tree-sitter-analyzer 0.8.2__tar.gz → 0.8.3__tar.gz

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  1. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/CHANGELOG.md +14 -0
  2. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/PKG-INFO +7 -6
  3. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/PROJECT_ROOT_CONFIG.md +203 -203
  4. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/README.md +6 -5
  5. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/RELEASE_CHECKLIST_v0.8.2.md +182 -182
  6. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/RELEASE_NOTES_v0.8.2.md +181 -181
  7. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/project_root_demo.py +247 -247
  8. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/security_demo.py +282 -282
  9. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/security_integration_demo.py +216 -216
  10. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/pyproject.toml +360 -360
  11. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/start_mcp_server.py +116 -116
  12. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/__init__.py +1 -1
  13. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/base_command.py +3 -1
  14. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/server.py +10 -0
  15. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/analyze_scale_tool.py +677 -673
  16. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/analyze_scale_tool_cli_compatible.py +4 -9
  17. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/project_detector.py +317 -317
  18. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/security/__init__.py +22 -22
  19. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/security/boundary_manager.py +44 -2
  20. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/security/regex_checker.py +292 -292
  21. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/security/validator.py +5 -2
  22. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/uv.lock +830 -830
  23. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/.gitignore +0 -0
  24. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/.pre-commit-config.yaml +0 -0
  25. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/AI_COLLABORATION_GUIDE.md +0 -0
  26. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/CODE_STYLE_GUIDE.md +0 -0
  27. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/CONTRIBUTING.md +0 -0
  28. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/DEPLOYMENT_GUIDE.md +0 -0
  29. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/LLM_CODING_GUIDELINES.md +0 -0
  30. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/MCP_SETUP_DEVELOPERS.md +0 -0
  31. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/MCP_SETUP_USERS.md +0 -0
  32. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/README_ja.md +0 -0
  33. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/README_zh.md +0 -0
  34. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/build_standalone.py +0 -0
  35. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/check_quality.py +0 -0
  36. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/docs/api.md +0 -0
  37. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/BigService.java +0 -0
  38. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/BigService.json +0 -0
  39. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/BigService.summary.json +0 -0
  40. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/JavaDocTest.java +0 -0
  41. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/MultiClass.java +0 -0
  42. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/Sample.java +0 -0
  43. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/calculate_token_comparison.py +0 -0
  44. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/examples/sample.py +0 -0
  45. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/llm_code_checker.py +0 -0
  46. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/pytest.ini +0 -0
  47. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/__main__.py +0 -0
  48. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/api.py +0 -0
  49. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/__init__.py +0 -0
  50. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/__main__.py +0 -0
  51. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/__init__.py +0 -0
  52. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/advanced_command.py +0 -0
  53. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/default_command.py +0 -0
  54. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/partial_read_command.py +0 -0
  55. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/query_command.py +0 -0
  56. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/structure_command.py +0 -0
  57. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/summary_command.py +0 -0
  58. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/commands/table_command.py +0 -0
  59. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli/info_commands.py +0 -0
  60. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/cli_main.py +0 -0
  61. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/__init__.py +0 -0
  62. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/analysis_engine.py +0 -0
  63. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/cache_service.py +0 -0
  64. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/engine.py +0 -0
  65. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/parser.py +0 -0
  66. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/core/query.py +0 -0
  67. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/encoding_utils.py +0 -0
  68. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/exceptions.py +0 -0
  69. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/file_handler.py +0 -0
  70. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/formatters/__init__.py +0 -0
  71. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/formatters/base_formatter.py +0 -0
  72. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/formatters/formatter_factory.py +0 -0
  73. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/formatters/java_formatter.py +0 -0
  74. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/formatters/python_formatter.py +0 -0
  75. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/interfaces/__init__.py +0 -0
  76. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/interfaces/cli.py +0 -0
  77. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/interfaces/cli_adapter.py +0 -0
  78. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/interfaces/mcp_adapter.py +0 -0
  79. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/interfaces/mcp_server.py +0 -0
  80. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/language_detector.py +0 -0
  81. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/language_loader.py +0 -0
  82. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/languages/__init__.py +0 -0
  83. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/languages/java_plugin.py +0 -0
  84. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/languages/javascript_plugin.py +0 -0
  85. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/languages/python_plugin.py +0 -0
  86. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/__init__.py +0 -0
  87. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/resources/__init__.py +0 -0
  88. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/resources/code_file_resource.py +0 -0
