tripper 0.3.4__tar.gz → 0.4.2__tar.gz

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/cd_release.yml

@@ -8,7 +8,7 @@ on:
 jobs:
   build:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.9.2
     if: github.repository == 'EMMC-ASBL/tripper' && startsWith(github.ref, 'refs/tags/v')
     with:
       # General
@@ -20,7 +20,7 @@ jobs:
       # Build package
       python_package: true
       package_dirs: tripper
-      python_version_build: "3.9"
+      python_version_build: "3.11"
       build_libs: "flit"
       build_cmd: "flit build"
       build_dir: "dist"
@@ -29,7 +29,7 @@ jobs:
 
       # Build & publish documentation
       update_docs: true
-      python_version_docs: "3.9"
+      python_version_docs: "3.11"
       doc_extras: "[docs]"
       changelog_exclude_labels: "skip_changelog,duplicate,question,invalid,wontfix"
       docs_framework: mkdocs

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/ci_automerge_dependency_prs.yml

@@ -7,7 +7,7 @@ on:
 jobs:
   update-dependencies-branch:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL' && ( ( startsWith(github.event.pull_request.head.ref, 'dependabot/') && github.actor == 'dependabot[bot]' ) || ( github.event.pull_request.head.ref == 'ci/update-pyproject' && github.actor == 'TEAM4-0' ) )
     secrets:
       PAT: ${{ secrets.RELEASE_PAT }}

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/ci_cd_updated_main.yml

@@ -7,7 +7,7 @@ on:
 jobs:
   update-deps-branch-and-docs:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       # General

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/ci_check_dependencies.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   check-dependencies:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       git_username: "TEAM 4.0[bot]"

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/ci_tests.yml

@@ -10,16 +10,17 @@ on:
 jobs:
   basic-tests:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.9.2
     with:
       ## General settings:
       install_extras: "[dev]"
 
       ## pre-commit
       run_pre-commit: false
+      skip_pre-commit_hooks: "generate-context-and-doc"
 
       ## pylint & safety
-      python_version_pylint_safety: "3.9"
+      python_version_pylint_safety: "3.11"
 
       # pylint-specific settings
       run_pylint: true
@@ -28,32 +29,17 @@ jobs:
         --rcfile=pyproject.toml --disable=import-outside-toplevel,redefined-outer-name tests
 
       # safety-specific settings
-      run_safety: true
-      # 48547: RDFLib vulnerability: https://pyup.io/vulnerabilities/PVE-2022-48547/48547/
-      # 44715-44717: NumPy vulnerabilities:
-      #  https://pyup.io/vulnerabilities/CVE-2021-41495/44715/
-      #  https://pyup.io/vulnerabilities/CVE-2021-41496/44716/
-      #  https://pyup.io/vulnerabilities/CVE-2021-34141/44717/
-      # 70612: Jinja2 vulnerability. Only used as subdependency for mkdocs++ in tripper.
-      #  https://data.safetycli.com/v/70612/97c/
-      #  https://data.safetycli.com/v/72715/97c/   # update to mkdocs>=9.5.32
-      safety_options: |
-        --ignore=48547
-        --ignore=44715
-        --ignore=44716
-        --ignore=44717
-        --ignore=70612
-        --ignore=72715
+      run_safety: false
 
       ## Build package
       run_build_package: true
-      python_version_package: "3.9"
+      python_version_package: "3.11"
       build_libs: flit
       build_cmd: flit build
 
       ## Build documentation
       run_build_docs: true
-      python_version_docs: "3.9"
+      python_version_docs: "3.11"
       warnings_as_errors: true
       use_mkdocs: true
 
@@ -62,13 +48,38 @@ jobs:
       update_docs_landing_page: true
       package_dirs: tripper
 
+  safety:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@main
+      - name: Run Safety CLI to check for vulnerabilities
+        uses: pyupio/safety-action@v1
+        with:
+          api-key: ${{ secrets.SAFETY_API_KEY }}
+          args: --detailed-output # To always see detailed output from this action
+
   pytest:
     runs-on: ubuntu-latest
 
