SAFETY_API_KEY }}
+          args: --detailed-output # To always see detailed output from this action
+
   pytest:
     runs-on: ubuntu-latest
 
+
+    services:
+      fuseki:
+        image: stain/jena-fuseki
+        env:
+          ADMIN_PASSWORD: admin0
+          FUSEKI_DATASET_1: test_repo
+        ports:
+          - 3030:3030
+        options: >-
+          --health-cmd "curl -f http://localhost:3030 || exit 1"
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14.0-rc.2"]
 
     steps:
     - name: Checkout tripper
@@ -93,7 +104,7 @@ jobs:
       run: pytest -vvv --cov-report=xml --doctest-modules
 
     - name: Upload coverage to Codecov
-      if: matrix.python-version == '3.9' && github.repository == 'EMMC-ASBL/tripper'
+      if: matrix.python-version == '3.11' && github.repository == 'EMMC-ASBL/tripper'
       uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -107,7 +118,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14.0-rc.2"]
 
     steps:
     - name: Checkout tripper

{tripper-0.4.0 → tripper-0.4.3}/.github/workflows/ci_update_dependencies.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   create-collected-pr:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.9.0
+    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       git_username: "TEAM 4.0[bot]"

tripper-0.4.3/.hooks/generate-context-and-doc.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+# Enter repository root directory
+HERE="$(cd "$(dirname "$0")" && pwd)"
+cd "$HERE"/..
+
+# Generate JSON-LD context and keyword documentation
+python tripper/datadoc/keywords.py \
+    --context=tripper/context/0.3/context.json \
+    --keywords=docs/datadoc/keywords.md \
+    --prefixes=docs/datadoc/prefixes.md
+
+python tripper/datadoc/keywords.py \
+    --context=tripper/context/process/0.1/context.json \
+    --keywords=docs/datadoc/keywords-process.md \
+    --prefixes=docs/datadoc/prefixes-process.md
+
+
+# Don't crash pre-commit in case the above fails on GitHub
+exit 0

tripper-0.4.3/.hooks/markdown-doctest.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+
+# Enter repository root directory
+HERE="$(cd "$(dirname "$0")" && pwd)"
+cd "$HERE"/..
+
+# Run doctest on all markdown files in the docs/ directory
+find docs -name '*.md' | xargs -n1 python -m doctest

{tripper-0.4.0 → tripper-0.4.3}/.pre-commit-config.yaml

@@ -19,7 +19,7 @@ ci:
 # hooks
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
     - id: end-of-file-fixer
       exclude: ^.*\.(svg)$
@@ -32,7 +32,7 @@ repos:
       args: [--markdown-linebreak-ext=md]
 
   - repo: https://github.com/PyCQA/isort
-    rev: 6.0.0
+    rev: 6.0.1
     hooks:
     - id: isort
       args:
@@ -47,31 +47,49 @@ repos:
       args: [--line-length=79]
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.8.2
+    rev: 1.8.6
     hooks:
     - id: bandit
       args: ["-r"]
       files: ^tripper/.*$
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.14.1
+    rev: v1.17.1
     hooks:
     - id: mypy
       exclude: ^tests/.*$
       additional_dependencies:
         - "types-requests"
+        - "types-pyyaml"
         - "pydantic"
 
   - repo: https://github.com/SINTEF/ci-cd
-    rev: v2.9.0
+    rev: v2.9.2
     hooks:
     - id: docs-api-reference
       args:
       - --package-dir=tripper
     - id: docs-landing-page
+    # - id: update-pyproject
 
   - repo: local
     hooks:
+    - id: generate-context-and-doc
+      name: Generate JSON-LD context and documentation
+      entry: .hooks/generate-context-and-doc.sh
+      language: script
+      pass_filenames: false
+      stages: ["pre-commit"]
+
+    # The doctests are too slow for running them in pre-commit.
+    # Run it as a test instead.
+    # - id: markdown-doctest
+    #   name: Run doctest on markdown documentation
+    #   entry: .hooks/markdown-doctest.sh
+    #   language: script
+    #   pass_filenames: false
+    #   stages: ["pre-commit"]
+
     - id: pylint
       name: pylint
       entry: pylint
@@ -82,6 +100,7 @@ repos:
       require_serial: true
       files: ^.*$
       exclude: ^tests/.*$
+
     - id: pylint-tests
       name: pylint - tests
       entry: pylint

