tomwer 1.3.24__tar.gz → 1.3.26__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (792) hide show
  1. {tomwer-1.3.24/tomwer.egg-info → tomwer-1.3.26}/PKG-INFO +2 -2
  2. tomwer-1.3.26/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +184 -0
  3. {tomwer-1.3.24 → tomwer-1.3.26}/setup.cfg +1 -1
  4. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/app/zstitching.py +0 -1
  5. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/core/cluster/cluster.py +0 -9
  6. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/core/process/reconstruction/nabu/utils.py +1 -2
  7. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/cluster/slurm.py +0 -21
  8. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/cluster/test/test_cluster.py +0 -1
  9. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/reconstruction/axis/radioaxis.py +0 -1
  10. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/gui/stitching/stitching.py +8 -3
  11. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/version.py +1 -1
  12. {tomwer-1.3.24 → tomwer-1.3.26/tomwer.egg-info}/PKG-INFO +2 -2
  13. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/requires.txt +1 -1
  14. tomwer-1.3.24/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +0 -184
  15. {tomwer-1.3.24 → tomwer-1.3.26}/LICENSE +0 -0
  16. {tomwer-1.3.24 → tomwer-1.3.26}/MANIFEST.in +0 -0
  17. {tomwer-1.3.24 → tomwer-1.3.26}/README.rst +0 -0
  18. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/__init__.py +0 -0
  19. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/__init__.py +0 -0
  20. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/__init__.py +0 -0
  21. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/managedprocess.py +0 -0
  22. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/orange/settings.py +0 -0
  23. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/state_summary.py +0 -0
  24. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/EBS_tomo_listener.ows +0 -0
  25. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/__init__.py +0 -0
  26. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +0 -0
  27. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/cast_volume.ows +0 -0
  28. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +0 -0
  29. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth2.ows +0 -0
  30. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/default_cor_search.ows +0 -0
  31. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/hello_world_python_script.ows +0 -0
  32. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/icat_publication.ows +0 -0
  33. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_slice_reconstruction.ows +0 -0
  34. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_slice_reconstruction_on_slurm.ows +0 -0
  35. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_volume_local_reconstruction.ows +0 -0
  36. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +0 -0
  37. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/tutorials/using_saaxis_to_find_cor.ows +0 -0
  38. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/__init__.py +0 -0
  39. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +0 -0
  40. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +0 -0
  41. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/__init__.py +0 -0
  42. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurm.png +0 -0
  43. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurm.svg +0 -0
  44. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.png +0 -0
  45. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/cluster/icons/slurmobserver.svg +0 -0
  46. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/AdvancementOW.py +0 -0
  47. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +0 -0
  48. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataListOW.py +0 -0
  49. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataListenerOW.py +0 -0
  50. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataSelectorOW.py +0 -0
  51. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataTransfertOW.py +0 -0
  52. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataValidatorOW.py +0 -0
  53. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/DataWatcherOW.py +0 -0
  54. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +0 -0
  55. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/EmailOW.py +0 -0
  56. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/FilterOW.py +0 -0
  57. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py +0 -0
  58. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXTomomillOW.py +0 -0
  59. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +0 -0
  60. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/NotifierOW.py +0 -0
  61. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +0 -0
  62. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +0 -0
  63. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/TimerOW.py +0 -0
  64. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -0
  65. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/VolumeSelector.py +0 -0
  66. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -0
  67. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/__init__.py +0 -0
  68. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/advancement.png +0 -0
  69. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/advancement.svg +0 -0
  70. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/concatenate_nxtomos.png +0 -0
  71. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/concatenate_nxtomos.svg +0 -0
  72. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datadiscover.png +0 -0
  73. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datadiscover.svg +0 -0
  74. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datalistener.png +0 -0
  75. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datalistener.svg +0 -0
  76. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/datawatcher.svg +0 -0
  77. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/edf2nx.png +0 -0
  78. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/edf2nx.svg +0 -0
  79. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/email.png +0 -0
  80. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/email.svg +0 -0
  81. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/esrf.png +0 -0
  82. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/folder-transfert.svg +0 -0
  83. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/image_key_upgrader.png +0 -0
  84. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/namefilter.png +0 -0
  85. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/namefilter.svg +0 -0
  86. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/notification.png +0 -0
  87. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/notification.svg +0 -0
  88. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/nxtomomill.png +0 -0
  89. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +0 -0
  90. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/progress.svg +0 -0
  91. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
  92. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +0 -0
  93. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanlist.svg +0 -0
  94. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanselector.png +0 -0
  95. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/scanselector.svg +0 -0
  96. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/single_tomo_obj.png +0 -0
  97. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/single_tomo_obj.svg +0 -0
  98. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/time.png +0 -0
  99. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomoobjserie.png +0 -0
  100. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomoobjserie.svg +0 -0
  101. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/tomwer.png +0 -0
  102. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/validator.png +0 -0
  103. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/validatorcrack.png +0 -0
  104. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumeselector.png +0 -0
  105. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumeselector.svg +0 -0
  106. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumesymlink.png +0 -0