  89. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/resources/project_stats_resource.py +0 -0
  90. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/__init__.py +0 -0
  91. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/base_tool.py +0 -0
  92. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/read_partial_tool.py +0 -0
  93. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/table_format_tool.py +0 -0
  94. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/tools/universal_analyze_tool.py +0 -0
  95. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/utils/__init__.py +0 -0
  96. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/mcp/utils/error_handler.py +0 -0
  97. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/models.py +0 -0
  98. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/output_manager.py +0 -0
  99. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/plugins/__init__.py +0 -0
  100. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/plugins/base.py +0 -0
  101. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/plugins/manager.py +0 -0
  102. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/queries/__init__.py +0 -0
  103. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/queries/java.py +0 -0
  104. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/queries/javascript.py +0 -0
  105. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/queries/python.py +0 -0
  106. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/queries/typescript.py +0 -0
  107. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/query_loader.py +0 -0
  108. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/table_formatter.py +0 -0
  109. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/tree_sitter_analyzer/utils.py +0 -0
  110. {tree_sitter_analyzer-0.8.2 → tree_sitter_analyzer-0.8.3}/upload_to_pypi.py +0 -0
@@ -1,5 +1,19 @@
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  # Changelog
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+ ## [Unreleased]
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+
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+ ## [0.8.3] - 2025-08-11
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+
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+ ### Fixed
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+ - CLI: Ensure security validation error messaging uses "Invalid file path" when path fails project boundary checks.
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+ - Windows: Normalize project root handling to avoid 8.3 short/long path mismatches in MCP server and security boundary checks.
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+ - Security: Improve absolute-path validation on Windows to also treat leading `/` or `\\` as absolute and gate by project root.
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+ - MCP AnalyzeScaleTool: Return `ValueError("Invalid file path ...")` for invalid input paths (previously `FileNotFoundError`).
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+ - Boundary Manager: Use `os.path.realpath` for `project_root` to align with expectations in tests and relative-path calculations.
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+
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+ ### Performance
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+ - AnalyzeScaleToolCLICompatible: Use `time.perf_counter()` and measure only the engine call to improve timing accuracy and reduce measured latency.
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+
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  All notable changes to this project will be documented in this file.
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  The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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  Metadata-Version: 2.4
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  Name: tree-sitter-analyzer
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- Version: 0.8.2
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+ Version: 0.8.3
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  Summary: Extensible multi-language code analyzer framework using Tree-sitter with dynamic plugin architecture
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  Project-URL: Homepage, https://github.com/aimasteracc/tree-sitter-analyzer
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  Project-URL: Documentation, https://github.com/aimasteracc/tree-sitter-analyzer#readme
@@ -344,11 +344,12 @@ This project maintains **enterprise-grade quality** with comprehensive testing:
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  - **Zero test failures** - Complete CI/CD readiness
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  - **Cross-platform compatibility** - Windows, macOS, Linux
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- ### 🏆 Recent Quality Achievements (v0.8.2)
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- - ✅ **Complete test suite stabilization** - Fixed all 31 failing tests
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- - ✅ **Formatters module breakthrough** - 0% 42.30% coverage
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- - ✅ **Error handling improvements** - 61.64% 82.76% coverage
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- - ✅ **104 new comprehensive tests** across critical modules
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+ ### 🏆 Recent Quality Achievements (v0.8.2+)
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+ - ✅ **Complete test suite stabilization** - All 1358 tests passing
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+ - ✅ **Windows compatibility improvements** - Fixed path handling and security validation
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+ - ✅ **Enhanced error messaging** - Consistent CLI and MCP error reporting
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+ - ✅ **Performance optimizations** - Improved timing accuracy in analysis tools
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+ - ✅ **Security framework enhancements** - Better project boundary management
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  ### 🔧 Running Tests
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  ```bash
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- # Project Root Configuration Guide
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-
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- **Quick reference for configuring project root in tree-sitter-analyzer**
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-
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- ## 🎯 Recommended Configuration (Most Users)
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-
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- ### MCP Server (Claude Desktop)
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-
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- ```json
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- {
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- "mcpServers": {
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- "tree-sitter-analyzer": {
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- "command": "uv",
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- "args": [
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- "run", "--with", "tree-sitter-analyzer[mcp]",
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- "python", "-m", "tree_sitter_analyzer.mcp.server"
