tomwer 0.2.0a1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (330) hide show
  1. users/payno/.local/share/virtualenvs/tomwer_venc/bin/tomwer +12 -0
  2. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/__init__.py +8 -0
  3. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/__pycache__/__init__.cpython-37.pyc +0 -0
  4. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/__pycache__/setup.cpython-37.pyc +0 -0
  5. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/setup.py +43 -0
  6. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/OrangeWorkflowTest.py +318 -0
  7. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/TestAcquisition.py +253 -0
  8. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__init__.py +49 -0
  9. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/OrangeWorkflowTest.cpython-37.pyc +0 -0
  10. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/TestAcquisition.cpython-37.pyc +0 -0
  11. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/__init__.cpython-37.pyc +0 -0
  12. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/test_dark_flat_field.cpython-37.pyc +0 -0
  13. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/test_scanlist_ftserie.cpython-37.pyc +0 -0
  14. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/test_scanlist_samplemoved.cpython-37.pyc +0 -0
  15. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/__pycache__/test_workflows.cpython-37.pyc +0 -0
  16. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/test_dark_flat_field.py +151 -0
  17. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/test_scanlist_ftserie.py +212 -0
  18. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/test_scanlist_samplemoved.py +93 -0
  19. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/test/test_workflows.py +542 -0
  20. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/DarkRefAndCopyWidget.py +97 -0
  21. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/FolderTransfertWidget.py +83 -0
  22. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/FtseriesWidget.py +103 -0
  23. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/ImageStackViewerWidget.py +107 -0
  24. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/OWSampleMovedWidget.py +105 -0
  25. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/ScanListWidget.py +194 -0
  26. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/ScanSelectorOW.py +73 -0
  27. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/ScanValidatorWidget.py +319 -0
  28. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/SliceStackOW.py +86 -0
  29. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/TomoDirWidget.py +121 -0
  30. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/TomoGUIprojectWidget.py +110 -0
  31. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/TomoGUIreconsWidget.py +130 -0
  32. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__init__.py +58 -0
  33. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/DarkRefAndCopyWidget.cpython-37.pyc +0 -0
  34. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/FolderTransfertWidget.cpython-37.pyc +0 -0
  35. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/FtseriesWidget.cpython-37.pyc +0 -0
  36. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/ImageStackViewerWidget.cpython-37.pyc +0 -0
  37. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/OWSampleMovedWidget.cpython-37.pyc +0 -0
  38. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/ScanListWidget.cpython-37.pyc +0 -0
  39. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/ScanSelectorOW.cpython-37.pyc +0 -0
  40. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/ScanValidatorWidget.cpython-37.pyc +0 -0
  41. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/SliceStackOW.cpython-37.pyc +0 -0
  42. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/TomoDirWidget.cpython-37.pyc +0 -0
  43. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/TomoGUIprojectWidget.cpython-37.pyc +0 -0
  44. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/TomoGUIreconsWidget.cpython-37.pyc +0 -0
  45. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/__init__.cpython-37.pyc +0 -0
  46. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/__pycache__/utils.cpython-37.pyc +0 -0
  47. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/__init__.py +119 -0
  48. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/__pycache__/__init__.cpython-37.pyc +0 -0
  49. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/bricks.png +0 -0
  50. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/darkref.png +0 -0
  51. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/darkref.svg +172 -0
  52. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/esrf.png +0 -0
  53. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/eye.png +0 -0
  54. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/folder-transfert.svg +118 -0
  55. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/hourglass.npy +0 -0
  56. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/imageNotFound.npy +0 -0
  57. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/progress.svg +157 -0
  58. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/refCopy.png +0 -0
  59. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/refCopy.svg +254 -0
  60. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/sampleMoved.png +0 -0
  61. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/sampleMoved.svg +98 -0
  62. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/scanlist.svg +250 -0
  63. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/scanselector.png +0 -0
  64. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/scanselector.svg +269 -0
  65. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/slicesstack.png +0 -0
  66. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/slicesstack.svg +234 -0
  67. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/tomodir.svg +258 -0
  68. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/tomogui.png +0 -0
  69. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/tomwer.png +0 -0