  107. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/control/icons/volumesymlink.svg +0 -0
  108. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +0 -0
  109. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +0 -0
  110. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/__init__.py +0 -0
  111. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/hammer.png +0 -0
  112. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/hammer.svg +0 -0
  113. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/inspector.png +0 -0
  114. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/debugtools/icons/inspector.svg +0 -0
  115. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +0 -0
  116. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +0 -0
  117. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +0 -0
  118. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +0 -0
  119. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/__init__.py +0 -0
  120. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_editor.png +0 -0
  121. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_editor.svg +0 -0
  122. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_upgrader.png +0 -0
  123. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/image_key_upgrader.svg +0 -0
  124. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/nx_tomo_editor.png +0 -0
  125. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/nx_tomo_editor.svg +0 -0
  126. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/patch_dark_flat.png +0 -0
  127. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/icons/patch_dark_flat.svg +0 -0
  128. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/__init__.py +0 -0
  129. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_dark_flat_patch.py +0 -0
  130. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py +0 -0
  131. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_image_key_upgrader.py +0 -0
  132. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -0
  133. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -0
  134. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -0
  135. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -0
  136. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/__init__.py +0 -0
  137. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
  138. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -0
  139. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.png +0 -0
  140. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.svg +0 -0
  141. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
  142. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -0
  143. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer.png +0 -0
  144. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_build.png +0 -0
  145. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_build.svg +0 -0
  146. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_cluster.png +0 -0
  147. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_cluster.svg +0 -0
  148. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_control.png +0 -0
  149. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_control.svg +0 -0
  150. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_data_portal.png +0 -0
  151. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_data_portal.svg +0 -0
  152. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_debug_tools.png +0 -0
  153. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_debug_tools.svg +0 -0
  154. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_edit.png +0 -0
  155. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_edit.svg +0 -0
  156. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_other.png +0 -0
  157. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_other.svg +0 -0
  158. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_stitching.png +0 -0
  159. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_stitching.svg +0 -0
  160. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_visu.png +0 -0
  161. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/icons/tomwer_visu.svg +0 -0
  162. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/PythonScriptOW.py +0 -0
  163. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/TomoObjsHub.py +0 -0
  164. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/__init__.py +0 -0
  165. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/icons/PythonScript.svg +0 -0
  166. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/icons/hub.png +0 -0
  167. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/other/icons/hub.svg +0 -0
  168. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +0 -0
  169. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +0 -0
  170. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +0 -0
  171. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +0 -0
  172. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +0 -0
  173. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +0 -0
  174. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +0 -0
  175. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +0 -0
  176. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/__init__.py +0 -0
  177. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/axis.png +0 -0
  178. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/axis.svg +0 -0
  179. {tomwer-1.3.24 → tomwer-1.3.26}/orangecontrib/tomwer/widgets/reconstruction/icons/bricks.png +0 -0
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  753. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/datalistener.py +0 -0
  754. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/datatransfert.py +0 -0
  755. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/imageloaderthread.py +0 -0
  756. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/rsyncmanager.py +0 -0
  757. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/saaxis.py +0 -0
  758. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/sadeltabeta.py +0 -0
  759. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/__init__.py +0 -0
  760. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/control/__init__.py +0 -0
  761. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/control/datalistener.py +0 -0
  762. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/edit/__init__.py +0 -0
  763. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/edit/darkflatpatch.py +0 -0
  764. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -0
  765. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/processingstack.py +0 -0
  766. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/__init__.py +0 -0
  767. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/axis.py +0 -0
  768. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/castvolume.py +0 -0
  769. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/dkrefcopy.py +0 -0
  770. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/nabu.py +0 -0
  771. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/normalization.py +0 -0
  772. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/saaxis.py +0 -0
  773. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/stacks/reconstruction/sadeltabeta.py +0 -0
  774. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/test/__init__.py +0 -0
  775. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/test/test_darkRefs.py +0 -0
  776. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/test/test_foldertransfer.py +0 -0
  777. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/utils/__init__.py +0 -0
  778. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/synctools/utils/scanstages.py +0 -0
  779. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/__init__.py +0 -0
  780. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/conftest.py +0 -0
  781. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/datasets.py +0 -0
  782. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/test_scripts.py +0 -0
  783. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/test_utils.py +0 -0
  784. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/tests/utils.py +0 -0
  785. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/third_part/WaitingOverlay.py +0 -0
  786. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/third_part/__init__.py +0 -0