{tripper-0.4.0 → tripper-0.4.3}/CHANGELOG.md

@@ -1,5 +1,110 @@
 # Changelog
 
+## [v0.4.3](https://github.com/EMMC-ASBL/tripper/tree/v0.4.3) (2025-08-19)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.2...v0.4.3)
+
+**Closed issues:**
+
+- inconsistent usage when filtering searches [\#396](https://github.com/EMMC-ASBL/tripper/issues/396)
+- correct criterias to criteria [\#392](https://github.com/EMMC-ASBL/tripper/issues/392)
+- Add `hasCurator` and `hasCurationDate` properties to resources [\#390](https://github.com/EMMC-ASBL/tripper/issues/390)
+- Support for documenting not \(yet\) existing resources [\#369](https://github.com/EMMC-ASBL/tripper/issues/369)
+- Make the generated keywords documentation look better [\#365](https://github.com/EMMC-ASBL/tripper/issues/365)
+- Speed up tripper.dataset.save\_data\(\) [\#337](https://github.com/EMMC-ASBL/tripper/issues/337)
+- Example in documentation of  search\_iris iw wrong. [\#323](https://github.com/EMMC-ASBL/tripper/issues/323)
+- get\_jsonld\_context does not support PosixPath [\#322](https://github.com/EMMC-ASBL/tripper/issues/322)
+- Set up a triplestore on the PhysMet Portal [\#315](https://github.com/EMMC-ASBL/tripper/issues/315)
+- Make converting a large table of datasets to RDF faster [\#305](https://github.com/EMMC-ASBL/tripper/issues/305)
+- Ensure dataset is TEM schema compliant [\#293](https://github.com/EMMC-ASBL/tripper/issues/293)
+- Define schema for TEM dataset queries [\#292](https://github.com/EMMC-ASBL/tripper/issues/292)
+
+**Merged pull requests:**
+
+- Updated installation instructions on the readme page. [\#415](https://github.com/EMMC-ASBL/tripper/pull/415) ([jesper-friis](https://github.com/jesper-friis))
+- Add support for Python 3.14 [\#414](https://github.com/EMMC-ASBL/tripper/pull/414) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#412](https://github.com/EMMC-ASBL/tripper/pull/412) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Updated dataset figure [\#410](https://github.com/EMMC-ASBL/tripper/pull/410) ([jesper-friis](https://github.com/jesper-friis))
+- Include sparqlwrapper in dependencies for datadoc [\#409](https://github.com/EMMC-ASBL/tripper/pull/409) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#408](https://github.com/EMMC-ASBL/tripper/pull/408) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Updated figures [\#407](https://github.com/EMMC-ASBL/tripper/pull/407) ([jesper-friis](https://github.com/jesper-friis))
+- Date and time literals [\#406](https://github.com/EMMC-ASBL/tripper/pull/406) ([jesper-friis](https://github.com/jesper-friis))
+- Added keywords `hasCurator` and `hasCurationDate` [\#405](https://github.com/EMMC-ASBL/tripper/pull/405) ([jesper-friis](https://github.com/jesper-friis))
+- Build documentation with Python 3.12 [\#404](https://github.com/EMMC-ASBL/tripper/pull/404) ([jesper-friis](https://github.com/jesper-friis))
+- Skip running doctest on session.md if Fuseki is not running [\#403](https://github.com/EMMC-ASBL/tripper/pull/403) ([jesper-friis](https://github.com/jesper-friis))
+- Fix issue \#396 [\#401](https://github.com/EMMC-ASBL/tripper/pull/401) ([jesper-friis](https://github.com/jesper-friis))
+- Updated figure with basic relations [\#400](https://github.com/EMMC-ASBL/tripper/pull/400) ([jesper-friis](https://github.com/jesper-friis))
+- Added \_\_contains\_\_\(\) method to namespace [\#399](https://github.com/EMMC-ASBL/tripper/pull/399) ([jesper-friis](https://github.com/jesper-friis))
+- Run mkdocs with Python 3.13 instead of 3.9 [\#398](https://github.com/EMMC-ASBL/tripper/pull/398) ([jesper-friis](https://github.com/jesper-friis))
+- added a file about how to search and delete resources in the ts [\#397](https://github.com/EMMC-ASBL/tripper/pull/397) ([francescalb](https://github.com/francescalb))
