toolsandogh 0.3.1__tar.gz → 0.3.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/.github/workflows/release.yml +2 -2
  2. {toolsandogh-0.3.1/src/toolsandogh.egg-info → toolsandogh-0.3.2}/PKG-INFO +1 -1
  3. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_locate.py +5 -6
  4. {toolsandogh-0.3.1 → toolsandogh-0.3.2/src/toolsandogh.egg-info}/PKG-INFO +1 -1
  5. toolsandogh-0.3.2/src/toolsandogh.egg-info/scm_version.json +8 -0
  6. toolsandogh-0.3.1/src/toolsandogh.egg-info/scm_version.json +0 -8
  7. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/.github/workflows/ci.yml +0 -0
  8. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/.gitignore +0 -0
  9. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/.pre-commit-config.yaml +0 -0
  10. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/DESIGN.md +0 -0
  11. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/LICENSE +0 -0
  12. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/README.md +0 -0
  13. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/demos/demo_iscat_50nm_bead.py +0 -0
  14. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/pyproject.toml +0 -0
  15. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/setup.cfg +0 -0
  16. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/__init__.py +0 -0
  17. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_canonicalize_video.py +0 -0
  18. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_generate_video.py +0 -0
  19. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_link.py +0 -0
  20. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_load_video.py +0 -0
  21. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_rolling.py +0 -0
  22. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_rvt.py +0 -0
  23. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_simulate_particles.py +0 -0
  24. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_simulate_psf.py +0 -0
  25. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_store_video.py +0 -0
  26. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_validate_video.py +0 -0
  27. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/__init__.py +0 -0
  28. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/conftest.py +0 -0
  29. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_io.py +0 -0
  30. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_link.py +0 -0
  31. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_locate.py +0 -0
  32. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_rolling.py +0 -0
  33. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_simulate_particles.py +0 -0
  34. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/test_simulate_psf.py +0 -0
  35. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/tests/testfile.tiff +0 -0
  36. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh.egg-info/SOURCES.txt +0 -0
  37. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh.egg-info/dependency_links.txt +0 -0
  38. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh.egg-info/requires.txt +0 -0
  39. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh.egg-info/scm_file_list.json +0 -0
  40. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh.egg-info/top_level.txt +0 -0
  41. {toolsandogh-0.3.1 → toolsandogh-0.3.2}/uv.lock +0 -0
{toolsandogh-0.3.1 → toolsandogh-0.3.2}/.github/workflows/release.yml RENAMED
@@ -28,7 +28,7 @@ jobs:
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  enable-cache: true
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  python-version: "3.12"
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  - run: uv build -o dist
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- - uses: actions/upload-artifact@v6
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+ - uses: actions/upload-artifact@v7
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  with:
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  name: dist
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  path: dist/
@@ -46,7 +46,7 @@ jobs:
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  id-token: write # PyPI Trusted Publishing (OIDC)
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  contents: write # create GitHub Release
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  steps:
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- - uses: actions/download-artifact@v6
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+ - uses: actions/download-artifact@v8
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  with:
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  name: dist
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  path: dist/
{toolsandogh-0.3.1/src/toolsandogh.egg-info → toolsandogh-0.3.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: toolsandogh
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- Version: 0.3.1
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+ Version: 0.3.2
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  Summary: A collection of Python scripts for iSCAT microscopy data analysis
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  Author-email: Marco Heisig <marco.heisig@mpl.mpg.de>
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  License-Expression: GPL-3.0-or-later
{toolsandogh-0.3.1 → toolsandogh-0.3.2}/src/toolsandogh/_locate.py RENAMED
@@ -9,7 +9,6 @@ contrasts, and per-emitter statistics. The auxiliary function
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  Y, X)``.
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  """
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- import functools
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  from typing import Callable, Literal
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  import jax
@@ -360,7 +359,7 @@ def _detect_peaks_one_frame(
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  (1, 1, 1),
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  "same",
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  )
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- is_peak = (score == local_ext) & (score > float(min_contrast))
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+ is_peak = (score == local_ext) & (score > min_contrast)
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  elif sign == "negative":
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  local_ext = jax.lax.reduce_window(
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  score,
@@ -370,7 +369,7 @@ def _detect_peaks_one_frame(
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  (1, 1, 1),
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  "same",
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  )
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- is_peak = (score == local_ext) & (score < -float(min_contrast))
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+ is_peak = (score == local_ext) & (score < -min_contrast)
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  else: # "both"
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  local_max = jax.lax.reduce_window(
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  score,
@@ -388,8 +387,8 @@ def _detect_peaks_one_frame(
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  (1, 1, 1),
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  "same",
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  )
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- is_pos = (score == local_max) & (score > float(min_contrast))
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- is_neg = (score == local_min) & (score < -float(min_contrast))
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+ is_pos = (score == local_max) & (score > min_contrast)
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+ is_neg = (score == local_min) & (score < -min_contrast)
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  is_peak = is_pos | is_neg
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  coords = jnp.argwhere(is_peak) # (n, 3)
@@ -444,6 +443,7 @@ def _extract_stamp(
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  # ---------------------------------------------------------------------------
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+ @jax.jit(static_argnames=["iterations"])
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  def _fit_emitters_batch(
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  stamps: Float[Array, "n Pz Py Px"],
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  psf: Float[Array, "Pz Py Px"],
@@ -529,7 +529,6 @@ def _make_shifted_psf_2d(
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  return shifted_psf, 2
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- @functools.partial(jax.jit, static_argnames=("iterations", "is_3d"))
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  def _fit_one_emitter(
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  stamp: Float[Array, "Pz Py Px"],
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  psf: Float[Array, "Pz Py Px"],
{toolsandogh-0.3.1 → toolsandogh-0.3.2/src/toolsandogh.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: toolsandogh
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- Version: 0.3.1
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+ Version: 0.3.2
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  Summary: A collection of Python scripts for iSCAT microscopy data analysis
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  Author-email: Marco Heisig <marco.heisig@mpl.mpg.de>
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  License-Expression: GPL-3.0-or-later
toolsandogh-0.3.2/src/toolsandogh.egg-info/scm_version.json ADDED
@@ -0,0 +1,8 @@
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+ {
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+ "tag": "0.3.2",
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+ "distance": 0,
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+ "node": "gd9acb8d90441cb1fca0cc8c398a815769ffdc357",
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+ "dirty": false,
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+ "branch": "HEAD",
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+ "node_date": "2026-07-09"
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+ }
toolsandogh-0.3.1/src/toolsandogh.egg-info/scm_version.json DELETED
@@ -1,8 +0,0 @@
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- {
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- "tag": "0.3.1",
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- "distance": 0,
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- "node": "ge3b2e72fa7b3c57374fd48568db415c492c50b06",
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- "dirty": false,
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- "branch": "HEAD",
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- "node_date": "2026-07-08"
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- }
{toolsandogh-0.3.1 → toolsandogh-0.3.2}/.gitignore RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/DESIGN.md RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/LICENSE RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/README.md RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/pyproject.toml RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/setup.cfg RENAMED
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{toolsandogh-0.3.1 → toolsandogh-0.3.2}/uv.lock RENAMED
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