tomwer 1.3.24__tar.gz → 1.3.26__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {tomwer-1.3.24/tomwer.egg-info → tomwer-1.3.26}/PKG-INFO +2 -2
- tomwer-1.3.26/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +184 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/setup.cfg +1 -1
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/app/zstitching.py +0 -1
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/core/cluster/cluster.py +0 -9
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/core/process/reconstruction/nabu/utils.py +1 -2
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/cluster/slurm.py +0 -21
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/cluster/test/test_cluster.py +0 -1
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/reconstruction/axis/radioaxis.py +0 -1
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/stitching/stitching.py +8 -3
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/version.py +1 -1
- {tomwer-1.3.24 → tomwer-1.3.26/tomwer.egg-info}/PKG-INFO +2 -2
- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/requires.txt +1 -1
- tomwer-1.3.24/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +0 -184
- {tomwer-1.3.24 → tomwer-1.3.26}/LICENSE +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/MANIFEST.in +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/README.rst +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/managedprocess.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/settings.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/state_summary.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/EBS_tomo_listener.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/cast_volume.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth2.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/default_cor_search.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/hello_world_python_script.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/icat_publication.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_slice_reconstruction.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_slice_reconstruction_on_slurm.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_volume_local_reconstruction.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/using_saaxis_to_find_cor.ows +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurm.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurm.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/AdvancementOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataListOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataListenerOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataSelectorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataTransfertOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataValidatorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataWatcherOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/EmailOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/FilterOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXTomomillOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NotifierOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/TimerOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/VolumeSelector.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/advancement.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/advancement.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/concatenate_nxtomos.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/concatenate_nxtomos.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datadiscover.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datadiscover.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datalistener.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datalistener.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datawatcher.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/edf2nx.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/edf2nx.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/email.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/email.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/esrf.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/folder-transfert.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/image_key_upgrader.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/namefilter.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/namefilter.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/notification.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/notification.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/nxtomomill.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/progress.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanlist.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanselector.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanselector.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/single_tomo_obj.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/single_tomo_obj.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/time.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomoobjserie.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomoobjserie.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomwer.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/validator.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/validatorcrack.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumeselector.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumeselector.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumesymlink.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumesymlink.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/hammer.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/hammer.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/inspector.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/inspector.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_editor.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_editor.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_upgrader.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_upgrader.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/nx_tomo_editor.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/nx_tomo_editor.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/patch_dark_flat.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/patch_dark_flat.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_dark_flat_patch.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_image_key_upgrader.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_build.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_build.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_cluster.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_cluster.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_control.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_control.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_data_portal.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_debug_tools.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_debug_tools.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_edit.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_other.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_stitching.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_visu.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/PythonScriptOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/TomoObjsHub.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/__init__.py +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/__init__.py +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/axis.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/axis.svg +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/bricks.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/darkref.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/delta_beta_range.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/esrf.png +0 -0
- {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/nabu_2d.png +0 -0
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- {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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1
1
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Metadata-Version: 2.1
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2
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Name: tomwer
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-
Version: 1.3.