  70. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/icons/validator.png +0 -0
  71. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__init__.py +48 -0
  72. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/__init__.cpython-37.pyc +0 -0
  73. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_darkref.cpython-37.pyc +0 -0
  74. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_foldertransfert.cpython-37.pyc +0 -0
  75. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_ftseries.cpython-37.pyc +0 -0
  76. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_scanvalidator.cpython-37.pyc +0 -0
  77. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_tomodir.cpython-37.pyc +0 -0
  78. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/__pycache__/test_viewer.cpython-37.pyc +0 -0
  79. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_darkref.py +273 -0
  80. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_foldertransfert.py +155 -0
  81. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_ftseries.py +899 -0
  82. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_scanvalidator.py +171 -0
  83. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_tomodir.py +350 -0
  84. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/test/test_viewer.py +138 -0
  85. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/orangecontrib/tomwer/widgets/utils.py +59 -0
  86. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__init__.py +49 -0
  87. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__main__.py +85 -0
  88. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__pycache__/__init__.cpython-37.pyc +0 -0
  89. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__pycache__/__main__.cpython-37.pyc +0 -0
  90. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__pycache__/_version.cpython-37.pyc +0 -0
  91. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__pycache__/setup.cpython-37.pyc +0 -0
  92. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/__pycache__/utils.cpython-37.pyc +0 -0
  93. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/_version.py +123 -0
  94. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__init__.py +0 -0
  95. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/__init__.cpython-37.pyc +0 -0
  96. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/darkref.cpython-37.pyc +0 -0
  97. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/ftserie.cpython-37.pyc +0 -0
  98. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/lbsramtransfert.cpython-37.pyc +0 -0
  99. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/recpyhst.cpython-37.pyc +0 -0
  100. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/samplemoved.cpython-37.pyc +0 -0
  101. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/__pycache__/slicestack.cpython-37.pyc +0 -0
  102. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/darkref.py +68 -0
  103. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/ftserie.py +46 -0
  104. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/lbsramtransfert.py +43 -0
  105. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/recpyhst.py +56 -0
  106. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/samplemoved.py +60 -0
  107. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/app/slicestack.py +56 -0
  108. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/BaseProcess.py +54 -0
  109. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/FolderTransfert.py +296 -0
  110. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ImageLoaderThread.py +136 -0
  111. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/OctaveH5Editor.py +56 -0
  112. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/PyHSTCaller.py +1004 -0
  113. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/RSyncManager.py +425 -0
  114. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ReconsParams.py +138 -0
  115. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ScanList.py +102 -0
  116. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ScanValidator.py +285 -0
  117. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/WaiterThread.py +47 -0
  118. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__init__.py +28 -0
  119. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/BaseProcess.cpython-37.pyc +0 -0
  120. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/FolderTransfert.cpython-37.pyc +0 -0
  121. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/ImageLoaderThread.cpython-37.pyc +0 -0
  122. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/OctaveH5Editor.cpython-37.pyc +0 -0
  123. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/PyHSTCaller.cpython-37.pyc +0 -0
  124. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/RSyncManager.cpython-37.pyc +0 -0
  125. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/ReconsParams.cpython-37.pyc +0 -0
  126. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/ScanList.cpython-37.pyc +0 -0
  127. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/ScanValidator.cpython-37.pyc +0 -0
  128. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/WaiterThread.cpython-37.pyc +0 -0
  129. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/__init__.cpython-37.pyc +0 -0
  130. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/processlog.cpython-37.pyc +0 -0
  131. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/qtApplicationManager.cpython-37.pyc +0 -0
  132. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/__pycache__/settings.cpython-37.pyc +0 -0
  133. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/DarkRefCopy.py +379 -0
  134. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/DarkRefs.py +780 -0
  135. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/__init__.py +0 -0
  136. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/__pycache__/DarkRefCopy.cpython-37.pyc +0 -0
  137. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/__pycache__/DarkRefs.cpython-37.pyc +0 -0
  138. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/darkref/__pycache__/__init__.cpython-37.pyc +0 -0
  139. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ftseries/FastSetupDefineGlobals.py +251 -0