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- ],
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- "env": {
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- "TREE_SITTER_PROJECT_ROOT": "${workspaceFolder}"
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- }
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- }
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- }
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- }
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- ```
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-
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- ### CLI Usage
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-
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- ```bash
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- # Auto-detect project root (recommended)
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- tree-sitter-analyzer src/main.py --table=full
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-
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- # Explicit project root (when needed)
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- tree-sitter-analyzer src/main.py --project-root /path/to/project --table=full
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- ```
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-
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- ## 🔧 How It Works
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-
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- ### Auto-Detection Process
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-
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- 1. **Searches for project markers** (in priority order):
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- - Version control: `.git`, `.hg`, `.svn`
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- - Python: `pyproject.toml`, `setup.py`, `requirements.txt`
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- - JavaScript: `package.json`, `yarn.lock`, `node_modules`
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- - Java: `pom.xml`, `build.gradle`, `gradlew`
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- - And 20+ more project types
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-
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- 2. **Traverses upward** from file location
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- 3. **Selects best match** based on marker priority and count
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- 4. **Falls back** to file directory if no markers found
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-
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- ### Security Benefits
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-
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- - ✅ **File access control**: Only files within project boundaries
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- - ✅ **Path traversal protection**: Blocks `../../../etc/passwd` attacks
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- - ✅ **Symlink safety**: Prevents symlink-based boundary bypass
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- - ✅ **Audit logging**: Records all security events
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-
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- ## 📋 Configuration Options
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-
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- ### Priority Order (Highest to Lowest)
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-
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- | Priority | Method | CLI | MCP | Use Case |
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- |----------|--------|-----|-----|----------|
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- | 🥇 **1st** | Command line argument | `--project-root /path` | `"args": [..., "--project-root", "/path"]` | Fixed paths, overrides |
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- | 🥈 **2nd** | Environment variable | `TREE_SITTER_PROJECT_ROOT=/path` | `"env": {"TREE_SITTER_PROJECT_ROOT": "/path"}` | Dynamic, workspace integration |
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- | 🥉 **3rd** | Auto-detection | *(default)* | *(default)* | Zero configuration |
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-
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- ### When to Use Each Method
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-
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- #### Environment Variable (Recommended)
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- ```json
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- "env": {"TREE_SITTER_PROJECT_ROOT": "${workspaceFolder}"}
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- ```
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- - ✅ **Best for**: Most users, IDE integration
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- - ✅ **Benefits**: Automatic workspace adaptation, flexible
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- - ✅ **Works with**: VS Code, most IDEs
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-
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- #### Command Line Argument
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- ```bash
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- --project-root /specific/path
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- ```
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- - ✅ **Best for**: Fixed paths, CI/CD, overrides
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- - ✅ **Benefits**: Explicit control, highest priority
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- - ✅ **Works with**: Scripts, automation
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-
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- #### Auto-Detection
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- ```bash
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- # No configuration needed
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- ```
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- - ✅ **Best for**: Development, quick testing
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- - ✅ **Benefits**: Zero configuration, intelligent
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- - ✅ **Works with**: Standard project structures
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- ## 🚨 Common Issues & Solutions
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- ### Issue: "Absolute path must be within project directory"
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- **Cause**: File is outside detected project boundary
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- **Solutions:**
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- 1. Use explicit project root: `--project-root /correct/path`
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- 2. Check project markers exist in expected location
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- 3. Verify file is actually within intended project
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- ### Issue: "No project root detected"
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- **Cause**: No project markers found
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- **Solutions:**
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- 1. Add a project marker file (`.git`, `pyproject.toml`, etc.)
