tomwer 1.2.0a3__tar.gz → 1.2.0a4__tar.gz

{tomwer-1.2.0a3/tomwer.egg-info → tomwer-1.2.0a4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: tomwer
-Version: 1.2.0a3
+Version: 1.2.0a4
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: data analysis unit

tomwer-1.2.0a4/orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py

@@ -0,0 +1,169 @@
+# import logging
+
+# from orangewidget import gui
+# from orangewidget.settings import Setting
+# from orangewidget.widget import Input, Output
+# from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
+# from silx.gui import qt
+# from typing import Optional
+
+# from tomwer.core.futureobject import FutureTomwerObject
+# from tomwer.core.scan.scanbase import TomwerScanBase
+# from tomwer.gui.reconstruction.nabu.helical import HelicalPrepareWeightsDouble
+# from tomwer.core.process.reconstruction.nabu.helical import (
+#     NabuHelicalPrepareWeightsDouble,
+# )
+# from tomwer.core.scan.hdf5scan import HDF5TomoScan
+
+# _logger = logging.getLogger(__name__)
+
+
+# class NabuHelicalPrepareWeightsDoubleOW(
+#     TomwerWithStackStack,
+#     ewokstaskclass=NabuHelicalPrepareWeightsDouble,
+# ):
+#     """
+#     widget used to call the `nabu-helical-prepare-weights-double` application on a dedicated thread. It define weights map and double flat field.
+
+#     :param parent: the parent widget
+#     """
+
+#     # note of this widget should be the one registered on the documentation
+#     name = "helical prerate weights double"
+#     id = "orangecontrib.tomwer.widgets.reconstruction.NabuHelicalPrepareWeightsDoubleOW.NabuHelicalPrepareWeightsDoubleOW"
+#     description = "compute map of weights requested for nabu helical reconstruction"
+#     icon = "icons/nabu_prepare_weights_double.svg"
+#     priority = 199
+#     keywords = [
+#         "tomography",
+#         "nabu",
+#         "reconstruction",
+#         "nabu-helical",
+#         "helical",
+#         "weights",
+#         "prepare",
+#     ]
+
+#     want_main_area = True
+#     want_control_area = False
+#     resizing_enabled = True
+
+#     _ewoks_default_inputs = Setting(
+#         {
+#             "data": None,
+#             "transition_width": 50,
+#             "processes_file": "",
+#         }
+#     )
+
+#     sigScanReady = qt.Signal(TomwerScanBase)
+#     "Signal emitted when a scan is ended"
+
+#     TIMEOUT = 30
+
+#     class Inputs:
+#         data = Input(
+#             name="data",
+#             type=TomwerScanBase,
+#             doc="one scan to be process",
+#             default=True,
+#             multiple=False,
+#         )
+
+#     class Outputs:
+#         data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
+#         future_tomo_obj = Output(
+#             name="future_tomo_obj",
+#             type=FutureTomwerObject,
+#             doc="future object (process remotely)",
+#         )
+
+#     LOGGER = _logger
+
+#     def __init__(self, parent=None):
+#         super().__init__(parent)
+#         self.__scan = None
+
+#         # gui definition
+#         _layout = gui.vBox(self.mainArea, self.name).layout()
+#         self.widget = HelicalPrepareWeightsDouble(parent=self)
+#         _layout.addWidget(self.widget)
+
+#         ## connect signal / slot
+#         self.widget.sigConfigChanged.connect(self._updateSettings)
+
+#         self.task_output_changed_callbacks.add(self._notify_state)
+
+#         ## handle settings
+#         self._loadSettings()
+#         self.task_executor_queue.sigComputationStarted.connect(self._newTaskStarted)
+
+#     def _updateSettings(self):
+#         config = self.widget.getConfiguration()
+#         for key in ("transition_width", "processes_file"):
+#             self._ewoks_default_inputs[key] = config[key]  # pylint: disable=E1137
+
+#     @property
+#     def request_input(self):
+#         return self.__request_input
+
+#     @request_input.setter
+#     def request_input(self, request):
+#         self.__request_input = request
+
+#     def get_task_inputs(self):
+#         assert self.__scan is not None
+#         return {
+#             "data": self.__scan,
+#             "transition_width": self.widget.getConfiguration()["transition_width"],
+#             "processes_file": self.widget.getConfiguration()["processes_file"],
+#         }
+
+#     def handleNewSignals(self) -> None:
+#         """Invoked by the workflow signal propagation manager after all
+#         signals handlers have been called.
+#         """
+#         # for now we want to avoid propagation any processing.
+#         # task will be executed only when the user validates the dialog
+#         data = super().get_task_inputs().get("data", None)
+#         if data is not None:
+#             if not isinstance(data, HDF5TomoScan):
+#                 raise TypeError(
+#                     f"data is expected to be an instance of HDF5TomoScan. {type(data)} are not handled"
+#                 )
+#             self.add(data.path)
+
+#     def _loadSettings(self):
+#         self.widget.setConfiguration(self._ewoks_default_inputs)
+
+#     def _newTaskStarted(self):
+#         try:
+#             task_executor = self.sender()
+#             scan = task_executor.current_task.inputs.data
+#             self.notify_on_going(scan)
+#         except Exception:
+#             pass
+
+#     def _notify_state(self):
+#         try:
+#             task_executor = self.sender()
+#             task_suceeded = task_executor.succeeded
+#             scan = task_executor.current_task.outputs.data
+#             if task_suceeded:
+#                 self.notify_succeed(scan=scan)
+#             else:
+#                 self.notify_failed(scan=scan)
+#         except Exception as e:
+#             _logger.error(f"failed to handle task finished callback. Raiseon is {e}")
+
+#     @Inputs.data
+#     def process_data(self, scan: Optional[TomwerScanBase]):
+#         if scan is None:
+#             return
+#         else:
+#             self.__scan = scan
+#             self.notify_pending(scan=scan)
+#             self.execute_ewoks_task()
+
+#     def sizeHint(self) -> qt.QSize:
+#         return qt.QSize(650, 60)

