toulligqc 2.5.4__tar.gz → 2.5.5__tar.gz

{toulligqc-2.5.4 → toulligqc-2.5.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: toulligqc
-Version: 2.5.4
+Version: 2.5.5
 Summary: A post sequencing QC tool for Oxford Nanopore sequencers
 Home-page: https://github.com/GenomicParisCentre/toulligQC
 Author: Genomic Paris Centre team

{toulligqc-2.5.4 → toulligqc-2.5.5}/toulligqc/plotly_graph_common.py

@@ -22,6 +22,7 @@
 
 from collections import defaultdict
 
+import pkgutil
 import numpy as np
 import pandas as pd
 import plotly.graph_objs as go
@@ -301,6 +302,10 @@ def _transparent_component(c, b, a):
         return '0' + r
     return r
 
+def _copy_latest_minjs(result_directory, js_file):
+    with open(result_directory + '/' + js_file , 'w+') as f:
+        plotly_min_js = pkgutil.get_data(__name__, "resources/plotly-latest.min.js").decode('utf8')
+        f.write(plotly_min_js) 
 
 def _create_and_save_div(fig, result_directory, main):
     div = py.plot(fig,
@@ -311,11 +316,13 @@ def _create_and_save_div(fig, result_directory, main):
 
     if result_directory is not None:
         output_file = result_directory + '/' + '_'.join(main.split())
+        js_file="plotly.min.js"
         py.plot(fig,
                 filename=output_file,
                 output_type="file",
-                include_plotlyjs="directory",
+                include_plotlyjs= js_file, 
                 auto_open=False)
+        _copy_latest_minjs(result_directory, js_file)
     else:
         output_file = None
 
@@ -622,9 +629,9 @@ def _pie_chart_graph(graph_name, count_sorted, color_palette, one_d_square, resu
                         method="update"
                     ),
                     dict(
-                        args=[{'visible': [False, False, False, True]},
+                        args=[{'visible': [False, False, True, False]},
                               {**_xaxis('Barcodes', dict(visible=True)),
-                               **_yaxis('Base count', dict(visible=True)),
+                               **_yaxis('Read count', dict(visible=True)),
                                'plot_bgcolor': plotly_background_color}],
                         label="Reads Histogram",
                         method="update"
@@ -638,9 +645,9 @@ def _pie_chart_graph(graph_name, count_sorted, color_palette, one_d_square, resu
                         method="update"
                     ),
                     dict(
-                        args=[{'visible': [False, False, True, False]},
+                        args=[{'visible': [False, False, False, True]},
                               {**_xaxis('Barcodes', dict(visible=True)),
-                               **_yaxis('Read count', dict(visible=True)),
+                               **_yaxis('Base count', dict(visible=True)),
                                'plot_bgcolor': plotly_background_color}],
                         label="Bases Histogram",
                         method="update"

toulligqc-2.5.5/toulligqc/version.py

@@ -0,0 +1 @@
+__version__ = '2.5.5'

{toulligqc-2.5.4 → toulligqc-2.5.5}/toulligqc.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: toulligqc
-Version: 2.5.4
+Version: 2.5.5
 Summary: A post sequencing QC tool for Oxford Nanopore sequencers
 Home-page: https://github.com/GenomicParisCentre/toulligQC
 Author: Genomic Paris Centre team

toulligqc-2.5.4/toulligqc/version.py

@@ -1 +0,0 @@
-__version__ = '2.5.4'