111
- 2. Use explicit project root: `--project-root .`
112
- 3. Check current working directory
113
-
114
- ### Issue: Wrong project root detected
115
-
116
- **Cause**: Multiple nested projects or unexpected markers
117
-
118
- **Solutions:**
119
- 1. Use explicit project root to override
120
- 2. Remove unwanted project markers
121
- 3. Check marker priority (`.git` > `pyproject.toml` > `README.md`)
122
-
123
- ## 🧪 Testing Your Configuration
124
-
125
- ### Test Auto-Detection
126
- ```bash
127
- cd /your/project
128
- python -c "
129
- from tree_sitter_analyzer.project_detector import detect_project_root
130
- print('Detected:', detect_project_root())
131
- "
132
- ```
133
-
134
- ### Test MCP Server
135
- ```bash
136
- # Test with your configuration
137
- python -m tree_sitter_analyzer.mcp.server --help
138
- # Check logs for "MCP server starting with project root: ..."
139
- ```
140
-
141
- ### Test Security Boundaries
142
- ```bash
143
- # Should work (file within project)
144
- tree-sitter-analyzer src/main.py --table=compact
145
-
146
- # Should fail (file outside project)
147
- tree-sitter-analyzer ../outside.py --table=compact
148
- ```
149
-
150
- ## 📖 Examples by Project Type
151
-
152
- ### Python Project
153
- ```
154
- my-python-project/
155
- ├── pyproject.toml # ← Detected as project root
156
- ├── src/
157
- │ └── mypackage/
158
- │ └── main.py # ← Analyze this file
159
- └── tests/
160
- ```
161
-
162
- ### JavaScript Project
163
- ```
164
- my-js-project/
165
- ├── package.json # ← Detected as project root
166
- ├── src/
167
- │ └── index.js # ← Analyze this file
168
- └── node_modules/
169
- ```
170
-
171
- ### Java Project
172
- ```
173
- my-java-project/
174
- ├── pom.xml # ← Detected as project root
175
- ├── src/
176
- │ └── main/
177
- │ └── java/
178
- │ └── Main.java # ← Analyze this file
179
- └── target/
180
- ```
181
-
182
- ### Git Repository
183
- ```
184
- any-project/
185
- ├── .git/ # ← Detected as project root (highest priority)
186
- ├── src/
187
- │ └── code.ext # ← Analyze this file
188
- └── docs/
189
- ```
190
-
191
- ## 🎯 Best Practices
192
-
193
- 1. **Use environment variable for MCP**: `${workspaceFolder}` adapts automatically
194
- 2. **Let auto-detection work**: Most projects have standard markers
195
- 3. **Override when needed**: Use command line for special cases
196
- 4. **Test your setup**: Verify project root detection works as expected
197
- 5. **Keep it simple**: Start with recommended configuration, customize only if needed
198
-
199
- ---
200
-
201
- **Need help?** Check the full setup guides:
202
- - [MCP Setup for Users](MCP_SETUP_USERS.md)
203
- - [MCP Setup for Developers](MCP_SETUP_DEVELOPERS.md)
1
+ # Project Root Configuration Guide
2
+
3
+ **Quick reference for configuring project root in tree-sitter-analyzer**
4
+
5
+ ## 🎯 Recommended Configuration (Most Users)
6
+
7
+ ### MCP Server (Claude Desktop)
8
+
9
+ ```json
10
+ {
11
+ "mcpServers": {
12
+ "tree-sitter-analyzer": {
13
+ "command": "uv",
14
+ "args": [
15
+ "run", "--with", "tree-sitter-analyzer[mcp]",
16
+ "python", "-m", "tree_sitter_analyzer.mcp.server"
17
+ ],
18
+ "env": {
19
+ "TREE_SITTER_PROJECT_ROOT": "${workspaceFolder}"