+
+    services:
+      fuseki:
+        image: stain/jena-fuseki
+        env:
+          ADMIN_PASSWORD: admin0
+          FUSEKI_DATASET_1: test_repo
+        ports:
+          - 3030:3030
+        options: >-
+          --health-cmd "curl -f http://localhost:3030 || exit 1"
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
 
     steps:
     - name: Checkout tripper
@@ -93,8 +104,8 @@ jobs:
       run: pytest -vvv --cov-report=xml --doctest-modules
 
     - name: Upload coverage to Codecov
-      if: matrix.python-version == '3.9' && github.repository == 'EMMC-ASBL/tripper'
-      uses: codecov/codecov-action@v4
+      if: matrix.python-version == '3.11' && github.repository == 'EMMC-ASBL/tripper'
+      uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -107,7 +118,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
 
     steps:
     - name: Checkout tripper

{tripper-0.3.4 → tripper-0.4.2}/.github/workflows/ci_update_dependencies.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   create-collected-pr:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.8.2
+    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.9.2
     if: github.repository_owner == 'EMMC-ASBL'
     with:
       git_username: "TEAM 4.0[bot]"

{tripper-0.3.4 → tripper-0.4.2}/.gitignore

@@ -15,3 +15,7 @@ site/
 
 # Build
 dist/
+
+# Test output
+route.svg
+coverage.xml

tripper-0.4.2/.hooks/generate-context-and-doc.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+
+# Enter repository root directory
+HERE="$(cd "$(dirname "$0")" && pwd)"
+cd "$HERE"/..
+
+# Generate JSON-LD context and keyword documentation
+python tripper/datadoc/keywords.py \
+    --context=tripper/context/0.3/context.json \
+    --keywords=docs/datadoc/keywords.md \
+    --prefixes=docs/datadoc/prefixes.md
+
+# Don't crash pre-commit in case the above fails on GitHub
+exit 0

tripper-0.4.2/.hooks/markdown-doctest.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+
+# Enter repository root directory
+HERE="$(cd "$(dirname "$0")" && pwd)"
+cd "$HERE"/..
+
+# Run doctest on all markdown files in the docs/ directory
+find docs -name '*.md' | xargs -n1 python -m doctest

{tripper-0.3.4 → tripper-0.4.2}/.pre-commit-config.yaml

@@ -32,7 +32,7 @@ repos:
       args: [--markdown-linebreak-ext=md]
 
   - repo: https://github.com/PyCQA/isort
-    rev: 5.13.2
+    rev: 6.0.1
     hooks:
     - id: isort
       args:
@@ -41,37 +41,55 @@ repos:
       - --skip-gitignore
 
   - repo: https://github.com/psf/black
-    rev: 24.10.0
+    rev: 25.1.0
     hooks:
     - id: black
       args: [--line-length=79]
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.7.10
+    rev: 1.8.3
     hooks:
     - id: bandit
       args: ["-r"]
       files: ^tripper/.*$
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.2
+    rev: v1.15.0
     hooks:
     - id: mypy
       exclude: ^tests/.*$
       additional_dependencies:
         - "types-requests"
+        - "types-pyyaml"
         - "pydantic"
 
   - repo: https://github.com/SINTEF/ci-cd
-    rev: v2.8.2
+    rev: v2.9.2
     hooks:
     - id: docs-api-reference
       args:
       - --package-dir=tripper
     - id: docs-landing-page
+    # - id: update-pyproject
 
   - repo: local
     hooks:
+    - id: generate-context-and-doc
+      name: Generate JSON-LD context and documentation
+      entry: .hooks/generate-context-and-doc.sh
+      language: script
+      pass_filenames: false
+      stages: ["pre-commit"]
+
+    # The doctests are too slow for running them in pre-commit.
+    # Run it as a test instead.
+    # - id: markdown-doctest
+    #   name: Run doctest on markdown documentation
+    #   entry: .hooks/markdown-doctest.sh
+    #   language: script
+    #   pass_filenames: false
+    #   stages: ["pre-commit"]
+
     - id: pylint
       name: pylint
       entry: pylint
@@ -82,6 +100,7 @@ repos:
       require_serial: true
       files: ^.*$
       exclude: ^tests/.*$
+
     - id: pylint-tests
       name: pylint - tests
       entry: pylint