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3
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+
Version: 1.3.26
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4
4
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Summary: "tomography workflow tools"
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Home-page: https://gitlab.esrf.fr/tomotools/tomwer
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Author: data analysis unit
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@@ -25,7 +25,7 @@ Requires-Dist: numpy
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Requires-Dist: setuptools
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Requires-Dist: psutil
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Requires-Dist: silx[full]>=2.0
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-
Requires-Dist: tomoscan
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+
Requires-Dist: tomoscan<2.1,>=2.0.0a11
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Requires-Dist: nxtomo<1.3,>=1.2.3rc1
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Requires-Dist: nxtomomill<1.1,>=1.0dev
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Requires-Dist: processview>=1.3
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tomwer-1.3.26/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py
ADDED
@@ -0,0 +1,184 @@
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1
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# import logging
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2
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+
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3
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# from orangewidget import gui
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4
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# from orangewidget.settings import Setting
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5
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# from orangewidget.widget import Input, Output
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6
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# from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
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7
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+
# from silx.gui import qt
|
8
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# from typing import Optional
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9
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+
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# from tomwer.core.futureobject import FutureTomwerObject
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11
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# from tomwer.core.scan.scanbase import TomwerScanBase
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12
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+
# from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
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13
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+
# from tomwer.core.process.reconstruction.nabu.helical import (
|
14
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+
# NabuHelicalPrepareWeightsDouble,
|
15
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+
# )
|
16
|
+
# from tomwer.core.scan.nxtomoscan import NXtomoScan
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+
|
18
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+
# _logger = logging.getLogger(__name__)
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19
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+
|
20
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+
|
21
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# class NabuHelicalPrepareWeightsDoubleOW(
|
22
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# TomwerWithStackStack,
|
23
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+
# ewokstaskclass=NabuHelicalPrepareWeightsDouble,
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24
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# ):
|
25
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+
# """
|
26
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+
# widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
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+
|
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+
# :param parent: the parent widget
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29
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# """
|
30
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+
|
31