  787. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer/utils.py +0 -0
  788. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/SOURCES.txt +0 -0
  789. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/dependency_links.txt +0 -0
  790. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/entry_points.txt +0 -0
  791. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/namespace_packages.txt +0 -0
  792. {tomwer-1.3.24 → tomwer-1.3.26}/tomwer.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: tomwer
3
- Version: 1.3.24
3
+ Version: 1.3.26
4
4
  Summary: "tomography workflow tools"
5
5
  Home-page: https://gitlab.esrf.fr/tomotools/tomwer
6
6
  Author: data analysis unit
@@ -25,7 +25,7 @@ Requires-Dist: numpy
25
25
  Requires-Dist: setuptools
26
26
  Requires-Dist: psutil
27
27
  Requires-Dist: silx[full]>=2.0
28
- Requires-Dist: tomoscan>=2.0.0a11
28
+ Requires-Dist: tomoscan<2.1,>=2.0.0a11
29
29
  Requires-Dist: nxtomo<1.3,>=1.2.3rc1
30
30
  Requires-Dist: nxtomomill<1.1,>=1.0dev
31
31
  Requires-Dist: processview>=1.3
@@ -0,0 +1,184 @@
1
+ # import logging
2
+
3
+ # from orangewidget import gui
4
+ # from orangewidget.settings import Setting
5
+ # from orangewidget.widget import Input, Output
6
+ # from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
7
+ # from silx.gui import qt
8
+ # from typing import Optional
9
+
10
+ # from tomwer.core.futureobject import FutureTomwerObject
11
+ # from tomwer.core.scan.scanbase import TomwerScanBase
12
+ # from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
13
+ # from tomwer.core.process.reconstruction.nabu.helical import (
14
+ # NabuHelicalPrepareWeightsDouble,
15
+ # )
16
+ # from tomwer.core.scan.nxtomoscan import NXtomoScan
17
+
18
+ # _logger = logging.getLogger(__name__)
19
+
20
+
21
+ # class NabuHelicalPrepareWeightsDoubleOW(
22
+ # TomwerWithStackStack,
23
+ # ewokstaskclass=NabuHelicalPrepareWeightsDouble,
24
+ # ):
25
+ # """
26
+ # widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
27
+
28
+ # :param parent: the parent widget
29
+ # """
30
+
31
+ # # note of this widget should be the one registered on the documentation
32
+ # name = "helical prerate weights double"
33
+ # id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
34
+ # description = "compute map of weights requested for nabu helical reconstruction"
35
+ # icon = "icons/nabu_prepare_weights_double.svg"
36
+ # priority = 199
37
+ # keywords = [
38
+ # "tomography",
39
+ # "nabu",
40
+ # "reconstruction",
41
+ # "nabu-helical",
42
+ # "helical",
43
+ # "weights",
44
+ # "prepare",
45
+ # ]
46
+
47
+ # want_main_area = True
48
+ # want_control_area = False
49
+ # resizing_enabled = True
50
+
51
+ # _ewoks_default_inputs = Setting(
52
+ # {
53
+ # "data": None,
54
+ # "transition_width_vertical": 50,
55
+ # "transition_width_horizontal": 50,
56
+ # "processes_file": "",
57
+ # "rotation_axis_position": 0,
58
+ # }
59
+ # )
60
+
61
+ # _ewoks_inputs_to_hide_from_orange = (
62
+ # "progress",
63
+ # "processes_file",
64
+ # "transition_width_vertical",
65
+ # "transition_width_horizontal",
66
+ # "rotation_axis_position",
67
+ # )
68
+
69
+ # sigScanReady = qt.Signal(TomwerScanBase)
70
+ # "Signal emitted when a scan is ended"
71
+
72
+ # TIMEOUT = 30
73
+
74
+ # class Inputs:
75
+ # data = Input(
76
+ # name="data",
77
+ # type=TomwerScanBase,
78
+ # doc="one scan to be process",
79
+ # default=True,
80
+ # multiple=False,
81
+ # )
82
+
83
+ # class Outputs:
84
+ # data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
85
+ # future_tomo_obj = Output(
86
+ # name="future_tomo_obj",
87
+ # type=FutureTomwerObject,
88
+ # doc="future object (process remotely)",
89
+ # )
90
+
91
+ # LOGGER = _logger
92
+
93
+ # def __init__(self, parent=None):
94
+ # super().__init__(parent)
95
+ # self.__scan = None
96
+
97
+ # # gui definition
98
+ # _layout = gui.vBox(self.mainArea, self.name).layout()
99
+ # self.widget = HelicalPrepareWeightsDouble(parent=self)
100
+ # _layout.addWidget(self.widget)
101
+
102
+ # ## connect signal / slot
103
+ # self.widget.sigConfigChanged.connect(self._updateSettings)
104
+
105
+ # if isinstance(self.task_output_changed_callbacks, set):
106
+ # self.task_output_changed_callbacks.add(self._notify_state)
107
+ # elif isinstance(self.task_output_changed_callbacks, list):
108
+ # self.task_output_changed_callbacks.append(self._notify_state)
109
+ # else:
110
+ # raise NotImplementedError
111
+
112
+ # ## handle settings
113
+ # self._loadSettings()
114
+ # self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
115
+
116
+ # def _updateSettings(self):
117
+ # config = self.widget.getConfiguration()
118
+ # for key in ("transition_width", "processes_file"):
119
+ # self._ewoks_default_inputs[key] = config[key] # pylint: disable=E1137
120
+
121
+ # @property
122
+ # def request_input(self):
123
+ # return self.__request_input
124
+
125
+ # @request_input.setter
126
+ # def request_input(self, request):
127
+ # self.__request_input = request
128
+
129
+ # def get_task_inputs(self):
130
+ # assert self.__scan is not None
131
+ # return {
132
+ # "data": self.__scan,
133
+ # "transition_width": self.widget.getConfiguration()["transition_width"],
134
+ # "processes_file": self.widget.getConfiguration()["processes_file"],
135
+ # }
136
+
137
+ # def handleNewSignals(self) -> None:
138
+ # """Invoked by the workflow signal propagation manager after all
139
+ # signals handlers have been called.
140
+ # """
141
+ # # for now we want to avoid propagation any processing.
142
+ # # task will be executed only when the user validates the dialog
143
+ # data = super().get_task_inputs().get("data", None)
144
+ # if data is not None:
145
+ # if not isinstance(data, NXtomoScan):
146
+ # raise TypeError(
147
+ # f"data is expected to be an instance of NXtomoScan. {type(data)} are not handled"
148
+ # )
149
+ # self.add(data.path)
150
+
151
+ # def _loadSettings(self):
152
+ # self.widget.setConfiguration(self._ewoks_default_inputs)
153
+
154
+ # def _newTaskStarted(self):
155
+ # try:
156
+ # task_executor = self.sender()
157
+ # scan = task_executor.current_task.inputs.data
158
+ # self.notify_on_going(scan)
159
+ # except Exception:
160
+ # pass
161
+
162
+ # def _notify_state(self):
163
+ # try:
164
+ # task_executor = self.sender()
165
+ # task_suceeded = task_executor.succeeded
166
+ # scan = task_executor.current_task.outputs.data
167
+ # if task_suceeded:
168
+ # self.notify_succeed(scan=scan)
169
+ # else:
170
+ # self.notify_failed(scan=scan)
171
+ # except Exception as e:
172
+ # _logger.error(f"failed to handle task finished callback. Raiseon is {e}")
173
+
174
+ # @Inputs.data
175
+ # def process_data(self, scan: Optional[TomwerScanBase]):
176
+ # if scan is None:
177
+ # return
178
+ # else:
179
+ # self.__scan = scan
180
+ # self.notify_pending(scan=scan)
181
+ # self.execute_ewoks_task()
182
+
183
+ # def sizeHint(self) -> qt.QSize:
184
+ # return qt.QSize(650, 60)
@@ -32,7 +32,7 @@ install_requires =
32
32
  setuptools
33
33
  psutil
34
34
  silx[full] >= 2.0
35
- tomoscan>=2.0.0a11
35
+ tomoscan>=2.0.0a11, <2.1
36
36
  nxtomo>=1.2.3rc1, <1.3
37
37
  nxtomomill>=1.0dev, <1.1
38
38
  processview>=1.3
@@ -56,7 +56,6 @@ class MainWidget(qt.QTabWidget):
56
56
  "partition": settingsClass.PARTITION,
57
57
  "n_gpus": settingsClass.N_GPUS_PER_WORKER,
58
58
  "job_name": settingsClass.PROJECT_NAME,
59
- "walltime": settingsClass.DEFAULT_WALLTIME,
60
59
  "python_venv": settingsClass.PYTHON_VENV,
61
60
  }
62
61
  )
@@ -48,7 +48,6 @@ class SlurmClusterConfiguration:
48
48
  queue=_SlurmSettings.PARTITION,
49
49
  n_gpus=_SlurmSettings.N_GPUS_PER_WORKER,
50
50
  project_name=_SlurmSettings.PROJECT_NAME,
51
- walltime=_SlurmSettings.DEFAULT_WALLTIME,
52
51
  python_venv=_SlurmSettings.PYTHON_VENV,
53
52
  n_jobs=_SlurmSettings.N_JOBS,
54
53
  modules_to_load: tuple = _SlurmSettings.MODULES_TO_LOAD,
@@ -60,7 +59,6 @@ class SlurmClusterConfiguration:
60
59
  self._queue = queue
61
60
  self._n_gpus = n_gpus
62
61
  self._project_name = project_name
63
- self._walltime = walltime
64
62
  self._python_venv = python_venv
65
63
  self._modules_to_load = modules_to_load
66
64
  self._n_jobs = n_jobs
@@ -98,10 +96,6 @@ class SlurmClusterConfiguration:
98
96
  def project_name(self):
99
97
  return self._project_name
100
98
 