{tripper-0.3.4 → tripper-0.4.2}/CHANGELOG.md

@@ -1,6 +1,110 @@
 # Changelog
 
-## [v0.3.4](https://github.com/EMMC-ASBL/tripper/tree/v0.3.4) (2024-10-15)
+## [v0.4.2](https://github.com/EMMC-ASBL/tripper/tree/v0.4.2) (2025-04-22)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.1...v0.4.2)
+
+**Merged pull requests:**
+
+- Development branch that merges loose ends together [\#380](https://github.com/EMMC-ASBL/tripper/pull/380) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.4.1](https://github.com/EMMC-ASBL/tripper/tree/v0.4.1) (2025-04-19)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.4.0...v0.4.1)
+
+**Closed issues:**
+
+- ts.remove does not work in sparqlwrapper. [\#350](https://github.com/EMMC-ASBL/tripper/issues/350)
+- exapand\_iri, documentation formatted wrongly. [\#348](https://github.com/EMMC-ASBL/tripper/issues/348)
+- Attrdict return non-expanded iris, is this correct? [\#341](https://github.com/EMMC-ASBL/tripper/issues/341)
+- The CONSTRUCT sparql query in \_load\_sparql used in load\_dict returns all datasets [\#336](https://github.com/EMMC-ASBL/tripper/issues/336)
+- Adding text in graphDB trough save\_datadoc is done incorrectly? [\#333](https://github.com/EMMC-ASBL/tripper/issues/333)
+- datadoc.dataset.\_load\_sparql uses a CONSTRUCT query, which is not implemented in the SPARQLWrapper [\#330](https://github.com/EMMC-ASBL/tripper/issues/330)
+- Include the JSON-LD context in the installed package [\#326](https://github.com/EMMC-ASBL/tripper/issues/326)
+- It is not possible to search for Literals in the graphdb backend [\#320](https://github.com/EMMC-ASBL/tripper/issues/320)
+- Validator for schema [\#294](https://github.com/EMMC-ASBL/tripper/issues/294)
+
+**Merged pull requests:**
+
+- Corrected DataSetvice to DataService [\#374](https://github.com/EMMC-ASBL/tripper/pull/374) ([francescalb](https://github.com/francescalb))
+- Fix typo in keywords documentation [\#373](https://github.com/EMMC-ASBL/tripper/pull/373) ([jesper-friis](https://github.com/jesper-friis))
+- Updated keywords documentation [\#371](https://github.com/EMMC-ASBL/tripper/pull/371) ([jesper-friis](https://github.com/jesper-friis))
+- Adding logos [\#368](https://github.com/EMMC-ASBL/tripper/pull/368) ([jesper-friis](https://github.com/jesper-friis))
+- Add resources \(classes\) to the JSON-LD context. [\#366](https://github.com/EMMC-ASBL/tripper/pull/366) ([jesper-friis](https://github.com/jesper-friis))
+- Added support for ASK and DESCRIBE queries in the sparqlwrapper backend [\#364](https://github.com/EMMC-ASBL/tripper/pull/364) ([jesper-friis](https://github.com/jesper-friis))
+- Improved formatting of keyword documentation table. [\#362](https://github.com/EMMC-ASBL/tripper/pull/362) ([jesper-friis](https://github.com/jesper-friis))
+- Test for the datadoc command-line tool [\#361](https://github.com/EMMC-ASBL/tripper/pull/361) ([jesper-friis](https://github.com/jesper-friis))
+- Fixed CONTEXT\_URL after branch 294-validator-for-schema was merged to master [\#359](https://github.com/EMMC-ASBL/tripper/pull/359) ([jesper-friis](https://github.com/jesper-friis))
+- Fix formatting [\#358](https://github.com/EMMC-ASBL/tripper/pull/358) ([jesper-friis](https://github.com/jesper-friis))
+- Added session [\#357](https://github.com/EMMC-ASBL/tripper/pull/357) ([jesper-friis](https://github.com/jesper-friis))
+- Added update\(\) method to sparqlwrapper backend [\#356](https://github.com/EMMC-ASBL/tripper/pull/356) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#355](https://github.com/EMMC-ASBL/tripper/pull/355) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- \[pre-commit.ci\] pre-commit autoupdate [\#353](https://github.com/EMMC-ASBL/tripper/pull/353) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Corrected sparqlquery for removing triples [\#351](https://github.com/EMMC-ASBL/tripper/pull/351) ([francescalb](https://github.com/francescalb))