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# # note of this widget should be the one registered on the documentation
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+
# name = "helical prerate weights double"
|
33
|
+
# id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
|
34
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+
# description = "compute map of weights requested for nabu helical reconstruction"
|
35
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+
# icon = "icons/nabu_prepare_weights_double.svg"
|
36
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# priority = 199
|
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# keywords = [
|
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+
# "tomography",
|
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# "nabu",
|
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# "reconstruction",
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# "nabu-helical",
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# "helical",
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# "weights",
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# "prepare",
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# ]
|
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+
|
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# want_main_area = True
|
48
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+
# want_control_area = False
|
49
|
+
# resizing_enabled = True
|
50
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+
|
51
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+
# _ewoks_default_inputs = Setting(
|
52
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+
# {
|
53
|
+
# "data": None,
|
54
|
+
# "transition_width_vertical": 50,
|
55
|
+
# "transition_width_horizontal": 50,
|
56
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# "processes_file": "",
|
57
|
+
# "rotation_axis_position": 0,
|
58
|
+
# }
|
59
|
+
# )
|
60
|
+
|
61
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+
# _ewoks_inputs_to_hide_from_orange = (
|
62
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+
# "progress",
|
63
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+
# "processes_file",
|
64
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# "transition_width_vertical",
|
65
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+
# "transition_width_horizontal",
|
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+
# "rotation_axis_position",
|
67
|
+
# )
|
68
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+
|
69
|
+
# sigScanReady = qt.Signal(TomwerScanBase)
|
70
|
+
# "Signal emitted when a scan is ended"
|
71
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+
|
72
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+
# TIMEOUT = 30
|
73
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+
|
74
|
+
# class Inputs:
|
75
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+
# data = Input(
|
76
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+
# name="data",
|
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# type=TomwerScanBase,
|
78
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+
# doc="one scan to be process",
|
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+
# default=True,
|
80
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+
# multiple=False,
|
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# )
|
82
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+
|
83
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# class Outputs:
|
84
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+
# data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
|
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# future_tomo_obj = Output(
|
86
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+
# name="future_tomo_obj",
|
87
|
+
# type=FutureTomwerObject,
|
88
|
+
# doc="future object (process remotely)",
|
89
|
+
# )
|
90
|
+
|
91
|
+
# LOGGER = _logger
|
92
|
+
|
93
|
+
# def __init__(self, parent=None):
|
94
|
+
# super().__init__(parent)
|
95
|
+
# self.__scan = None
|
96
|
+
|
97
|
+
# # gui definition
|
98
|
+
# _layout = gui.vBox(self.mainArea, self.name).layout()
|
99
|
+
# self.widget = HelicalPrepareWeightsDouble(parent=self)
|
100
|
+
# _layout.addWidget(self.widget)
|
101
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+
|
102
|
+
# ## connect signal / slot
|
103
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+
# self.widget.sigConfigChanged.connect(self._updateSettings)
|
104
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+
|
105
|
+
# if isinstance(self.task_output_changed_callbacks, set):
|
106