+- Update using criteria in search [\#395](https://github.com/EMMC-ASBL/tripper/pull/395) ([francescalb](https://github.com/francescalb))
+- Keywords inverse [\#394](https://github.com/EMMC-ASBL/tripper/pull/394) ([jesper-friis](https://github.com/jesper-friis))
+- Keywords inverse [\#393](https://github.com/EMMC-ASBL/tripper/pull/393) ([jesper-friis](https://github.com/jesper-friis))
+- Added keywords for documenting characterisation processes [\#391](https://github.com/EMMC-ASBL/tripper/pull/391) ([jesper-friis](https://github.com/jesper-friis))
+- WIP: Update classes [\#388](https://github.com/EMMC-ASBL/tripper/pull/388) ([jesper-friis](https://github.com/jesper-friis))
+- Improved control when storing to the triplestore [\#387](https://github.com/EMMC-ASBL/tripper/pull/387) ([jesper-friis](https://github.com/jesper-friis))
+- Fix test\_markdown\_doctest [\#383](https://github.com/EMMC-ASBL/tripper/pull/383) ([jesper-friis](https://github.com/jesper-friis))
+- Added ureg.get\_quantity\(\) method to units module [\#381](https://github.com/EMMC-ASBL/tripper/pull/381) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.4.2](https://github.com/EMMC-ASBL/tripper/tree/v0.4.2) (2025-04-23)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.1...v0.4.2)
+
+**Merged pull requests:**
+
+- Development branch that merges loose ends together [\#380](https://github.com/EMMC-ASBL/tripper/pull/380) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.4.1](https://github.com/EMMC-ASBL/tripper/tree/v0.4.1) (2025-04-19)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.0...v0.4.1)
+
+**Closed issues:**
+
+- ts.remove does not work in sparqlwrapper. [\#350](https://github.com/EMMC-ASBL/tripper/issues/350)
+- exapand\_iri, documentation formatted wrongly. [\#348](https://github.com/EMMC-ASBL/tripper/issues/348)
+- Attrdict return non-expanded iris, is this correct? [\#341](https://github.com/EMMC-ASBL/tripper/issues/341)
+- The CONSTRUCT sparql query in \_load\_sparql used in load\_dict returns all datasets [\#336](https://github.com/EMMC-ASBL/tripper/issues/336)
+- Adding text in graphDB trough save\_datadoc is done incorrectly? [\#333](https://github.com/EMMC-ASBL/tripper/issues/333)
+- datadoc.dataset.\_load\_sparql uses a CONSTRUCT query, which is not implemented in the SPARQLWrapper [\#330](https://github.com/EMMC-ASBL/tripper/issues/330)
+- Include the JSON-LD context in the installed package [\#326](https://github.com/EMMC-ASBL/tripper/issues/326)
+- It is not possible to search for Literals in the graphdb backend [\#320](https://github.com/EMMC-ASBL/tripper/issues/320)
+- Validator for schema [\#294](https://github.com/EMMC-ASBL/tripper/issues/294)
+
+**Merged pull requests:**
+
+- Corrected DataSetvice to DataService [\#374](https://github.com/EMMC-ASBL/tripper/pull/374) ([francescalb](https://github.com/francescalb))
+- Fix typo in keywords documentation [\#373](https://github.com/EMMC-ASBL/tripper/pull/373) ([jesper-friis](https://github.com/jesper-friis))
+- Updated keywords documentation [\#371](https://github.com/EMMC-ASBL/tripper/pull/371) ([jesper-friis](https://github.com/jesper-friis))
+- Adding logos [\#368](https://github.com/EMMC-ASBL/tripper/pull/368) ([jesper-friis](https://github.com/jesper-friis))
+- Add resources \(classes\) to the JSON-LD context. [\#366](https://github.com/EMMC-ASBL/tripper/pull/366) ([jesper-friis](https://github.com/jesper-friis))
+- Added support for ASK and DESCRIBE queries in the sparqlwrapper backend [\#364](https://github.com/EMMC-ASBL/tripper/pull/364) ([jesper-friis](https://github.com/jesper-friis))