101
- @property
102
- def walltime(self):
103
- return self._walltime
104
-
105
99
  @property
106
100
  def python_venv(self):
107
101
  return self._python_venv
@@ -132,7 +126,6 @@ class SlurmClusterConfiguration:
132
126
  "partition": self.queue,
133
127
  "n_gpus": self.n_gpus,
134
128
  "job_name": self.project_name,
135
- "walltime": self.walltime,
136
129
  "python_venv": self.python_venv,
137
130
  "modules": self.modules_to_load,
138
131
  "sbatch_extra_params": self.sbatch_extra_params,
@@ -157,8 +150,6 @@ class SlurmClusterConfiguration:
157
150
  self._n_gpus = dict_["n_gpus"]
158
151
  if "job_name" in dict_:
159
152
  self._project_name = dict_["job_name"]
160
- if "walltime" in dict_:
161
- self._walltime = dict_["walltime"]
162
153
  if "python_venv" in dict_:
163
154
  self._python_venv = dict_["python_venv"]
164
155
  modules = dict_.get("modules", None)
@@ -128,7 +128,6 @@ def get_nabu_resources_desc(scan: TomwerScanBase, method, workers=1) -> dict:
128
128
  "partition": "gpu",
129
129
  "memory_per_node": "90%",
130
130
  "threads_per_node": "100%",
131
- "walltime": "01:00:00",
132
131
  }
133
132
  return res
134
133
 