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+
# self.task_output_changed_callbacks.add(self._notify_state)
|
107
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+
# elif isinstance(self.task_output_changed_callbacks, list):
|
108
|
+
# self.task_output_changed_callbacks.append(self._notify_state)
|
109
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+
# else:
|
110
|
+
# raise NotImplementedError
|
111
|
+
|
112
|
+
# ## handle settings
|
113
|
+
# self._loadSettings()
|
114
|
+
# self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
|
115
|
+
|
116
|
+
# def _updateSettings(self):
|
117
|
+
# config = self.widget.getConfiguration()
|
118
|
+
# for key in ("transition_width", "processes_file"):
|
119
|
+
# self._ewoks_default_inputs[key] = config[key] # pylint: disable=E1137
|
120
|
+
|
121
|
+
# @property
|
122
|
+
# def request_input(self):
|
123
|
+
# return self.__request_input
|
124
|
+
|
125
|
+
# @request_input.setter
|
126
|
+
# def request_input(self, request):
|
127
|
+
# self.__request_input = request
|
128
|
+
|
129
|
+
# def get_task_inputs(self):
|
130
|
+
# assert self.__scan is not None
|
131
|
+
# return {
|
132
|
+
# "data": self.__scan,
|
133
|
+
# "transition_width": self.widget.getConfiguration()["transition_width"],
|
134
|
+
# "processes_file": self.widget.getConfiguration()["processes_file"],
|
135
|
+
# }
|
136
|
+
|
137
|
+
# def handleNewSignals(self) -> None:
|
138
|
+
# """Invoked by the workflow signal propagation manager after all
|
139
|
+
# signals handlers have been called.
|
140
|
+
# """
|
141
|
+
# # for now we want to avoid propagation any processing.
|
142
|
+
# # task will be executed only when the user validates the dialog
|
143
|
+
# data = super().get_task_inputs().get("data", None)
|
144
|
+
# if data is not None:
|
145
|
+
# if not isinstance(data, NXtomoScan):
|
146
|
+
# raise TypeError(
|
147
|
+
# f"data is expected to be an instance of NXtomoScan. {type(data)} are not handled"
|
148
|
+
# )
|
149
|
+
# self.add(data.path)
|
150
|
+
|
151
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+
# def _loadSettings(self):
|
152
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+
# self.widget.setConfiguration(self._ewoks_default_inputs)
|
153
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+
|
154
|
+
# def _newTaskStarted(self):
|
155
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+
# try:
|
156
|
+
# task_executor = self.sender()
|
157
|
+
# scan = task_executor.current_task.inputs.data
|
158
|
+
# self.notify_on_going(scan)
|
159
|
+
# except Exception:
|
160
|
+
# pass
|
161
|
+
|
162
|
+
# def _notify_state(self):
|
163
|
+
# try:
|
164
|
+
# task_executor = self.sender()
|
165
|
+
# task_suceeded = task_executor.succeeded
|
166
|
+
# scan = task_executor.current_task.outputs.data
|
167
|
+
# if task_suceeded:
|
168
|
+
# self.notify_succeed(scan=scan)
|
169
|
+
# else:
|
170
|
+
# self.notify_failed(scan=scan)
|
171
|
+
# except Exception as e:
|
172
|
+
# _logger.error(f"failed to handle task finished callback. Raiseon is {e}")
|
173
|
+
|
174
|
+
# @Inputs.data
|
175
|
+
# def process_data(self, scan: Optional[TomwerScanBase]):
|
176
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+
# if scan is None:
|
177
|
+
# return
|
178
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+
# else:
|
179
|
+
# self.__scan = scan
|
180
|
+
# self.notify_pending(scan=scan)
|
181
|
+
# self.execute_ewoks_task()
|
182
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+
|
183
|
+
# def sizeHint(self) -> qt.QSize:
|
184
|
+
# return qt.QSize(650, 60)
|
@@ -56,7 +56,6 @@ class MainWidget(qt.QTabWidget):
|
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56
56
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"partition": settingsClass.PARTITION,
|
57
57
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"n_gpus": settingsClass.N_GPUS_PER_WORKER,
|
58
58
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"job_name": settingsClass.PROJECT_NAME,
|
59
|
-
"walltime": settingsClass.DEFAULT_WALLTIME,
|
60
59
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"python_venv": settingsClass.PYTHON_VENV,
|
61
60
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}
|
62
61
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)
|
@@ -48,7 +48,6 @@ class SlurmClusterConfiguration:
|
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48
48
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queue=_SlurmSettings.PARTITION,
|
49
49
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n_gpus=_SlurmSettings.N_GPUS_PER_WORKER,
|
50
50
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project_name=_SlurmSettings.PROJECT_NAME,