+- Corrected formatting of example [\#349](https://github.com/EMMC-ASBL/tripper/pull/349) ([francescalb](https://github.com/francescalb))
+- Added test for Fuseki and fixed query to return TURTLE which works for both fuseki and graphdb [\#347](https://github.com/EMMC-ASBL/tripper/pull/347) ([francescalb](https://github.com/francescalb))
+- \[pre-commit.ci\] pre-commit autoupdate [\#346](https://github.com/EMMC-ASBL/tripper/pull/346) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Correct syntax [\#344](https://github.com/EMMC-ASBL/tripper/pull/344) ([jesper-friis](https://github.com/jesper-friis))
+- Correct syntax [\#343](https://github.com/EMMC-ASBL/tripper/pull/343) ([jesper-friis](https://github.com/jesper-friis))
+- Flb/expand iri in sparql query [\#340](https://github.com/EMMC-ASBL/tripper/pull/340) ([francescalb](https://github.com/francescalb))
+- disable pylint errors on too-many-positional-arguments [\#339](https://github.com/EMMC-ASBL/tripper/pull/339) ([francescalb](https://github.com/francescalb))
+- Fixed CONSTRUCT to return s and not o [\#338](https://github.com/EMMC-ASBL/tripper/pull/338) ([francescalb](https://github.com/francescalb))
+- Corrected literals in SELECT and CONSTRUCT queries in the sparqlwrapper backend [\#335](https://github.com/EMMC-ASBL/tripper/pull/335) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#332](https://github.com/EMMC-ASBL/tripper/pull/332) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added CONSTRUCT query to sparqlwrapper,  [\#331](https://github.com/EMMC-ASBL/tripper/pull/331) ([francescalb](https://github.com/francescalb))
+- Include context files in installation [\#328](https://github.com/EMMC-ASBL/tripper/pull/328) ([jesper-friis](https://github.com/jesper-friis))
+- Added PINK to contributing projects [\#327](https://github.com/EMMC-ASBL/tripper/pull/327) ([jesper-friis](https://github.com/jesper-friis))
+- Update dataset.py [\#325](https://github.com/EMMC-ASBL/tripper/pull/325) ([jesper-friis](https://github.com/jesper-friis))
+- Added units submodule for working with units and quantities defined in ontologies [\#324](https://github.com/EMMC-ASBL/tripper/pull/324) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#321](https://github.com/EMMC-ASBL/tripper/pull/321) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Schema validator [\#296](https://github.com/EMMC-ASBL/tripper/pull/296) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.4.0](https://github.com/EMMC-ASBL/tripper/tree/v0.4.0) (2025-02-10)
+
+[Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.3.4...v0.4.0)
+
+**Closed issues:**
+
+- Clean up documentation [\#302](https://github.com/EMMC-ASBL/tripper/issues/302)
+- Make datadoc windows compatible [\#301](https://github.com/EMMC-ASBL/tripper/issues/301)
+
+**Merged pull requests:**
+
+- \[pre-commit.ci\] pre-commit autoupdate [\#317](https://github.com/EMMC-ASBL/tripper/pull/317) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Add updateEndpoint to SPARQLwrapper [\#313](https://github.com/EMMC-ASBL/tripper/pull/313) ([torhaugl](https://github.com/torhaugl))
+- Updated the readme file [\#311](https://github.com/EMMC-ASBL/tripper/pull/311) ([jesper-friis](https://github.com/jesper-friis))
+- Drop support for Python 3.7 [\#310](https://github.com/EMMC-ASBL/tripper/pull/310) ([jesper-friis](https://github.com/jesper-friis))
+- Include prefixes from context when populating a triplestore from a csv file [\#309](https://github.com/EMMC-ASBL/tripper/pull/309) ([jesper-friis](https://github.com/jesper-friis))
+- Added support for username/password for sparqlwrapper [\#308](https://github.com/EMMC-ASBL/tripper/pull/308) ([jesper-friis](https://github.com/jesper-friis))