+- Improved formatting of keyword documentation table. [\#362](https://github.com/EMMC-ASBL/tripper/pull/362) ([jesper-friis](https://github.com/jesper-friis))
+- Test for the datadoc command-line tool [\#361](https://github.com/EMMC-ASBL/tripper/pull/361) ([jesper-friis](https://github.com/jesper-friis))
+- Fixed CONTEXT\_URL after branch 294-validator-for-schema was merged to master [\#359](https://github.com/EMMC-ASBL/tripper/pull/359) ([jesper-friis](https://github.com/jesper-friis))
+- Fix formatting [\#358](https://github.com/EMMC-ASBL/tripper/pull/358) ([jesper-friis](https://github.com/jesper-friis))
+- Added session [\#357](https://github.com/EMMC-ASBL/tripper/pull/357) ([jesper-friis](https://github.com/jesper-friis))
+- Added update\(\) method to sparqlwrapper backend [\#356](https://github.com/EMMC-ASBL/tripper/pull/356) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#355](https://github.com/EMMC-ASBL/tripper/pull/355) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- \[pre-commit.ci\] pre-commit autoupdate [\#353](https://github.com/EMMC-ASBL/tripper/pull/353) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Corrected sparqlquery for removing triples [\#351](https://github.com/EMMC-ASBL/tripper/pull/351) ([francescalb](https://github.com/francescalb))
+- Corrected formatting of example [\#349](https://github.com/EMMC-ASBL/tripper/pull/349) ([francescalb](https://github.com/francescalb))
+- Added test for Fuseki and fixed query to return TURTLE which works for both fuseki and graphdb [\#347](https://github.com/EMMC-ASBL/tripper/pull/347) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#346](https://github.com/EMMC-ASBL/tripper/pull/346) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Correct syntax [\#344](https://github.com/EMMC-ASBL/tripper/pull/344) ([jesper-friis](https://github.com/jesper-friis))
+- Correct syntax [\#343](https://github.com/EMMC-ASBL/tripper/pull/343) ([jesper-friis](https://github.com/jesper-friis))
+- Flb/expand iri in sparql query [\#340](https://github.com/EMMC-ASBL/tripper/pull/340) ([francescalb](https://github.com/francescalb))
+- disable pylint errors on too-many-positional-arguments [\#339](https://github.com/EMMC-ASBL/tripper/pull/339) ([francescalb](https://github.com/francescalb))
+- Fixed CONSTRUCT to return s and not o [\#338](https://github.com/EMMC-ASBL/tripper/pull/338) ([francescalb](https://github.com/francescalb))
+- Corrected literals in SELECT and CONSTRUCT queries in the sparqlwrapper backend [\#335](https://github.com/EMMC-ASBL/tripper/pull/335) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#332](https://github.com/EMMC-ASBL/tripper/pull/332) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added CONSTRUCT query to sparqlwrapper,  [\#331](https://github.com/EMMC-ASBL/tripper/pull/331) ([francescalb](https://github.com/francescalb))
+- Include context files in installation [\#328](https://github.com/EMMC-ASBL/tripper/pull/328) ([jesper-friis](https://github.com/jesper-friis))
+- Added PINK to contributing projects [\#327](https://github.com/EMMC-ASBL/tripper/pull/327) ([jesper-friis](https://github.com/jesper-friis))
+- Update dataset.py [\#325](https://github.com/EMMC-ASBL/tripper/pull/325) ([jesper-friis](https://github.com/jesper-friis))
+- Added units submodule for working with units and quantities defined in ontologies [\#324](https://github.com/EMMC-ASBL/tripper/pull/324) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#321](https://github.com/EMMC-ASBL/tripper/pull/321) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Schema validator [\#296](https://github.com/EMMC-ASBL/tripper/pull/296) ([jesper-friis](https://github.com/jesper-friis))
+
 ## [v0.4.0](https://github.com/EMMC-ASBL/tripper/tree/v0.4.0) (2025-02-10)
 
