tracyspot 1.0.0__tar.gz

tracyspot-1.0.0/LICENSE

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+MIT License
+
+Copyright (c) 2025 Sami Chaaban
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

tracyspot-1.0.0/MANIFEST.in

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+recursive-include tracy/icons *.svg

tracyspot-1.0.0/PKG-INFO

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+Metadata-Version: 2.1
+Name: tracyspot
+Version: 1.0.0
+Summary: Spot navigator
+Home-page: https://github.com/sami-chaaban/tracy
+Author: Sami Chaaban
+Author-email: sami.chaaban@gmail.com
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+
+# Tracy
+
+Kymograph-guided spot navigation.
+
+## License<a name="license"></a>
+
+This project is licensed under the MIT License - see the [LICENSE.txt](https://github.com/sami-chaaban/tracy/blob/main/LICENSE.txt) file for details.

tracyspot-1.0.0/README.md

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+# Tracy
+
+Kymograph-guided spot navigation.
+
+## License<a name="license"></a>
+
+This project is licensed under the MIT License - see the [LICENSE.txt](https://github.com/sami-chaaban/tracy/blob/main/LICENSE.txt) file for details.

tracyspot-1.0.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=42", "wheel"]
+build-backend = "setuptools.build_meta"

tracyspot-1.0.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

tracyspot-1.0.0/setup.py

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+from setuptools import setup, find_packages
+from pathlib import Path
+
+this_dir = Path(__file__).parent
+long_description = (this_dir / "README.md").read_text(encoding="utf-8")
+
+setup(
+    name='tracyspot',
+    version='1.0.0',
+    description='Spot navigator',
+    long_description=long_description,
+    long_description_content_type="text/markdown",
+    author='Sami Chaaban',
+    author_email='sami.chaaban@gmail.com',
+    url='https://github.com/sami-chaaban/tracy',
+    packages=find_packages(),
+    include_package_data=True,
+    package_data={
+        'tracy': ['icons/*.svg', 'style.qss']
+    },
+    install_requires=[
+        'numpy',
+        'PyQt5',
+        'matplotlib',
+        'scipy',
+        'pandas',
+        'tifffile',
+        'read-roi',
+        'roifile',
+    ],
+    entry_points={
+        'gui_scripts': [
+            'tracy = tracy.__main__:main',
+        ],
+    },
+    classifiers=[
+        # Stability & audience
+        'Development Status :: 4 - Beta',
+        'Intended Audience :: Science/Research',
+        'Topic :: Scientific/Engineering :: Visualization',
+
+        # Supported Python versions
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.10',
+        'Programming Language :: Python :: 3.11',
+
+        # License & OS
+        'License :: OSI Approved :: MIT License',
+        'Operating System :: OS Independent',
+    ],
+    python_requires='>=3.10',
+)

tracyspot-1.0.0/tracy/__init__.py

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+__version__ = "1.0.0"

tracyspot-1.0.0/tracy/__main__.py

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+#!/usr/bin/env python3
+
+import sys, os
+import numpy as np
+from PyQt5.QtWidgets import QApplication
+from PyQt5.QtCore import QFile, QTextStream
+from PyQt5.QtGui import QFontDatabase
+from tracy.navigator import KymographNavigator
+
+import matplotlib as mpl
+
+mpl.rcParams.update({
+    'font.family': ['Helvetica Neue', 'Helvetica', 'Arial', 'sans-serif'],  # fallback list
+    'font.size': 14,                  # adjust the size to match your UI
+})
+
+def main():
+    # Create the application instance.
+    app = QApplication(sys.argv)
+    
+    # Set the application name and display name.
+    app.setApplicationName("Tracy")
+    try:
+        # If your version of PyQt supports it, this will update the menu title on macOS.
+        app.setApplicationDisplayName("Tracy")
+    except AttributeError:
+        pass
+
+    # For below, need qss font to be font-family: Helvetica Neue Lt Std, Helvetica Neue, Helvetica, Arial, sans-serif;
+    # also, package data needs to include the fonts
+
+    # font_db = QFontDatabase()
+    # family = None
+    # for fname in ("HelveticaNeueLTStd-Roman.otf", "HelveticaNeueLTStd-Bd.otf"):
+    #     path = resource_path(f"fonts/{fname}")
+    #     fid  = font_db.addApplicationFont(path)
+    #     if fid == -1:
+    #         print(f"⚠️ Failed to load font: {path}")
+    #     else:
+    #         fams = font_db.applicationFontFamilies(fid)
+    #         print(f"✅ Loaded {fname}, registered as: {fams}")
+    #         if fams:
+    #             family = fams[0]
+    # if family:
+    #     default_font = font_db.font(family, "55 Roman", 14)
+    #     app.setFont(default_font)
+    #     print(f"✨ App default font set to: '{default_font.family()}', weight={default_font.weight()}")
+
+    qss_path = resource_path('style.qss')
+    app.setStyleSheet(load_stylesheet(qss_path))
+
+    # Create the main window.
+    navigator = KymographNavigator()
+    
+    navigator.showMaximized()
+
+    # Show the navigator window.
+    navigator.show()
+
+    # Start the application event loop.
+    sys.exit(app.exec_())
+
+def resource_path(relative):
+    if getattr(sys, 'frozen', False):
+        base = sys._MEIPASS
+    else:
+        base = os.path.dirname(__file__)
+    return os.path.join(base, relative)
+
+def load_stylesheet(path):
+    file = QFile(path)
+    file.open(QFile.ReadOnly | QFile.Text)
+    stream = QTextStream(file)
+    return stream.readAll()
+
+if __name__ == "__main__":
+    main()