+- Implementing regex search [\#307](https://github.com/EMMC-ASBL/tripper/pull/307) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#306](https://github.com/EMMC-ASBL/tripper/pull/306) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Rename dataset [\#304](https://github.com/EMMC-ASBL/tripper/pull/304) ([jesper-friis](https://github.com/jesper-friis))
+- Change pathlib to be pathlib and not as uri. This fixes opening in wi… [\#303](https://github.com/EMMC-ASBL/tripper/pull/303) ([francescalb](https://github.com/francescalb))
+- Added fixes for the demonstration at the PINK demo [\#299](https://github.com/EMMC-ASBL/tripper/pull/299) ([jesper-friis](https://github.com/jesper-friis))
+- Renamed the dataset subpackage to datadoc [\#298](https://github.com/EMMC-ASBL/tripper/pull/298) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#287](https://github.com/EMMC-ASBL/tripper/pull/287) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Make datasets with a datamodel an individual of the datamodel [\#286](https://github.com/EMMC-ASBL/tripper/pull/286) ([jesper-friis](https://github.com/jesper-friis))
+- Re-applied fixes from testing datadoc on a use case for PINK. [\#285](https://github.com/EMMC-ASBL/tripper/pull/285) ([jesper-friis](https://github.com/jesper-friis))
+- Command-line datadoc script [\#281](https://github.com/EMMC-ASBL/tripper/pull/281) ([jesper-friis](https://github.com/jesper-friis))
+- Added documentation for datasets [\#280](https://github.com/EMMC-ASBL/tripper/pull/280) ([jesper-friis](https://github.com/jesper-friis))
+- Dataset TODOs [\#279](https://github.com/EMMC-ASBL/tripper/pull/279) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#277](https://github.com/EMMC-ASBL/tripper/pull/277) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Added csv parser to Tabledoc  [\#275](https://github.com/EMMC-ASBL/tripper/pull/275) ([jesper-friis](https://github.com/jesper-friis))
+- Updated dataset figures [\#274](https://github.com/EMMC-ASBL/tripper/pull/274) ([jesper-friis](https://github.com/jesper-friis))
+- New TableDoc class providing a table interface for data documentation [\#273](https://github.com/EMMC-ASBL/tripper/pull/273) ([jesper-friis](https://github.com/jesper-friis))
+- Updated dataset module [\#272](https://github.com/EMMC-ASBL/tripper/pull/272) ([jesper-friis](https://github.com/jesper-friis))
+- Corrected dataset module [\#271](https://github.com/EMMC-ASBL/tripper/pull/271) ([jesper-friis](https://github.com/jesper-friis))
+- Add query to SPARQLwrapper strategy [\#269](https://github.com/EMMC-ASBL/tripper/pull/269) ([torhaugl](https://github.com/torhaugl))
+- \[pre-commit.ci\] pre-commit autoupdate [\#268](https://github.com/EMMC-ASBL/tripper/pull/268) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- Add support for Python 3.13 [\#266](https://github.com/EMMC-ASBL/tripper/pull/266) ([jesper-friis](https://github.com/jesper-friis))
+- Updated requirements to allow Pint 0.24, which in turn opens for NumPy 2 [\#265](https://github.com/EMMC-ASBL/tripper/pull/265) ([jesper-friis](https://github.com/jesper-friis))
+- Updated documentation format for better rendering [\#262](https://github.com/EMMC-ASBL/tripper/pull/262) ([jesper-friis](https://github.com/jesper-friis))
+- Predefined EMMO namespace with checking and label lookup [\#261](https://github.com/EMMC-ASBL/tripper/pull/261) ([jesper-friis](https://github.com/jesper-friis))
+- \[pre-commit.ci\] pre-commit autoupdate [\#259](https://github.com/EMMC-ASBL/tripper/pull/259) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+- \[pre-commit.ci\] pre-commit autoupdate [\#258](https://github.com/EMMC-ASBL/tripper/pull/258) ([pre-commit-ci[bot]](https://github.com/apps/pre-commit-ci))
+-  Dataset [\#256](https://github.com/EMMC-ASBL/tripper/pull/256) ([jesper-friis](https://github.com/jesper-friis))
+
+## [v0.3.4](https://github.com/EMMC-ASBL/tripper/tree/v0.3.4) (2024-10-17)
 