 [Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.3.4...v0.4.0)

{tripper-0.4.0 → tripper-0.4.3}/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022 SINTEF
+Copyright (c) 2022-2025 SINTEF
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

tripper-0.4.3/MANIFEST.in

@@ -0,0 +1 @@
+recursive-include tripper/context/**

{tripper-0.4.0 → tripper-0.4.3}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: tripper
-Version: 0.4.0
+Version: 0.4.3
 Summary: A triplestore wrapper for Python.
 Keywords: triplestore,ontology,RDF
 Author-email: SINTEF <TEAM4.0@sintef.no>
@@ -15,42 +15,49 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Environment :: Plugins
 Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
-Requires-Dist: typing-extensions>=4.7.0,<4.7.1; python_version<'3.9'
+License-File: LICENSE
+Requires-Dist: typing-extensions>=4.7.0,<4.13.1; python_version < '3.9'
+Requires-Dist: dlite-python>=0.5.27 ; extra == "backends" and ( python_version<='3.13')
+Requires-Dist: emmontopy>=0.5.0,<0.7.1 ; extra == "backends" and ( python_version<'3.13')
+Requires-Dist: graphviz>=0.20.1,<0.20.2 ; extra == "backends"
+Requires-Dist: numpy<2.1.0 ; extra == "backends" and ( python_version=='3.13')
+Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "backends"
 Requires-Dist: tripper[mappings] ; extra == "datadoc"
+Requires-Dist: PyLD>=2.0.0,<2.0.5 ; extra == "datadoc" and ( python_version<='3.13')
 Requires-Dist: PyYaml>=3.0.0,<6.0.3 ; extra == "datadoc"
 Requires-Dist: requests>=2.0.0,<3.4.1 ; extra == "datadoc"
+Requires-Dist: sparqlwrapper>=2.0.0,<2.0.1 ; extra == "datadoc"
 Requires-Dist: tripper[pre-commit, docs] ; extra == "dev"
 Requires-Dist: tripper[testing] ; extra == "docs"
 Requires-Dist: mike==2.1.3 ; extra == "docs"
 Requires-Dist: mkdocs==1.6.1 ; extra == "docs"
-Requires-Dist: mkdocs-autorefs==1.2.0 ; extra == "docs"
+Requires-Dist: mkdocs-autorefs==1.4.1 ; extra == "docs"
 Requires-Dist: mkdocs-awesome-pages-plugin==2.10.1 ; extra == "docs"
-Requires-Dist: mkdocs-material==9.5.49 ; extra == "docs"
+Requires-Dist: mkdocs-github-admonitions-plugin==0.0.3 ; extra == "docs"
+Requires-Dist: mkdocs-material==9.6.11 ; extra == "docs"
 Requires-Dist: mkdocstrings==0.27.0 ; extra == "docs"
 Requires-Dist: mkdocstrings-python-legacy==0.2.4 ; extra == "docs"
-Requires-Dist: pint>=0.21.1,<1 ; extra == "mappings" and ( python_version<'3.9')
-Requires-Dist: pint>=0.24,<1 ; extra == "mappings" and ( python_version>='3.9')
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "mappings"
+Requires-Dist: tripper[units] ; extra == "mappings"
 Requires-Dist: pre-commit==4.0.1 ; extra == "pre-commit"
-Requires-Dist: pylint==2.15.5 ; extra == "pre-commit"
-Requires-Dist: tripper[testing-core, mappings, datadoc] ; extra == "testing"
-Requires-Dist: dlite-python>=0.5.27 ; extra == "testing" and ( python_version>='3.8')
-Requires-Dist: emmontopy>=0.5.0,<0.7.1 ; extra == "testing" and ( python_version<'3.13')
-Requires-Dist: graphviz>=0.20.1,<0.20.2 ; extra == "testing"
-Requires-Dist: numpy<2.1.0 ; extra == "testing" and ( python_version>='3.13')
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "testing"
-Requires-Dist: sparqlwrapper>=2.0.0,<2.0.1 ; extra == "testing"
-Requires-Dist: pytest==7.4.4 ; extra == "testing-core"
-Requires-Dist: pytest-cov==4.1.0 ; extra == "testing-core"
+Requires-Dist: pylint==3.3.4 ; extra == "pre-commit" and ( python_version>='3.9')
+Requires-Dist: tripper[datadoc, backends, testing-core] ; extra == "testing"
+Requires-Dist: pytest==8.3.4 ; extra == "testing-core"
+Requires-Dist: pytest-cov==5.0.0 ; extra == "testing-core" and ( python_version<'3.9')
+Requires-Dist: pytest-cov==6.0.0 ; extra == "testing-core" and ( python_version>='3.9')
+Requires-Dist: pint>=0.21.1,<0.26 ; extra == "units" and ( python_version<'3.9')
+Requires-Dist: pint>=0.24.1,<0.26 ; extra == "units" and ( python_version>='3.9')
+Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "units"
 Project-URL: Changelog, https://github.com/EMMC-ASBL/tripper/blob/master/CHANGELOG.md
 Project-URL: Documentation, https://EMMC-ASBL.github.io/tripper
 Project-URL: Home, https://github.com/EMMC-ASBL/tripper
 Project-URL: Issue Tracker, https://github.com/EMMC-ASBL/tripper/issues
 Project-URL: Package, https://pypi.org/project/tripper
 Project-URL: Source, https://github.com/EMMC-ASBL/tripper
+Provides-Extra: backends
 Provides-Extra: datadoc
 Provides-Extra: dev
 Provides-Extra: docs
@@ -58,17 +65,20 @@ Provides-Extra: mappings
 Provides-Extra: pre-commit
 Provides-Extra: testing
 Provides-Extra: testing-core
+Provides-Extra: units
 