  140. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ftseries/FtserieReconstruction.py +183 -0
  141. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ftseries/Ftseries.py +408 -0
  142. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/core/ftseries/ReconstructionStack.py +254 -0
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  286. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/__init__.py +471 -0
  287. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/__pycache__/__init__.cpython-37.pyc +0 -0
  288. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/gui/icons/history.png +0 -0
  289. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/gui/icons/loop.png +0 -0
  290. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/gui/icons/parameters.png +0 -0
  291. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/resources/gui/icons/tomwer.png +0 -0
  292. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/setup.py +49 -0
  293. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/__init__.py +36 -0
  294. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/__pycache__/__init__.cpython-37.pyc +0 -0
  295. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/__pycache__/parser.cpython-37.pyc +0 -0
  296. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/__pycache__/scheme.cpython-37.pyc +0 -0
  297. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/parser.py +341 -0
  298. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/scheme.py +57 -0
  299. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/test/__init__.py +38 -0
  300. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/test/__pycache__/__init__.cpython-37.pyc +0 -0
  301. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/test/__pycache__/test_core_process_loading.cpython-37.pyc +0 -0
  302. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/simpleworkflow/test/test_core_process_loading.py +256 -0
  303. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/__init__.py +73 -0
  304. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/__pycache__/__init__.cpython-37.pyc +0 -0
  305. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/__pycache__/test_scripts.cpython-37.pyc +0 -0
  306. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/test_scripts.py +115 -0
  307. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/utils/__init__.py +176 -0
  308. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/utils/__pycache__/__init__.cpython-37.pyc +0 -0
  309. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/utils/__pycache__/utilstest.cpython-37.pyc +0 -0
  310. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/test/utils/utilstest.py +417 -0
  311. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/utils.py +56 -0
  312. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/__init__.py +30 -0
  313. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/__pycache__/__init__.cpython-37.pyc +0 -0
  314. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/__pycache__/client.cpython-37.pyc +0 -0
  315. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/__pycache__/config.cpython-37.pyc +0 -0
  316. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/client.py +85 -0
  317. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/config.py +36 -0
  318. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/test/__init__.py +0 -0
  319. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/test/__pycache__/__init__.cpython-37.pyc +0 -0
  320. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/test/__pycache__/test_grayLogConnection.cpython-37.pyc +0 -0
  321. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer/web/test/test_grayLogConnection.py +60 -0
  322. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7-nspkg.pth +1 -0
  323. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/PKG-INFO +176 -0
  324. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/SOURCES.txt +185 -0
  325. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/dependency_links.txt +1 -0
  326. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/entry_points.txt +12 -0
  327. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/namespace_packages.txt +1 -0
  328. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/not-zip-safe +1 -0
  329. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/requires.txt +3 -0
  330. users/payno/.local/share/virtualenvs/tomwer_venc/lib/python3.7/site-packages/tomwer-0.2.0a1-py3.7.egg-info/top_level.txt +2 -0
@@ -0,0 +1,12 @@
1
+ #!/users/payno/.local/share/virtualenvs/tomwer_venc/bin/python
2
+ # EASY-INSTALL-ENTRY-SCRIPT: 'tomwer==0.2.0a1','console_scripts','tomwer'
3
+ __requires__ = 'tomwer==0.2.0a1'
4
+ import re
5
+ import sys
6
+ from pkg_resources import load_entry_point
7
+
8
+ if __name__ == '__main__':
9
+ sys.argv[0] = re.sub(r'(-script\.pyw?|\.exe)?$', '', sys.argv[0])
10
+ sys.exit(
11
+ load_entry_point('tomwer==0.2.0a1', 'console_scripts', 'tomwer')()
12
+ )
@@ -0,0 +1,8 @@
1
+ from tomwer.core import processlog
2
+ from tomwer.core.log import colorlogger
3
+ import logging
4
+
5
+ # orange_logger = logging.getLogger('Orange.canvas')
6
+
7
+ fabio_logger = logging.getLogger('fabio.edfimage')
8
+ fabio_logger.setLevel(logging.WARNING)
@@ -0,0 +1,43 @@
1
+ # coding: utf-8
2
+ # /*##########################################################################
3
+ #
4
+ # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
+ #
6
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
7
+ # of this software and associated documentation files (the "Software"), to deal
8
+ # in the Software without restriction, including without limitation the rights
9
+ # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
+ # copies of the Software, and to permit persons to whom the Software is
11
+ # furnished to do so, subject to the following conditions:
12
+ #
13
+ # The above copyright notice and this permission notice shall be included in
14
+ # all copies or substantial portions of the Software.
15
+ #
16
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
+ # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
+ # THE SOFTWARE.