 [Full Changelog](https://github.com/EMMC-ASBL/tripper/compare/v0.3.3...v0.3.4)
 

{tripper-0.3.4 → tripper-0.4.2}/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022 SINTEF
+Copyright (c) 2022-2025 SINTEF
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

tripper-0.4.2/MANIFEST.in

@@ -0,0 +1 @@
+recursive-include tripper/context/**

{tripper-0.3.4 → tripper-0.4.2}/PKG-INFO

@@ -1,91 +1,87 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: tripper
-Version: 0.3.4
+Version: 0.4.2
 Summary: A triplestore wrapper for Python.
 Keywords: triplestore,ontology,RDF
 Author-email: SINTEF <TEAM4.0@sintef.no>
-Requires-Python: >=3.7
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Classifier: Development Status :: 2 - Pre-Alpha
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Environment :: Plugins
 Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
-Requires-Dist: typing-extensions>=4.7.0,<4.7.1; python_version<'3.8'
-Requires-Dist: pint>=0.16.1,<0.24
-Requires-Dist: pre-commit==2.21.0 ; extra == "dev"
-Requires-Dist: pylint==2.15.5 ; extra == "dev"
-Requires-Dist: pytest==7.4.4 ; extra == "dev"
-Requires-Dist: pytest-cov==4.1.0 ; extra == "dev"
-Requires-Dist: EMMOntoPy>=0.5.0,<0.7.1 ; extra == "dev"
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "dev"
-Requires-Dist: SPARQLWrapper>=2.0.0,<2.0.1 ; extra == "dev"
-Requires-Dist: DLite-Python>=0.5.1,<0.5.17 ; extra == "dev"
-Requires-Dist: graphviz>=0.20.1,<0.20.2 ; extra == "dev"
-Requires-Dist: mike==2.1.2 ; extra == "dev"
-Requires-Dist: mkdocs==1.5.3 ; extra == "dev"
-Requires-Dist: mkdocs-autorefs==0.4.1 ; extra == "dev"
-Requires-Dist: mkdocs-awesome-pages-plugin==2.9.2 ; extra == "dev"
-Requires-Dist: mkdocs-material==9.5.17 ; extra == "dev"
-Requires-Dist: mkdocstrings==0.22.0 ; extra == "dev"
-Requires-Dist: mkdocstrings-python-legacy==0.2.3 ; extra == "dev"
-Requires-Dist: EMMOntoPy>=0.5.0,<0.7.1 ; extra == "docs"
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "docs"
-Requires-Dist: SPARQLWrapper>=2.0.0,<2.0.1 ; extra == "docs"
-Requires-Dist: DLite-Python>=0.5.1,<0.5.17 ; extra == "docs"
-Requires-Dist: mike==2.1.2 ; extra == "docs"
-Requires-Dist: mkdocs==1.5.3 ; extra == "docs"
-Requires-Dist: mkdocs-autorefs==0.4.1 ; extra == "docs"
-Requires-Dist: mkdocs-awesome-pages-plugin==2.9.2 ; extra == "docs"
-Requires-Dist: mkdocs-material==9.5.17 ; extra == "docs"
-Requires-Dist: mkdocstrings==0.22.0 ; extra == "docs"
-Requires-Dist: mkdocstrings-python-legacy==0.2.3 ; extra == "docs"
+License-File: LICENSE
+Requires-Dist: typing-extensions>=4.7.0,<4.13.1; python_version < '3.9'
+Requires-Dist: tripper[mappings] ; extra == "datadoc"
+Requires-Dist: PyLD>=2.0.0,<2.0.5 ; extra == "datadoc"
+Requires-Dist: PyYaml>=3.0.0,<6.0.3 ; extra == "datadoc"
+Requires-Dist: requests>=2.0.0,<3.4.1 ; extra == "datadoc"
+Requires-Dist: tripper[pre-commit, docs] ; extra == "dev"
+Requires-Dist: tripper[testing] ; extra == "docs"
