trackplot 0.2.1__tar.gz → 0.2.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. {trackplot-0.2.1 → trackplot-0.2.3}/PKG-INFO +3 -4
  2. {trackplot-0.2.1 → trackplot-0.2.3}/Pipfile +1 -1
  3. {trackplot-0.2.1 → trackplot-0.2.3}/Pipfile.lock +528 -509
  4. {trackplot-0.2.1 → trackplot-0.2.3}/README.md +2 -3
  5. {trackplot-0.2.1 → trackplot-0.2.3}/pyproject.toml +1 -1
  6. {trackplot-0.2.1 → trackplot-0.2.3}/setup.py +3 -3
  7. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/ReadDepth.py +32 -16
  8. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/cli.py +1 -1
  9. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Reference.py +6 -14
  10. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/PKG-INFO +3 -4
  11. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/requires.txt +1 -1
  12. {trackplot-0.2.1 → trackplot-0.2.3}/LICENSE +0 -0
  13. {trackplot-0.2.1 → trackplot-0.2.3}/setup.cfg +0 -0
  14. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/__init__.py +0 -0
  15. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/anno/AxLabel.py +0 -0
  16. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/anno/__init__.py +0 -0
  17. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/anno/theme.py +0 -0
  18. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/CoordinateMap.py +0 -0
  19. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/GenomicLoci.py +0 -0
  20. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/Junction.py +0 -0
  21. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/Protein.py +0 -0
  22. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/Readder.py +0 -0
  23. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/Stroke.py +0 -0
  24. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/Transcript.py +0 -0
  25. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/__init__.py +0 -0
  26. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/base/pyUniprot.py +0 -0
  27. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/conf/DomainSetting.py +0 -0
  28. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/conf/__init__.py +0 -0
  29. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/conf/config.py +0 -0
  30. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/conf/drawing.py +0 -0
  31. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/ATAC.py +0 -0
  32. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Bam.py +0 -0
  33. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/BedGraph.py +0 -0
  34. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Bigwig.py +0 -0
  35. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Depth.py +0 -0
  36. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Fasta.py +0 -0
  37. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/File.py +0 -0
  38. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/HiCMatrixTrack.py +0 -0
  39. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Junction.py +0 -0
  40. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/Motif.py +0 -0
  41. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/ReadSegments.py +0 -0
  42. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/file/__init__.py +0 -0
  43. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/plot.py +0 -0
  44. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/plot_func.py +0 -0
  45. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot/plot_tests.py +0 -0
  46. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/SOURCES.txt +0 -0
  47. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/dependency_links.txt +0 -0
  48. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/entry_points.txt +0 -0
  49. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/not-zip-safe +0 -0
  50. {trackplot-0.2.1 → trackplot-0.2.3}/trackplot.egg-info/top_level.txt +0 -0
{trackplot-0.2.1 → trackplot-0.2.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: trackplot
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- Version: 0.2.1
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+ Version: 0.2.3
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  Home-page: https://github.com/ygidtu/trackplot
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
@@ -107,8 +107,7 @@ The trackplot is written in Python, and user could install it in a variety of wa
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  4. install from bioconda
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  ```bash
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- # Our software with new name is still under reiver by bioconda, please install with another methods
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- # conda install -c bioconda -c conda-forge trackplot
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+ conda install -c bioconda -c conda-forge trackplot
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  # or install trackplot into an isolated environments
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  conda create -n trackplot -c bioconda -c conda-forge trackplot
@@ -212,5 +211,5 @@ contact [Yiming Zhang](https://github.com/ygidtu) and
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  If you use Sashimi.py in your publication, please cite Sashimi.py by
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- [Zhang et al. Sashimi.py: a flexible toolkit for combinatorial analysis of genomic data. bioRxiv 2022.11.02.514803.](https://www.biorxiv.org/content/10.1101/2022.11.02.514803v1)
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+ [Zhang et al. bioRxiv, 2022.11.02.514803.](https://www.biorxiv.org/content/10.1101/2022.11.02.514803v1)
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{trackplot-0.2.1 → trackplot-0.2.3}/Pipfile RENAMED
@@ -5,7 +5,7 @@ name = "pypi"
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  [packages]
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  adjusttext = "*"
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- cairocffi = "*"
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+ cairocffi = "1.4.0"
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  click = "*"
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  click-option-group = "*"
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  filetype = "*"