@@ -305,7 +304,7 @@ def get_multi_cor_recons_volume_identifiers(
305
304
  class _NabuMode(_Enum):
306
305
  FULL_FIELD = "standard acquisition"
307
306
  HALF_ACQ = "half acquisition"
308
- HELICAL = "helical acquisition"
307
+ # HELICAL = "helical acquisition"
309
308
 
310
309
 
311
310
  class _NabuStages(_Enum):
@@ -166,7 +166,6 @@ class SlurmSettingsWindow(qt.QMainWindow):
166
166
  "partition": settingsClass.PARTITION,
167
167
  "n_gpus": settingsClass.N_GPUS_PER_WORKER,
168
168
  "job_name": settingsClass.PROJECT_NAME,
169
- "walltime": settingsClass.DEFAULT_WALLTIME,
170
169
  "python_venv": settingsClass.PYTHON_VENV,
171
170
  "modules": settingsClass.MODULES_TO_LOAD,
172
171
  }
@@ -261,11 +260,6 @@ class SlurmSettingsWidget(qt.QWidget):
261
260
  self._nJobsLabel.setVisible(jobLimitation is None)
262
261
  self._nJobs.setVisible(jobLimitation is None)
263
262
 
264
- # wall time
265
- self._wallTimeQLE = qt.QLineEdit("", self)
266
- self._wallTimeLabel = qt.QLabel("wall time", self)
267
- self.layout().addRow(self._wallTimeLabel, self._wallTimeQLE)
268
-
269
263
  # python exe / modules
270
264
  self._preProcessingGroup = qt.QGroupBox("pre-processing", self)
271
265
  self._preProcessingGroup.setLayout(qt.QFormLayout())
@@ -356,8 +350,6 @@ class SlurmSettingsWidget(qt.QWidget):
356
350
  self._sbatchAdvancedParameters.layout().addRow("-C (gpu card)", self._gpuCardCB)
357
351
 