-Tripper
-=======
-*Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends.*
-
+<img src="docs/figs/tripper_logo.svg" alt="Tripper logo" align="right" width="96" height="96">
 
 [![PyPI](https://img.shields.io/pypi/v/tripper?logo=pypi)](https://pypi.org/project/tripper)
 [![Documentation](https://img.shields.io/badge/documentation-informational?logo=github)](https://emmc-asbl.github.io/tripper/latest/)
 [![CI tests](https://github.com/EMMC-ASBL/tripper/workflows/CI%20-%20Tests/badge.svg)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml?query=branch%3Amaster)
 [![DOI](https://zenodo.org/badge/547162834.svg)](https://zenodo.org/badge/latestdoi/547162834)
 
+*Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends*
+
+
+Tripper
+=======
 
 Getting started
 ---------------
@@ -85,10 +95,10 @@ It strives for simplicity and is modelled after [rdflib] (with a few simplificat
 In Tripper:
 
 * All IRIs are represented by Python strings.
-  Example: `"https://w3id.org/emmo#Metre"`
+  Example: `https://w3id.org/emmo#Metre`
 
-* Blank nodes are strings starting with "_:".
-  Example: `"_:bnode1"`
+* Blank nodes are strings starting with `_:`.
+  Example: `_:bnode1`
 
 * Literals are constructed with [`tripper.Literal`][Literal].
   Example: `tripper.Literal(3.14, datatype=XSD.float)`
@@ -104,6 +114,7 @@ Sub-packages
 Additional functionality beyond interfacing triplestore backends is provided by specialised sub-package:
 
 * [tripper.datadoc]: An API for data documentation.
+* [tripper.units]: Working with units and quantities defined in ontologies.
 * [tripper.mappings]: Traverse mappings stored in the triplestore and find possible mapping routes.
 * [tripper.convert]: Convert between RDF and other data representations.
 