+Requires-Dist: mike==2.1.3 ; extra == "docs"
+Requires-Dist: mkdocs==1.6.1 ; extra == "docs"
+Requires-Dist: mkdocs-autorefs==1.4.1 ; extra == "docs"
+Requires-Dist: mkdocs-awesome-pages-plugin==2.10.1 ; extra == "docs"
+Requires-Dist: mkdocs-github-admonitions-plugin==0.0.3 ; extra == "docs"
+Requires-Dist: mkdocs-material==9.6.11 ; extra == "docs"
+Requires-Dist: mkdocstrings==0.27.0 ; extra == "docs"
+Requires-Dist: mkdocstrings-python-legacy==0.2.4 ; extra == "docs"
+Requires-Dist: tripper[units] ; extra == "mappings"
 Requires-Dist: pre-commit==4.0.1 ; extra == "pre-commit"
-Requires-Dist: pylint==2.15.5 ; extra == "pre-commit"
-Requires-Dist: pint>=0.16.1,<0.24 ; extra == "testing"
-Requires-Dist: pytest==7.4.4 ; extra == "testing"
-Requires-Dist: pytest-cov==4.1.0 ; extra == "testing"
-Requires-Dist: EMMOntoPy>=0.5.0,<0.7.1 ; extra == "testing"
-Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "testing"
-Requires-Dist: SPARQLWrapper>=2.0.0,<2.0.1 ; extra == "testing"
-Requires-Dist: DLite-Python>=0.5.1,<0.5.17 ; extra == "testing"
+Requires-Dist: pylint==3.3.4 ; extra == "pre-commit"
+Requires-Dist: tripper[datadoc, mappings, testing-core] ; extra == "testing"
+Requires-Dist: dlite-python>=0.5.27 ; extra == "testing" and ( python_version>='3.8')
+Requires-Dist: emmontopy>=0.5.0,<0.7.1 ; extra == "testing" and ( python_version<'3.13')
 Requires-Dist: graphviz>=0.20.1,<0.20.2 ; extra == "testing"
-Requires-Dist: pytest==7.4.4 ; extra == "testing-core"
-Requires-Dist: pytest-cov==4.1.0 ; extra == "testing-core"
+Requires-Dist: numpy<2.1.0 ; extra == "testing" and ( python_version>='3.13')
+Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "testing"
+Requires-Dist: sparqlwrapper>=2.0.0,<2.0.1 ; extra == "testing"
+Requires-Dist: pytest==8.3.4 ; extra == "testing-core"
+Requires-Dist: pytest-cov==5.0.0 ; extra == "testing-core" and ( python_version<'3.9')
+Requires-Dist: pytest-cov==6.0.0 ; extra == "testing-core" and ( python_version>='3.9')
+Requires-Dist: pint>=0.21.1,<0.26 ; extra == "units" and ( python_version<'3.9')
+Requires-Dist: pint>=0.24.1,<0.26 ; extra == "units" and ( python_version>='3.9')
+Requires-Dist: rdflib>=6.3.0,<7.0.0 ; extra == "units"
 Project-URL: Changelog, https://github.com/EMMC-ASBL/tripper/blob/master/CHANGELOG.md
 Project-URL: Documentation, https://EMMC-ASBL.github.io/tripper
 Project-URL: Home, https://github.com/EMMC-ASBL/tripper
 Project-URL: Issue Tracker, https://github.com/EMMC-ASBL/tripper/issues
 Project-URL: Package, https://pypi.org/project/tripper
 Project-URL: Source, https://github.com/EMMC-ASBL/tripper
+Provides-Extra: datadoc
 Provides-Extra: dev
 Provides-Extra: docs
+Provides-Extra: mappings
 Provides-Extra: pre-commit
 Provides-Extra: testing
 Provides-Extra: testing-core
+Provides-Extra: units
 
-Tripper
-=======
-*Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends.*
-
+<img src="docs/figs/tripper_logo.svg" alt="Tripper logo" align="right" width="96" height="96">
 