|
51
|
-
walltime=_SlurmSettings.DEFAULT_WALLTIME,
|
52
51
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python_venv=_SlurmSettings.PYTHON_VENV,
|
53
52
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n_jobs=_SlurmSettings.N_JOBS,
|
54
53
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modules_to_load: tuple = _SlurmSettings.MODULES_TO_LOAD,
|
@@ -60,7 +59,6 @@ class SlurmClusterConfiguration:
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60
59
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self._queue = queue
|
61
60
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self._n_gpus = n_gpus
|
62
61
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self._project_name = project_name
|
63
|
-
self._walltime = walltime
|
64
62
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self._python_venv = python_venv
|
65
63
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self._modules_to_load = modules_to_load
|
66
64
|
self._n_jobs = n_jobs
|
@@ -98,10 +96,6 @@ class SlurmClusterConfiguration:
|
|
98
96
|
def project_name(self):
|
99
97
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return self._project_name
|
100
98
|
|
101
|
-
@property
|
102
|
-
def walltime(self):
|
103
|
-
return self._walltime
|
104
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-
|
105
99
|
@property
|
106
100
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def python_venv(self):
|
107
101
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return self._python_venv
|
@@ -132,7 +126,6 @@ class SlurmClusterConfiguration:
|
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132
126
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"partition": self.queue,
|
133
127
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"n_gpus": self.n_gpus,
|
134
128
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"job_name": self.project_name,
|
135
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-
"walltime": self.walltime,
|
136
129
|
"python_venv": self.python_venv,
|
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130
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"modules": self.modules_to_load,
|
138
131
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"sbatch_extra_params": self.sbatch_extra_params,
|
@@ -157,8 +150,6 @@ class SlurmClusterConfiguration:
|
|
157
150
|
self._n_gpus = dict_["n_gpus"]
|
158
151
|
if "job_name" in dict_:
|
159
152
|
self._project_name = dict_["job_name"]
|
160
|
-
if "walltime" in dict_:
|
161
|
-
self._walltime = dict_["walltime"]
|
162
153
|
if "python_venv" in dict_:
|
163
154
|
self._python_venv = dict_["python_venv"]
|
164
155
|
modules = dict_.get("modules", None)
|
@@ -128,7 +128,6 @@ def get_nabu_resources_desc(scan: TomwerScanBase, method, workers=1) -> dict:
|
|
128
128
|
"partition": "gpu",
|
129
129
|
"memory_per_node": "90%",
|
130
130
|
"threads_per_node": "100%",
|
131
|
-
"walltime": "01:00:00",
|
132
131
|
}
|
133
132
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return res
|
134
133
|
|
@@ -305,7 +304,7 @@ def get_multi_cor_recons_volume_identifiers(
|
|
305
304
|
class _NabuMode(_Enum):
|
306
305
|
FULL_FIELD = "standard acquisition"
|
307
306
|
HALF_ACQ = "half acquisition"
|
308
|
-
HELICAL = "helical acquisition"
|
307
|
+
# HELICAL = "helical acquisition"
|
309
308
|
|
310
309
|
|
311
310
|
class _NabuStages(_Enum):
|
@@ -166,7 +166,6 @@ class SlurmSettingsWindow(qt.QMainWindow):
|
|
166
166
|
"partition": settingsClass.PARTITION,
|
167
167
|
"n_gpus": settingsClass.N_GPUS_PER_WORKER,
|
168
168
|
"job_name": settingsClass.PROJECT_NAME,
|
169
|
-
"walltime": settingsClass.DEFAULT_WALLTIME,
|
170
169
|
"python_venv": settingsClass.PYTHON_VENV,
|
171
170
|
"modules": settingsClass.MODULES_TO_LOAD,
|
172
171
|
}
|
@@ -261,11 +260,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
261
260
|
self._nJobsLabel.setVisible(jobLimitation is None)
|
262
261
|
self._nJobs.setVisible(jobLimitation is None)
|
263
262
|
|
264
|
-
# wall time
|
265
|
-
self._wallTimeQLE = qt.QLineEdit("", self)
|
266
|
-
self._wallTimeLabel = qt.QLabel("wall time", self)
|
267
|
-
self.layout().addRow(self._wallTimeLabel, self._wallTimeQLE)
|
268
|
-
|
269
263
|
# python exe / modules
|
270
264
|
self._preProcessingGroup = qt.QGroupBox("pre-processing", self)
|
271
265
|
self._preProcessingGroup.setLayout(qt.QFormLayout())
|
@@ -356,8 +350,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
356
350
|
self._sbatchAdvancedParameters.layout().addRow("-C (gpu card)", self._gpuCardCB)
|
357
351
|
|
358
352
|
# simplify gui
|
359
|
-
self._wallTimeLabel.hide()
|
360
|
-
self._wallTimeQLE.hide()
|
361