23
+ #
24
+ # ###########################################################################*/
25
+
26
+ __authors__ = ["H. Payno"]
27
+ __license__ = "MIT"
28
+ __date__ = "05/07/2017"
29
+
30
+
31
+ from numpy.distutils.misc_util import Configuration
32
+
33
+
34
+ def configuration(parent_package='', top_path=None):
35
+ config = Configuration('test', parent_package, top_path)
36
+ config.add_subpackage('widgets')
37
+
38
+ return config
39
+
40
+
41
+ if __name__ == "__main__":
42
+ from numpy.distutils.core import setup
43
+ setup(configuration=configuration)
@@ -0,0 +1,318 @@
1
+ # coding: utf-8
2
+ # /*##########################################################################
3
+ #
4
+ # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
+ #
6
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
7
+ # of this software and associated documentation files (the "Software"), to deal
8
+ # in the Software without restriction, including without limitation the rights
9
+ # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
+ # copies of the Software, and to permit persons to whom the Software is
11
+ # furnished to do so, subject to the following conditions:
12
+ #
13
+ # The above copyright notice and this permission notice shall be included in
14
+ # all copies or substantial portions of the Software.
15
+ #
16
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
+ # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
+ # THE SOFTWARE.
23
+ #
24
+ # ###########################################################################*/
25
+
26
+ __authors__ = ["H. Payno", "Orange"]
27
+ __license__ = "MIT"
28
+ __date__ = "03/03/2017"
29
+
30
+ """
31
+ Unit test from the Orange canvas main instance
32
+
33
+ """
34
+ import os
35
+ import sys
36
+ import gc
37
+ import re
38
+ import logging
39
+ import pickle
40
+ import pkg_resources
41
+ from AnyQt.QtGui import QFont
42
+ from AnyQt.QtCore import Qt, QDir
43
+ import AnyQt.importhooks
44
+
45
+ if AnyQt.USED_API == "pyqt5":
46
+ # Use a backport shim to fake leftover PyQt4 imports
47
+ AnyQt.importhooks.install_backport_hook('pyqt4')
48
+
49
+ from Orange import canvas
50
+ from tomwer.core.qtApplicationManager import QApplicationManager
51
+ from Orange.canvas.application.canvasmain import CanvasMainWindow
52
+ from Orange.canvas.application.outputview import TextStream
53
+ from Orange.canvas.config import cache_dir
54
+ from Orange.canvas import config
55
+ from Orange.canvas.registry.base import WidgetRegistry
56
+ from Orange.canvas.registry import qt
57
+ from Orange.canvas.registry import set_global_registry
58
+ from Orange.canvas.scheme import SchemeNode, SchemeLink
59
+ from Orange.canvas.registry import cache
60
+ from unittest import TestCase
61
+ try:
62
+ import graypy
63
+ except:
64
+ graypy = None
65
+ else:
66
+ from tomwer.web import config as configweb
67
+ log = logging.getLogger(__name__)
68
+
69
+ app = QApplicationManager()
70
+
71
+
72
+ class OrangeWorflowTest(TestCase):
73
+ """Define a specific TestCase reltive to OrangeWorkflow"""
74
+
75
+ def addWidget(self, widgetID):
76
+ """Create an instanciation of the widgetID
77
+
78
+ :return SchemeNode: the node created
79
+ """
80
+ assert(type(widgetID) is str)
81
+ assert(self.widget_registry.has_widget(widgetID))
82
+ widget_desc = self.widget_registry.widget(widgetID)
83
+ myItem = SchemeNode(widget_desc)
84
+ self.canvas_window.current_document().scheme().add_node(myItem)
85
+ return myItem
86
+
87
+ def link(self, schemeNode1, outNode1, schemeNode2, inputNode2):
88
+ """Create a link between the node on the given input and output
89
+
90
+ :param SchemeNode schemeNode1: the node emitting the output signal
91
+ :param outNode1: the output chanel to be linked
92
+ :param SchemeNode schemeNode2: the node receiving the input signal
93
+ :param inputNode2: the input chanel to be linked
94
+ :return: the link created between the two nodes
95
+ """
96
+ assert(type(schemeNode1) is SchemeNode)
97
+ assert(type(schemeNode2) is SchemeNode)
98
+ assert(type(outNode1) is str)
99
+ assert(type(inputNode2) is str)
100
+ link = SchemeLink(schemeNode1, outNode1, schemeNode2, inputNode2)
101
+ self.canvas_window.current_document().scheme().add_link(link)
102
+ return link
103
+
104
+ def getWidgetForNode(self, node):
105
+ """
106
+
107
+ :param SchemeNode node: the node for which we want the corresponding
108
+ widget
109
+ :return: the widget instanciated for the given node
110
+ """
111
+ assert(type(node) is SchemeNode)
112
+ return self.canvas_window.current_document().scheme().widget_for_node(node)
113
+
114
+ @classmethod
115
+ def setUpClass(cls):
116
+ cls.init(cls)
117
+ TestCase.setUpClass()
118
+
119
+ @classmethod
120
+ def tearDownClass(cls):
121
+ cls.canvas_window.deleteLater()
122
+ # make sure no events are resting
123
+ while (app.hasPendingEvents()):
124
+ app.processEvents()
125
+ cls.processOrangeEvents(cls)
126
+ app.flush()
127
+ del cls.canvas_window
128
+
129
+ gc.collect()
130
+ # Collect any cycles before deleting the QApplication instance
131
+ TestCase.tearDownClass()
132
+
133
+ def tearDown(self):
134
+ while(app.hasPendingEvents()):
135
+ app.processEvents()
136
+ TestCase.tearDown(self)
137
+
138
+ @staticmethod
139
+ def fix_osx_10_9_private_font():
140
+ # Fix fonts on Os X (QTBUG 47206, 40833, 32789)
141
+ if sys.platform == "darwin":
142
+ import platform
143
+ try:
144
+ version = platform.mac_ver()[0]
145
+ version = float(version[:version.rfind(".")])