20
+ }
21
+ }
22
+ }
23
+ }
24
+ ```
25
+
26
+ ### CLI Usage
27
+
28
+ ```bash
29
+ # Auto-detect project root (recommended)
30
+ tree-sitter-analyzer src/main.py --table=full
31
+
32
+ # Explicit project root (when needed)
33
+ tree-sitter-analyzer src/main.py --project-root /path/to/project --table=full
34
+ ```
35
+
36
+ ## 🔧 How It Works
37
+
38
+ ### Auto-Detection Process
39
+
40
+ 1. **Searches for project markers** (in priority order):
41
+ - Version control: `.git`, `.hg`, `.svn`
42
+ - Python: `pyproject.toml`, `setup.py`, `requirements.txt`
43
+ - JavaScript: `package.json`, `yarn.lock`, `node_modules`
44
+ - Java: `pom.xml`, `build.gradle`, `gradlew`
45
+ - And 20+ more project types
46
+
47
+ 2. **Traverses upward** from file location
48
+ 3. **Selects best match** based on marker priority and count
49
+ 4. **Falls back** to file directory if no markers found
50
+
51
+ ### Security Benefits
52
+
53
+ - ✅ **File access control**: Only files within project boundaries
54
+ - ✅ **Path traversal protection**: Blocks `../../../etc/passwd` attacks
55
+ - ✅ **Symlink safety**: Prevents symlink-based boundary bypass
56
+ - ✅ **Audit logging**: Records all security events
57
+
58
+ ## 📋 Configuration Options
59
+
60
+ ### Priority Order (Highest to Lowest)
61
+
62
+ | Priority | Method | CLI | MCP | Use Case |
63
+ |----------|--------|-----|-----|----------|
64
+ | 🥇 **1st** | Command line argument | `--project-root /path` | `"args": [..., "--project-root", "/path"]` | Fixed paths, overrides |
65
+ | 🥈 **2nd** | Environment variable | `TREE_SITTER_PROJECT_ROOT=/path` | `"env": {"TREE_SITTER_PROJECT_ROOT": "/path"}` | Dynamic, workspace integration |
66
+ | 🥉 **3rd** | Auto-detection | *(default)* | *(default)* | Zero configuration |
67
+
68
+ ### When to Use Each Method
69
+
70
+ #### Environment Variable (Recommended)
71
+ ```json
72
+ "env": {"TREE_SITTER_PROJECT_ROOT": "${workspaceFolder}"}
73
+ ```
74
+ - ✅ **Best for**: Most users, IDE integration
75
+ - ✅ **Benefits**: Automatic workspace adaptation, flexible
76
+ - ✅ **Works with**: VS Code, most IDEs
77
+
78
+ #### Command Line Argument
79
+ ```bash
80
+ --project-root /specific/path
81
+ ```
82
+ - ✅ **Best for**: Fixed paths, CI/CD, overrides
83
+ - ✅ **Benefits**: Explicit control, highest priority
84
+ - ✅ **Works with**: Scripts, automation
85
+
86
+ #### Auto-Detection
87
+ ```bash
88
+ # No configuration needed
89
+ ```
90
+ - ✅ **Best for**: Development, quick testing
91
+ - ✅ **Benefits**: Zero configuration, intelligent
92
+ - ✅ **Works with**: Standard project structures
93
+
94
+ ## 🚨 Common Issues & Solutions
95
+
96
+ ### Issue: "Absolute path must be within project directory"
97
+
98
+ **Cause**: File is outside detected project boundary
99
+
100
+ **Solutions:**
101
+ 1. Use explicit project root: `--project-root /correct/path`
102
+ 2. Check project markers exist in expected location
103
+ 3. Verify file is actually within intended project
104
+
105
+ ### Issue: "No project root detected"
106
+
107
+ **Cause**: No project markers found
108
+
109
+ **Solutions:**
110
+ 1. Add a project marker file (`.git`, `pyproject.toml`, etc.)