353
|
self._dashboardPort.hide()
|
362
354
|
self._dashboardPortLabel.hide()
|
363
355
|
self._jobName.hide()
|
@@ -376,7 +368,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
376
368
|
self._queue.setCurrentText(SlurmSettings.PARTITION)
|
377
369
|
self._nGpu.setValue(n_gpu)
|
378
370
|
self._jobName.setText(SlurmSettings.PROJECT_NAME)
|
379
|
-
self._wallTimeQLE.setText(SlurmSettings.DEFAULT_WALLTIME)
|
380
371
|
self._modulesCB.setChecked(True) # by default we go for modules
|
381
372
|
self._preProcessingModeChanged()
|
382
373
|
self._partitionChanged()
|
@@ -389,7 +380,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
389
380
|
self._queue.currentTextChanged.connect(self._configurationChanged)
|
390
381
|
self._nGpu.valueChanged.connect(self._configurationChanged)
|
391
382
|
self._jobName.editingFinished.connect(self._configurationChanged)
|
392
|
-
self._wallTimeQLE.editingFinished.connect(self._configurationChanged)
|
393
383
|
self._pythonVenv.editingFinished.connect(self._configurationChanged)
|
394
384
|
self._modulesQLE.editingFinished.connect(self._configurationChanged)
|
395
385
|
self._preProcessingButtonGroup.buttonClicked.connect(self._configurationChanged)
|
@@ -452,12 +442,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
452
442
|
def setProjectName(self, name):
|
453
443
|
self._jobName.setText(name)
|
454
444
|
|
455
|
-
def getWallTime(self):
|
456
|
-
return self._wallTimeQLE.text()
|
457
|
-
|
458
|
-
def setWallTime(self, walltime):
|
459
|
-
self._wallTimeQLE.setText(walltime)
|
460
|
-
|
461
445
|
def getPythonExe(self):
|
462
446
|
if self._sourceScriptCB.isChecked():
|
463
447
|
return self._pythonVenv.text()
|
@@ -548,10 +532,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
548
532
|
if project_name is not None:
|
549
533
|
self.setProjectName(project_name)
|
550
534
|
|
551
|
-
wall_time = config.get("walltime", None)
|
552
|
-
if wall_time is not None:
|
553
|
-
self.setWallTime(wall_time)
|
554
|
-
|
555
535
|
python_venv = config.get("python_venv", None)
|
556
536
|
if python_venv is not None:
|
557
537
|
python_venv = python_venv.rstrip("'").rstrip('"')
|
@@ -582,7 +562,6 @@ class SlurmSettingsWidget(qt.QWidget):
|
|
582
562
|
"partition": self.getQueue(),
|
583
563
|
"n_gpus": self.getNGPU(),
|
584
564
|
"job_name": self.getProjectName(),
|
585
|
-
"walltime": self.getWallTime(),
|
586
565
|
"sbatch_extra_params": self.getSBatchExtraParams(),
|
587
566
|
}
|
588
567
|
if self._modulesCB.isChecked():
|
@@ -1,5 +1,6 @@
|
|
1
1
|
import logging
|
2
2
|
import os
|
3
|
+
import shutil
|
3
4
|
import tempfile
|
4
5
|
import functools
|
5
6
|
|
@@ -399,7 +400,7 @@ class ZStitchingWindow(qt.QMainWindow):
|
|
399
400
|
# separator
|
400
401
|
toolbar.addSeparator()
|
401
402
|
|
402
|
-
#
|
403
|
+
# configuration level / mode
|
403
404
|
self.__configurationModesAction = qt.QAction(self)
|
404
405
|
self.__configurationModesAction.setCheckable(False)
|
405
406
|
menu = qt.QMenu(self)
|
@@ -602,6 +603,8 @@ class ZStitchingWindow(qt.QMainWindow):
|
|
602
603
|
self._callbackToSetSlurmConfig = callback
|
603
604
|
|
604
605
|
def close(self):
|
606
|
+
# remove folder used for preview
|
607
|
+
shutil.rmtree(self._previewFolder, ignore_errors=True)
|
605
608
|
self._widget.close()
|
606
609
|
# requested for the waiting plot update
|
607
610
|
super().close()
|
@@ -618,7 +621,6 @@ class ZStitchingWindow(qt.QMainWindow):
|
|
618
621
|
|
619
622
|
def getPreviewFolder(self):
|
620
623
|
if self._previewFolder is None:
|
621
|
-
# TODO: improve management of file: must be removed when the widget is closed...
|
622
624
|
self._previewFolder = tempfile.mkdtemp(prefix="tomwer_stitcher_preview")
|
623
625
|
return self._previewFolder
|
624
626
|
|
@@ -782,7 +784,6 @@ class ZStitchingWindow(qt.QMainWindow):
|
|
782
784
|
tomo_obj = existing_tomo_obj.get(tomo_obj_id, None)
|
783
785
|
if tomo_obj is None:
|
784
786
|
continue
|
785
|
-
# TODO: recuperer le tomo obj a partir de l'identifiant
|
786
787
|
if update_requested[0]:
|
787
788
|
tomo_obj.stitching_metadata.setPxPos(int(new_axis_0_pos), 0)
|
788
789
|
if update_requested[2]:
|
@@ -859,6 +860,10 @@ class ZStitchingWindow(qt.QMainWindow):
|
|
859
860
|
level >= ConfigurationLevel.ADVANCED
|
860
861
|
)
|
861
862
|
|
863
|
+
def close(self):
|
864
|
+
shutil.rmtree(self._previewFolder, ignore_errors=True)
|
865
|
+
super().close()
|
866
|
+
|
862
867
|
|
863
868
|
def concatenate_dict(dict_1, dict_2) -> dict:
|
864
869
|
"""update dict which has dict as values. And we want concatenate those values to"""
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: tomwer
|
3
|
-
Version: 1.3.