358
352
  # simplify gui
359
- self._wallTimeLabel.hide()
360
- self._wallTimeQLE.hide()
361
353
  self._dashboardPort.hide()
362
354
  self._dashboardPortLabel.hide()
363
355
  self._jobName.hide()
@@ -376,7 +368,6 @@ class SlurmSettingsWidget(qt.QWidget):
376
368
  self._queue.setCurrentText(SlurmSettings.PARTITION)
377
369
  self._nGpu.setValue(n_gpu)
378
370
  self._jobName.setText(SlurmSettings.PROJECT_NAME)
379
- self._wallTimeQLE.setText(SlurmSettings.DEFAULT_WALLTIME)
380
371
  self._modulesCB.setChecked(True) # by default we go for modules
381
372
  self._preProcessingModeChanged()
382
373
  self._partitionChanged()
@@ -389,7 +380,6 @@ class SlurmSettingsWidget(qt.QWidget):
389
380
  self._queue.currentTextChanged.connect(self._configurationChanged)
390
381
  self._nGpu.valueChanged.connect(self._configurationChanged)
391
382
  self._jobName.editingFinished.connect(self._configurationChanged)
392
- self._wallTimeQLE.editingFinished.connect(self._configurationChanged)
393
383
  self._pythonVenv.editingFinished.connect(self._configurationChanged)
394
384
  self._modulesQLE.editingFinished.connect(self._configurationChanged)
395
385
  self._preProcessingButtonGroup.buttonClicked.connect(self._configurationChanged)
@@ -452,12 +442,6 @@ class SlurmSettingsWidget(qt.QWidget):
452
442
  def setProjectName(self, name):
453
443
  self._jobName.setText(name)
454
444
 
455
- def getWallTime(self):
456
- return self._wallTimeQLE.text()
457
-
458
- def setWallTime(self, walltime):
459
- self._wallTimeQLE.setText(walltime)
460
-
461
445
  def getPythonExe(self):
462
446
  if self._sourceScriptCB.isChecked():
463
447
  return self._pythonVenv.text()
@@ -548,10 +532,6 @@ class SlurmSettingsWidget(qt.QWidget):
548
532
  if project_name is not None:
549
533
  self.setProjectName(project_name)
550
534
 
551
- wall_time = config.get("walltime", None)
552
- if wall_time is not None:
553
- self.setWallTime(wall_time)
554
-
555
535
  python_venv = config.get("python_venv", None)
556
536
  if python_venv is not None:
557
537
  python_venv = python_venv.rstrip("'").rstrip('"')
@@ -582,7 +562,6 @@ class SlurmSettingsWidget(qt.QWidget):
582
562
  "partition": self.getQueue(),
583
563
  "n_gpus": self.getNGPU(),
584
564
  "job_name": self.getProjectName(),
585
- "walltime": self.getWallTime(),
586
565
  "sbatch_extra_params": self.getSBatchExtraParams(),
587
566
  }
588
567
  if self._modulesCB.isChecked():
@@ -63,7 +63,6 @@ class TestSlurmWidget(TestCaseQt):
63
63
  "job_name": "tomwer_{scan}_-_{process}_-_{info}",
64
64
  "n_jobs": 1,
65
65
  "modules": ("tomotools/stable",),
66
- "walltime": "01:00:00",
67
66
  "sbatch_extra_params": {
68
67
  "export": "NONE",
69
68
  "gpu_card": None,
@@ -1148,7 +1148,6 @@ class _ShiftInformation(qt.QWidget):
1148
1148
  self.setPalette(palette)
1149
1149
 
1150
1150
  def _userEndEditing(self, *args, **kwargs):
1151
- print("user end editing")
1152
1151
  palette = self.palette()
1153
1152
  palette.setColor(
1154
1153
  self.backgroundRole(),
@@ -1,5 +1,6 @@
1
1
  import logging
2
2
  import os
3
+ import shutil
3
4
  import tempfile
4
5
  import functools
5
6
 
@@ -399,7 +400,7 @@ class ZStitchingWindow(qt.QMainWindow):
399
400
  # separator
400
401
  toolbar.addSeparator()
401
402
 
402
- # configuraiton level / mode
403
+ # configuration level / mode
403
404
  self.__configurationModesAction = qt.QAction(self)
404
405
  self.__configurationModesAction.setCheckable(False)
405
406
  menu = qt.QMenu(self)
@@ -602,6 +603,8 @@ class ZStitchingWindow(qt.QMainWindow):
602
603
  self._callbackToSetSlurmConfig = callback
603
604
 