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer/app/imagekeyeditor.py

@@ -85,6 +85,7 @@ def main(argv):
     options.scan_path = options.scan_path.rstrip(os.path.sep)
 
     widget = ImageKeyDialog(parent=None)
+    widget.setWindowFlags(qt.Qt.Window)
     widget.setScan(scan)
     widget.setWindowTitle("Image key editor")
     widget.setWindowIcon(icons.getQIcon("tomwer"))

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer/app/imagekeyupgrader.py

@@ -94,6 +94,8 @@ def main(argv):
     options.scan_path = options.scan_path.rstrip(os.path.sep)
 
     widget = ImageKeyUpgraderDialog(parent=None)
+    widget.setWindowFlags(qt.Qt.Window)
+
     widget.setScan(scan)
     widget.setWindowTitle("Image key upgrader")
     widget.setWindowIcon(icons.getQIcon("tomwer"))

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer/app/nxtomoeditor.py

@@ -83,6 +83,8 @@ def main(argv):
         return
 
     dialog = NXtomoEditorDialog()
+    dialog.setWindowFlags(qt.Qt.Window)
+
     dialog.setScan(scan)
     dialog.show()
     splash.finish(dialog)

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer/app/zstitching.py

@@ -257,6 +257,7 @@ def main(argv):
     timer.timeout.connect(lambda: None)
 
     window = MainWindow()
+    window.setWindowFlags(qt.Qt.Window)
 
     window.show()
     from sluurp.utils import has_sbatch_available

tomwer-1.2.0a4/tomwer/resources/gui/icons/esrf_1.svg

@@ -0,0 +1,307 @@
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+   sodipodi:docname="esrf_1.svg"
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tomwer-1.2.0a4/tomwer/resources/gui/icons/triangle.svg

@@ -0,0 +1,80 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+   width="48"
+   height="48"
+   viewBox="0 0 12.7 12.7"
+   version="1.1"
+   id="svg1097"
+   inkscape:version="1.2.2 (b0a8486541, 2022-12-01)"
+   sodipodi:docname="triangle.svg"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:svg="http://www.w3.org/2000/svg">
+  <sodipodi:namedview
+     id="namedview1099"
+     pagecolor="#ffffff"
+     bordercolor="#000000"
+     borderopacity="0.25"
+     inkscape:showpageshadow="2"
+     inkscape:pageopacity="0.0"
+     inkscape:pagecheckerboard="0"
+     inkscape:deskcolor="#d1d1d1"
+     inkscape:document-units="mm"
+     showgrid="false"
+     inkscape:zoom="9.5144352"
+     inkscape:cx="29.166208"
+     inkscape:cy="27.852415"
+     inkscape:window-width="1920"
+     inkscape:window-height="1163"
+     inkscape:window-x="1920"
+     inkscape:window-y="0"
+     inkscape:window-maximized="1"
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+  <defs
+     id="defs1094" />
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1">
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
+       d="M 1.8939624,10.526614 10.57789,10.508604 10.61321,2.0330588 Z"
+       id="path1281" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
+       d="M 4.5730925,8.0439775 5.0764382,8.5595639"
+       id="path1381-3" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
+       d="M 5.5291259,7.0902652 6.0324716,7.6058516"
+       id="path1381-6" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
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+       id="path1381-7" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
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+       id="path1381-5" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
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+    <path
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+    <path
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+       d="M 3.5387896,9.0166385 4.0421353,9.5322249"
+       id="path1381" />
+    <path
+       style="fill:#ffffff;stroke:#000000;stroke-width:0.4;stroke-linejoin:round"
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+</svg>

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer/version.py

@@ -79,7 +79,7 @@ MAJOR = 1
 MINOR = 2
 MICRO = 0
 RELEV = "alpha"  # <16
-SERIAL = 3  # <16
+SERIAL = 4  # <16
 
 date = __date__
 

{tomwer-1.2.0a3 → tomwer-1.2.0a4/tomwer.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: tomwer
-Version: 1.2.0a3
+Version: 1.2.0a4
 Summary: "tomography workflow tools"
 Home-page: https://gitlab.esrf.fr/tomotools/tomwer
 Author: data analysis unit

{tomwer-1.2.0a3 → tomwer-1.2.0a4}/tomwer.egg-info/SOURCES.txt

@@ -635,6 +635,7 @@ tomwer/resources/gui/icons/datalistener_deactivate.png
 tomwer/resources/gui/icons/datalistener_deactivate.svg
 tomwer/resources/gui/icons/delta_beta.png
 tomwer/resources/gui/icons/delta_beta.svg
+tomwer/resources/gui/icons/esrf_1.svg
 tomwer/resources/gui/icons/exit.png
 tomwer/resources/gui/icons/exit.svg
 tomwer/resources/gui/icons/full_screen.png
@@ -711,6 +712,7 @@ tomwer/resources/gui/icons/stitching_modeRefine.svg
 tomwer/resources/gui/icons/switch.png
 tomwer/resources/gui/icons/tomwer.png
 tomwer/resources/gui/icons/tomwer_large.png
+tomwer/resources/gui/icons/triangle.svg
 tomwer/resources/gui/icons/unlocked.png
 tomwer/resources/gui/icons/unlocked.svg
 tomwer/resources/gui/icons/unsharp_mask.png