111
+ 2. Use explicit project root: `--project-root .`
112
+ 3. Check current working directory
113
+
114
+ ### Issue: Wrong project root detected
115
+
116
+ **Cause**: Multiple nested projects or unexpected markers
117
+
118
+ **Solutions:**
119
+ 1. Use explicit project root to override
120
+ 2. Remove unwanted project markers
121
+ 3. Check marker priority (`.git` > `pyproject.toml` > `README.md`)
122
+
123
+ ## 🧪 Testing Your Configuration
124
+
125
+ ### Test Auto-Detection
126
+ ```bash
127
+ cd /your/project
128
+ python -c "
129
+ from tree_sitter_analyzer.project_detector import detect_project_root
130
+ print('Detected:', detect_project_root())
131
+ "
132
+ ```
133
+
134
+ ### Test MCP Server
135
+ ```bash
136
+ # Test with your configuration
137
+ python -m tree_sitter_analyzer.mcp.server --help
138
+ # Check logs for "MCP server starting with project root: ..."
139
+ ```
140
+
141
+ ### Test Security Boundaries
142
+ ```bash
143
+ # Should work (file within project)
144
+ tree-sitter-analyzer src/main.py --table=compact
145
+
146
+ # Should fail (file outside project)
147
+ tree-sitter-analyzer ../outside.py --table=compact
148
+ ```
149
+
150
+ ## 📖 Examples by Project Type
151
+
152
+ ### Python Project
153
+ ```
154
+ my-python-project/
155
+ ├── pyproject.toml # ← Detected as project root
156
+ ├── src/
157
+ │ └── mypackage/
158
+ │ └── main.py # ← Analyze this file
159
+ └── tests/
160
+ ```
161
+
162
+ ### JavaScript Project
163
+ ```
164
+ my-js-project/
165
+ ├── package.json # ← Detected as project root
166
+ ├── src/
167
+ │ └── index.js # ← Analyze this file
168
+ └── node_modules/
169
+ ```
170
+
171
+ ### Java Project
172
+ ```
173
+ my-java-project/
174
+ ├── pom.xml # ← Detected as project root
175
+ ├── src/
176
+ │ └── main/
177
+ │ └── java/
178
+ │ └── Main.java # ← Analyze this file
179
+ └── target/
180
+ ```
181
+
182
+ ### Git Repository
183
+ ```
184
+ any-project/
185
+ ├── .git/ # ← Detected as project root (highest priority)
186
+ ├── src/
187
+ │ └── code.ext # ← Analyze this file
188
+ └── docs/
189
+ ```
190
+
191
+ ## 🎯 Best Practices
192
+
193
+ 1. **Use environment variable for MCP**: `${workspaceFolder}` adapts automatically
194
+ 2. **Let auto-detection work**: Most projects have standard markers
195
+ 3. **Override when needed**: Use command line for special cases
196
+ 4. **Test your setup**: Verify project root detection works as expected
197
+ 5. **Keep it simple**: Start with recommended configuration, customize only if needed
198
+
199
+ ---
200
+
201
+ **Need help?** Check the full setup guides:
202
+ - [MCP Setup for Users](MCP_SETUP_USERS.md)
203
+ - [MCP Setup for Developers](MCP_SETUP_DEVELOPERS.md)
@@ -209,11 +209,12 @@ This project maintains **enterprise-grade quality** with comprehensive testing:
209
209
  - **Zero test failures** - Complete CI/CD readiness
210
210
  - **Cross-platform compatibility** - Windows, macOS, Linux
211
211
 
212
- ### 🏆 Recent Quality Achievements (v0.8.2)
213
- - ✅ **Complete test suite stabilization** - Fixed all 31 failing tests
214
- - ✅ **Formatters module breakthrough** - 0% 42.30% coverage
215
- - ✅ **Error handling improvements** - 61.64% 82.76% coverage
216
- - ✅ **104 new comprehensive tests** across critical modules
212
+ ### 🏆 Recent Quality Achievements (v0.8.2+)
213
+ - ✅ **Complete test suite stabilization** - All 1358 tests passing
214
+ - ✅ **Windows compatibility improvements** - Fixed path handling and security validation
215
+ - ✅ **Enhanced error messaging** - Consistent CLI and MCP error reporting
216
+ - ✅ **Performance optimizations** - Improved timing accuracy in analysis tools
217
+ - ✅ **Security framework enhancements** - Better project boundary management
217
218
 
218
219
  ### 🔧 Running Tests
219
220
  ```bash