 [![PyPI](https://img.shields.io/pypi/v/tripper?logo=pypi)](https://pypi.org/project/tripper)
 [![Documentation](https://img.shields.io/badge/documentation-informational?logo=github)](https://emmc-asbl.github.io/tripper/latest/)
 [![CI tests](https://github.com/EMMC-ASBL/tripper/workflows/CI%20-%20Tests/badge.svg)](https://github.com/EMMC-ASBL/tripper/actions/workflows/ci_tests.yml?query=branch%3Amaster)
 [![DOI](https://zenodo.org/badge/547162834.svg)](https://zenodo.org/badge/latestdoi/547162834)
 
+*Triplestore wrapper for Python providing a simple and consistent interface to a range of triplestore backends*
+
+
+Tripper
+=======
 
 Getting started
 ---------------
 * [Tutorial]
-* [Discovery of custom backends]
+* [Documentation]
 * [Reference manual]
 
 
@@ -111,11 +107,14 @@ New namespaces can be defined with the [`tripper.Namespace`][Namespace] class.
 A triplestore wrapper is created with the [`tripper.Triplestore`][Triplestore] class.
 
 
-Advanced features
------------------
-The submodules `mappings` and `convert` provide additional functionality beyond interfacing triplestore backends:
-- **tripper.mappings**: traverse mappings stored in the triplestore and find possible mapping routes.
-- **tripper.convert**: convert between RDF and other data representations.
+Sub-packages
+------------
+Additional functionality beyond interfacing triplestore backends is provided by specialised sub-package:
+
+* [tripper.datadoc]: An API for data documentation.
+* [tripper.units]: Working with units and quantities defined in ontologies.
+* [tripper.mappings]: Traverse mappings stored in the triplestore and find possible mapping routes.
+* [tripper.convert]: Convert between RDF and other data representations.
 
 
 Available backends
@@ -128,9 +127,9 @@ The following backends are currently available, either in Tripper or other packa
 | ontopy        | [tripper]    | EMMOntoPy               | Backend for [EMMOntoPy]. In-memory.
 | sparqlwrapper | [tripper]    | sparqlwrapper           | Generic backend for all triplestores supported by [sparqlwrapper].
 | collection    | [tripper]    | DLite-Python            | Backend to a [DLite] collection.
+| graphdb       | [tripper]    | sparqlwrapper           | Backend to [GraphDB].
 | fuseki        | [PyBackTrip] | sparqlwrapper           | Backend to [fuseki].
 | stardog       | [PyBackTrip] | sparqlwrapper,pystardog | Backend to [StarDog].
-| graphdb       | [PyBackTrip] | sparqlwrapper           | Backend to [GraphDB].
 
 
 Installation
@@ -173,12 +172,18 @@ We gratefully acknowledge the following projects for supporting the development
   - [VIPCOAT](https://www.vipcoat.eu/) (2021-2025) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 952903.
   - MEDIATE (2022-2025) that receives funding from the RCN, Norway; FNR, Luxenburg; SMWK Germany via the M-era.net programme, project 9557,
   - [MatCHMaker](https://he-matchmaker.eu/) (2022-2026) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 101091687.
+  - [PINK](https://pink-project.eu/) (2024-2027) that receives funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement n. 101137809.
 
 
 
 [Tutorial]: https://emmc-asbl.github.io/tripper/latest/tutorial/
-[Discovery of custom backends]: https://emmc-asbl.github.io/tripper/latest/backend_discovery/
+[Documentation]: https://emmc-asbl.github.io/tripper/latest/
 [Reference manual]: https://emmc-asbl.github.io/tripper/latest/api_reference/triplestore/
+[Discovery of custom backends]: https://emmc-asbl.github.io/tripper/latest/backend_discovery/
+[tripper.datadoc]: https://emmc-asbl.github.io/tripper/latest/datadoc/introduction/
+[tripper.mappings]: https://emmc-asbl.github.io/tripper/latest/api_reference/mappings/mappings/
+[tripper.units]: https://emmc-asbl.github.io/tripper/latest/units/units/
+[tripper.convert]: https://emmc-asbl.github.io/tripper/latest/api_reference/convert/convert/
 [Known issues]: https://emmc-asbl.github.io/tripper/latest/known-issues/
 [MIT license]: https://emmc-asbl.github.io/tripper/latest/LICENSE/
 [tripper]: https://emmc-asbl.github.io/tripper