604
605
  def close(self):
606
+ # remove folder used for preview
607
+ shutil.rmtree(self._previewFolder, ignore_errors=True)
605
608
  self._widget.close()
606
609
  # requested for the waiting plot update
607
610
  super().close()
@@ -618,7 +621,6 @@ class ZStitchingWindow(qt.QMainWindow):
618
621
 
619
622
  def getPreviewFolder(self):
620
623
  if self._previewFolder is None:
621
- # TODO: improve management of file: must be removed when the widget is closed...
622
624
  self._previewFolder = tempfile.mkdtemp(prefix="tomwer_stitcher_preview")
623
625
  return self._previewFolder
624
626
 
@@ -782,7 +784,6 @@ class ZStitchingWindow(qt.QMainWindow):
782
784
  tomo_obj = existing_tomo_obj.get(tomo_obj_id, None)
783
785
  if tomo_obj is None:
784
786
  continue
785
- # TODO: recuperer le tomo obj a partir de l'identifiant
786
787
  if update_requested[0]:
787
788
  tomo_obj.stitching_metadata.setPxPos(int(new_axis_0_pos), 0)
788
789
  if update_requested[2]:
@@ -859,6 +860,10 @@ class ZStitchingWindow(qt.QMainWindow):
859
860
  level >= ConfigurationLevel.ADVANCED
860
861
  )
861
862
 
863
+ def close(self):
864
+ shutil.rmtree(self._previewFolder, ignore_errors=True)
865
+ super().close()
866
+
862
867
 
863
868
  def concatenate_dict(dict_1, dict_2) -> dict:
864
869
  """update dict which has dict as values. And we want concatenate those values to"""
@@ -77,7 +77,7 @@ RELEASE_LEVEL_VALUE = {
77
77
 
78
78
  MAJOR = 1
79
79
  MINOR = 3
80
- MICRO = 24
80
+ MICRO = 26
81
81
  RELEV = "final" # <16
82
82
  SERIAL = 0 # <16
83
83
 