|
3
|
+
Version: 1.3.26
|
4
4
|
Summary: "tomography workflow tools"
|
5
5
|
Home-page: https://gitlab.esrf.fr/tomotools/tomwer
|
6
6
|
Author: data analysis unit
|
@@ -25,7 +25,7 @@ Requires-Dist: numpy
|
|
25
25
|
Requires-Dist: setuptools
|
26
26
|
Requires-Dist: psutil
|
27
27
|
Requires-Dist: silx[full]>=2.0
|
28
|
-
Requires-Dist: tomoscan
|
28
|
+
Requires-Dist: tomoscan<2.1,>=2.0.0a11
|
29
29
|
Requires-Dist: nxtomo<1.3,>=1.2.3rc1
|
30
30
|
Requires-Dist: nxtomomill<1.1,>=1.0dev
|
31
31
|
Requires-Dist: processview>=1.3
|
tomwer-1.3.24/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py
DELETED
@@ -1,184 +0,0 @@
|
|
1
|
-
import logging
|
2
|
-
|
3
|
-
from orangewidget import gui
|
4
|
-
from orangewidget.settings import Setting
|
5
|
-
from orangewidget.widget import Input, Output
|
6
|
-
from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
|
7
|
-
from silx.gui import qt
|
8
|
-
from typing import Optional
|
9
|
-
|
10
|
-
from tomwer.core.futureobject import FutureTomwerObject
|
11
|
-
from tomwer.core.scan.scanbase import TomwerScanBase
|
12
|
-
from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
|
13
|
-
from tomwer.core.process.reconstruction.nabu.helical import (
|
14
|
-
NabuHelicalPrepareWeightsDouble,
|
15
|
-
)
|
16
|
-
from tomwer.core.scan.nxtomoscan import NXtomoScan
|
17
|
-
|
18
|
-
_logger = logging.getLogger(__name__)
|
19
|
-
|
20
|
-
|
21
|
-
class NabuHelicalPrepareWeightsDoubleOW(
|
22
|
-
TomwerWithStackStack,
|
23
|
-
ewokstaskclass=NabuHelicalPrepareWeightsDouble,
|
24
|
-
):
|
25
|
-
"""
|
26
|
-
widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
|
27
|
-
|
28
|
-
:param parent: the parent widget
|
29
|
-
"""
|
30
|
-
|
31
|
-
# note of this widget should be the one registered on the documentation
|
32
|
-
name = "helical prerate weights double"
|
33
|
-
id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
|
34
|
-
description = "compute map of weights requested for nabu helical reconstruction"
|
35
|
-
icon = "icons/nabu_prepare_weights_double.svg"
|
36
|
-
priority = 199
|
37
|
-
keywords = [
|
38
|
-
"tomography",
|
39
|
-
"nabu",
|
40
|
-
"reconstruction",
|
41
|
-
"nabu-helical",
|
42
|
-
"helical",
|
43
|
-
"weights",
|
44
|
-
"prepare",
|
45
|
-
]
|
46
|
-
|
47
|
-
want_main_area = True
|
48
|
-
want_control_area = False
|
49
|
-
resizing_enabled = True
|
50
|
-
|
51
|
-
_ewoks_default_inputs = Setting(
|
52
|
-
{
|
53
|
-
"data": None,
|
54
|
-
"transition_width_vertical": 50,
|
55
|
-
"transition_width_horizontal": 50,
|
56
|
-
"processes_file": "",
|
57
|
-
"rotation_axis_position": 0,
|
58
|
-
}
|
59
|
-
)
|
60
|
-
|
61
|
-
_ewoks_inputs_to_hide_from_orange = (
|
62
|
-
"progress",
|
63
|
-
"processes_file",
|
64
|
-
"transition_width_vertical",
|
65
|
-
"transition_width_horizontal",
|
66
|
-
"rotation_axis_position",
|
67
|
-
)
|
68
|
-
|
69
|
-
sigScanReady = qt.Signal(TomwerScanBase)
|
70
|
-
"Signal emitted when a scan is ended"
|
71
|
-
|
72
|
-
TIMEOUT = 30
|
73
|
-
|
74
|
-
class Inputs:
|
75
|
-
data = Input(
|
76
|
-
name="data",
|
77
|
-
type=TomwerScanBase,
|
78
|
-
doc="one scan to be process",
|
79
|
-
default=True,
|
80
|
-
multiple=False,
|
81
|
-
)
|
82
|
-
|
83
|
-
class Outputs:
|
84
|
-
data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
|
85
|
-
future_tomo_obj = Output(
|
86
|
-
name="future_tomo_obj",
|
87
|
-
type=FutureTomwerObject,
|
88
|
-
doc="future object (process remotely)",
|
89
|
-
)
|
90
|
-
|
91
|
-
LOGGER = _logger
|
92
|
-
|
93