@@ -128,20 +139,40 @@ Installation
 Tripper has by itself no dependencies outside the standard library, but the triplestore backends may have specific dependencies.
 
 
-The package can be installed from [PyPI] using `pip`:
+The package can be installed from [PyPI] using `pip`.
+A minimal installation can be done with
 
 ```shell
 pip install tripper
 ```
 
-In addition you would need to install the requirements for one or more of the backends listed in the table above.
-For mappings you would also need to install [Pint].
-For example:
+but typically, you would also like to install the requirements needed by the backends, the tripper sub-packages and extra features.
+The requirements for the backends are listed in the table above, while sub-packages and extra features are enabled by specifying one or more of the "extras" listed in the table below when installing Tripper.
+
+
+For example, the following command will install Tripper with the [tripper.datadoc] sub-package and the rdflib backend enabled:
 
 ```shell
-pip install rdflib pint
+pip install tripper[datadoc] rdflib
 ```
 
+Developers should install Tripper with the `dev` extras and enable [pre-commit]:
+
+```shell
+pip install tripper[dev]
+pre-commit install  # Enable pre-commit and installing hooks
+```
+
+
+| Extras   | Description of dependencies                                        | Implies          |
+|----------|--------------------------------------------------------------------|------------------|
+| units    | Required by the [tripper.units] sub-package.                       |                  |
+| mappings | Required by the [tripper.mappings] sub-package.                    | units            |
+| datadoc  | Required by the [tripper.datadoc] sub-package.                     | mappings         |
+| backends | Installs dependencies for all backends                             |                  |
+| testing  | For testing.                                                       | datadoc,backends |
+| docs     | For generation of documentation                                    | testing          |
+| dev      | For developers. Installs all dependencies, including [pre-commit]. | dev              |
 
 
 
@@ -163,6 +194,7 @@ We gratefully acknowledge the following projects for supporting the development
   - [VIPCOAT](https://www.vipcoat.eu/) (2021-2025) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 952903.
   - MEDIATE (2022-2025) that receives funding from the RCN, Norway; FNR, Luxenburg; SMWK Germany via the M-era.net programme, project 9557,
   - [MatCHMaker](https://he-matchmaker.eu/) (2022-2026) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 101091687.
+  - [PINK](https://pink-project.eu/) (2024-2027) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 101137809.
 
 
 
@@ -172,6 +204,7 @@ We gratefully acknowledge the following projects for supporting the development
 [Discovery of custom backends]: https://emmc-asbl.github.io/tripper/latest/backend_discovery/
 [tripper.datadoc]: https://emmc-asbl.github.io/tripper/latest/datadoc/introduction/
 [tripper.mappings]: https://emmc-asbl.github.io/tripper/latest/api_reference/mappings/mappings/
+[tripper.units]: https://emmc-asbl.github.io/tripper/latest/units/units/
 [tripper.convert]: https://emmc-asbl.github.io/tripper/latest/api_reference/convert/convert/
 [Known issues]: https://emmc-asbl.github.io/tripper/latest/known-issues/
 [MIT license]: https://emmc-asbl.github.io/tripper/latest/LICENSE/
@@ -189,4 +222,5 @@ We gratefully acknowledge the following projects for supporting the development
 [StarDog]: https://www.stardog.com/
 [GraphDB]: https://www.ontotext.com/products/graphdb/
 [Pint]: https://pint.readthedocs.io/en/stable/
+[pre-commit]: https://pre-commit.com/