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: tomwer
3
- Version: 1.3.24
3
+ Version: 1.3.26
4
4
  Summary: "tomography workflow tools"
5
5
  Home-page: https://gitlab.esrf.fr/tomotools/tomwer
6
6
  Author: data analysis unit
@@ -25,7 +25,7 @@ Requires-Dist: numpy
25
25
  Requires-Dist: setuptools
26
26
  Requires-Dist: psutil
27
27
  Requires-Dist: silx[full]>=2.0
28
- Requires-Dist: tomoscan>=2.0.0a11
28
+ Requires-Dist: tomoscan<2.1,>=2.0.0a11
29
29
  Requires-Dist: nxtomo<1.3,>=1.2.3rc1
30
30
  Requires-Dist: nxtomomill<1.1,>=1.0dev
31
31
  Requires-Dist: processview>=1.3
@@ -2,7 +2,7 @@ numpy
2
2
  setuptools
3
3
  psutil
4
4
  silx[full]>=2.0
5
- tomoscan>=2.0.0a11
5
+ tomoscan<2.1,>=2.0.0a11
6
6
  nxtomo<1.3,>=1.2.3rc1
7
7
  nxtomomill<1.1,>=1.0dev
8
8
  processview>=1.3
@@ -1,184 +0,0 @@
1
- import logging
2
-
3
- from orangewidget import gui
4
- from orangewidget.settings import Setting
5
- from orangewidget.widget import Input, Output
6
- from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
7
- from silx.gui import qt
8
- from typing import Optional
9
-
10
- from tomwer.core.futureobject import FutureTomwerObject
11
- from tomwer.core.scan.scanbase import TomwerScanBase
12
- from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
13
- from tomwer.core.process.reconstruction.nabu.helical import (
14
- NabuHelicalPrepareWeightsDouble,
15
- )
16
- from tomwer.core.scan.nxtomoscan import NXtomoScan
17
-
18
- _logger = logging.getLogger(__name__)
19
-
20
-
21
- class NabuHelicalPrepareWeightsDoubleOW(
22
- TomwerWithStackStack,
23
- ewokstaskclass=NabuHelicalPrepareWeightsDouble,
24
- ):
25
- """
26
- widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
27
-
28
- :param parent: the parent widget
29
- """
30
-
31
- # note of this widget should be the one registered on the documentation
32
- name = "helical prerate weights double"
33
- id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
34
- description = "compute map of weights requested for nabu helical reconstruction"
35
- icon = "icons/nabu_prepare_weights_double.svg"
36
- priority = 199
37
- keywords = [
38
- "tomography",
39
- "nabu",
40
- "reconstruction",
41
- "nabu-helical",
42
- "helical",
43
- "weights",
44
- "prepare",
45
- ]
46
-
47
- want_main_area = True
48
- want_control_area = False
49
- resizing_enabled = True
50
-
51
- _ewoks_default_inputs = Setting(
52
- {
53
- "data": None,
54
- "transition_width_vertical": 50,
55
- "transition_width_horizontal": 50,
56
- "processes_file": "",
57
- "rotation_axis_position": 0,
58
- }
59
- )
60
-
61
- _ewoks_inputs_to_hide_from_orange = (
62
- "progress",
63
- "processes_file",
64
- "transition_width_vertical",
65
- "transition_width_horizontal",
66
- "rotation_axis_position",
67
- )
68
-
69
- sigScanReady = qt.Signal(TomwerScanBase)
70
- "Signal emitted when a scan is ended"
71
-
72
- TIMEOUT = 30
73
-
74
- class Inputs:
75
- data = Input(
76
- name="data",
77
- type=TomwerScanBase,
78
- doc="one scan to be process",
79
- default=True,
80
- multiple=False,
81
- )
82
-
83
- class Outputs:
84
- data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
85
- future_tomo_obj = Output(
86
- name="future_tomo_obj",
87
- type=FutureTomwerObject,
88
- doc="future object (process remotely)",
89
- )
90
-
91
- LOGGER = _logger
92
-
93
- def __init__(self, parent=None):
94
- super().__init__(parent)
95
- self.__scan = None
96
-
97
- # gui definition
98
- _layout = gui.vBox(self.mainArea, self.name).layout()
99
- self.widget = HelicalPrepareWeightsDouble(parent=self)
100
- _layout.addWidget(self.widget)
101
-
102
- ## connect signal / slot
103
- self.widget.sigConfigChanged.connect(self._updateSettings)
104
-
105
- if isinstance(self.task_output_changed_callbacks, set):
106
- self.task_output_changed_callbacks.add(self._notify_state)
107
- elif isinstance(self.task_output_changed_callbacks, list):
108
- self.task_output_changed_callbacks.append(self._notify_state)
109
- else:
110
- raise NotImplementedError
111
-
112
- ## handle settings
113
- self._loadSettings()
114
- self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
115
-
116
- def _updateSettings(self):
117
- config = self.widget.getConfiguration()
118
- for key in ("transition_width", "processes_file"):
119
- self._ewoks_default_inputs[key] = config[key] # pylint: disable=E1137
120
-
121
- @property
122
- def request_input(self):
123
- return self.__request_input
124
-
125
- @request_input.setter
126
- def request_input(self, request):
127
- self.__request_input = request
128
-
129
- def get_task_inputs(self):
130
- assert self.__scan is not None
131
- return {
132
- "data": self.__scan,
133
- "transition_width": self.widget.getConfiguration()["transition_width"],
134
- "processes_file": self.widget.getConfiguration()["processes_file"],
135
- }
136
-
137
- def handleNewSignals(self) -> None:
138
- """Invoked by the workflow signal propagation manager after all
139
- signals handlers have been called.
140
- """
141
- # for now we want to avoid propagation any processing.
142
- # task will be executed only when the user validates the dialog
143
- data = super().get_task_inputs().get("data", None)
144
- if data is not None:
145
- if not isinstance(data, NXtomoScan):
146
- raise TypeError(
147
- f"data is expected to be an instance of NXtomoScan. {type(data)} are not handled"
148
- )
149
- self.add(data.path)
150
-
151
- def _loadSettings(self):
152
- self.widget.setConfiguration(self._ewoks_default_inputs)
153
-
154
- def _newTaskStarted(self):
155
- try:
156
- task_executor = self.sender()
157
- scan = task_executor.current_task.inputs.data
158
- self.notify_on_going(scan)
159
- except Exception:
160
- pass
161
-
162
- def _notify_state(self):
163
- try:
164
- task_executor = self.sender()
165
- task_suceeded = task_executor.succeeded
166
- scan = task_executor.current_task.outputs.data
167
- if task_suceeded:
168
- self.notify_succeed(scan=scan)
169
- else:
170
- self.notify_failed(scan=scan)
171
- except Exception as e:
172
- _logger.error(f"failed to handle task finished callback. Raiseon is {e}")
173
-
174
- @Inputs.data
175
- def process_data(self, scan: Optional[TomwerScanBase]):
176
- if scan is None:
177
- return
178
- else:
179
- self.__scan = scan
180
- self.notify_pending(scan=scan)
181
- self.execute_ewoks_task()
182
-
183
- def sizeHint(self) -> qt.QSize:
184
- return qt.QSize(650, 60)
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File without changes
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