|
-
def __init__(self, parent=None):
|
94
|
-
super().__init__(parent)
|
95
|
-
self.__scan = None
|
96
|
-
|
97
|
-
# gui definition
|
98
|
-
_layout = gui.vBox(self.mainArea, self.name).layout()
|
99
|
-
self.widget = HelicalPrepareWeightsDouble(parent=self)
|
100
|
-
_layout.addWidget(self.widget)
|
101
|
-
|
102
|
-
## connect signal / slot
|
103
|
-
self.widget.sigConfigChanged.connect(self._updateSettings)
|
104
|
-
|
105
|
-
if isinstance(self.task_output_changed_callbacks, set):
|
106
|
-
self.task_output_changed_callbacks.add(self._notify_state)
|
107
|
-
elif isinstance(self.task_output_changed_callbacks, list):
|
108
|
-
self.task_output_changed_callbacks.append(self._notify_state)
|
109
|
-
else:
|
110
|
-
raise NotImplementedError
|
111
|
-
|
112
|
-
## handle settings
|
113
|
-
self._loadSettings()
|
114
|
-
self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
|
115
|
-
|
116
|
-
def _updateSettings(self):
|
117
|
-
config = self.widget.getConfiguration()
|
118
|
-
for key in ("transition_width", "processes_file"):
|
119
|
-
self._ewoks_default_inputs[key] = config[key] # pylint: disable=E1137
|
120
|
-
|
121
|
-
@property
|
122
|
-
def request_input(self):
|
123
|
-
return self.__request_input
|
124
|
-
|
125
|
-
@request_input.setter
|
126
|
-
def request_input(self, request):
|
127
|
-
self.__request_input = request
|
128
|
-
|
129
|
-
def get_task_inputs(self):
|
130
|
-
assert self.__scan is not None
|
131
|
-
return {
|
132
|
-
"data": self.__scan,
|
133
|
-
"transition_width": self.widget.getConfiguration()["transition_width"],
|
134
|
-
"processes_file": self.widget.getConfiguration()["processes_file"],
|
135
|
-
}
|
136
|
-
|
137
|
-
def handleNewSignals(self) -> None:
|
138
|
-
"""Invoked by the workflow signal propagation manager after all
|
139
|
-
signals handlers have been called.
|
140
|
-
"""
|
141
|
-
# for now we want to avoid propagation any processing.
|
142
|
-
# task will be executed only when the user validates the dialog
|
143
|
-
data = super().get_task_inputs().get("data", None)
|
144
|
-
if data is not None:
|
145
|
-
if not isinstance(data, NXtomoScan):
|
146
|
-
raise TypeError(
|
147
|
-
f"data is expected to be an instance of NXtomoScan. {type(data)} are not handled"
|
148
|
-
)
|
149
|
-
self.add(data.path)
|
150
|
-
|
151
|
-
def _loadSettings(self):
|
152
|
-
self.widget.setConfiguration(self._ewoks_default_inputs)
|
153
|
-
|
154
|
-
def _newTaskStarted(self):
|
155
|
-
try:
|
156
|
-
task_executor = self.sender()
|
157
|
-
scan = task_executor.current_task.inputs.data
|
158
|
-
self.notify_on_going(scan)
|
159
|
-
except Exception:
|
160
|
-
pass
|
161
|
-
|
162
|
-
def _notify_state(self):
|
163
|
-
try:
|
164
|
-
task_executor = self.sender()
|
165
|
-
task_suceeded = task_executor.succeeded
|
166
|
-
scan = task_executor.current_task.outputs.data
|
167
|
-
if task_suceeded:
|
168
|
-
self.notify_succeed(scan=scan)
|
169
|
-
else:
|
170
|
-
self.notify_failed(scan=scan)
|
171
|
-
except Exception as e:
|
172
|
-
_logger.error(f"failed to handle task finished callback. Raiseon is {e}")
|
173
|
-
|
174
|
-
@Inputs.data
|
175
|
-
def process_data(self, scan: Optional[TomwerScanBase]):
|
176
|
-
if scan is None:
|
177
|
-
return
|
178
|
-
else:
|
179
|
-
self.__scan = scan
|
180
|
-
self.notify_pending(scan=scan)
|
181
|
-
self.execute_ewoks_task()
|
182
|
-
|
183
|
-
def sizeHint(self) -> qt.QSize:
|
184
|
-
return qt.QSize(650, 60)
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|