146
+ if version >= 10.11: # El Capitan
147
+ QFont.insertSubstitution(".SF NS Text", "Helvetica Neue")
148
+ elif version >= 10.10: # Yosemite
149
+ QFont.insertSubstitution(".Helvetica Neue DeskInterface",
150
+ "Helvetica Neue")
151
+ elif version >= 10.9:
152
+ QFont.insertSubstitution(".Lucida Grande UI", "Lucida Grande")
153
+ except AttributeError:
154
+ pass
155
+
156
+ @staticmethod
157
+ def fix_win_pythonw_std_stream():
158
+ """
159
+ On windows when running without a console (using pythonw.exe) the
160
+ std[err|out] file descriptors are invalid and start throwing exceptions
161
+ when their buffer is flushed (`http://bugs.python.org/issue706263`_)
162
+
163
+ """
164
+ if sys.platform == "win32" and \
165
+ os.path.basename(sys.executable) == "pythonw.exe":
166
+ if sys.stdout is None:
167
+ sys.stdout = open(os.devnull, "w")
168
+ if sys.stderr is None:
169
+ sys.stderr = open(os.devnull, "w")
170
+
171
+ def processOrangeEvents(self):
172
+ self.canvas_window.current_document().scheme().signal_manager.process_queued()
173
+
174
+ def processOrangeEventsStack(self):
175
+ node_update_front = self.canvas_window.current_document().scheme().signal_manager.node_update_front()
176
+ if node_update_front:
177
+ self.processOrangeEvents()
178
+ self.processOrangeEventsStack()
179
+
180
+ def init(self):
181
+ # Fix streams before configuring logging (otherwise it will store
182
+ # and write to the old file descriptors)
183
+ OrangeWorflowTest.fix_win_pythonw_std_stream()
184
+
185
+ # Try to fix fonts on OSX Mavericks
186
+ OrangeWorflowTest.fix_osx_10_9_private_font()
187
+
188
+ # File handler should always be at least INFO level so we need
189
+ # the application root level to be at least at INFO.
190
+
191
+ rootlogger = logging.getLogger(canvas.__name__)
192
+
193
+ if graypy is not None and configweb.grayport_host is not None:
194
+ self.graylogHandler = graypy.GELFHandler(configweb.grayport_host, configweb.grayport_port)
195
+ rootlogger.addHandler(self.graylogHandler)
196
+
197
+ # Standard output stream handler at the requested level
198
+ stream_hander = logging.StreamHandler()
199
+ rootlogger.addHandler(stream_hander)
200
+
201
+ log.info("Starting 'Orange Canvas' application.")
202
+ log.debug("Starting CanvasApplicaiton ")
203
+ # NOTE: config.init() must be called after the QApplication constructor
204
+ config.init()
205
+
206
+ file_handler = logging.FileHandler(
207
+ filename=os.path.join(config.log_dir(), "canvas.log"),
208
+ mode="w"
209
+ )
210
+
211
+ rootlogger.addHandler(file_handler)
212
+
213
+ # intercept any QFileOpenEvent requests until the main window is
214
+ # fully initialized.
215
+ # NOTE: The QApplication must have the executable ($0) and filename
216
+ # arguments passed in argv otherwise the FileOpen events are
217
+ # triggered for them (this is done by Cocoa, but QApplicaiton filters
218
+ # them out if passed in argv)
219
+
220
+ open_requests = []
221
+ def onrequest(url):
222
+ log.info("Received an file open request %s", url)
223
+ open_requests.append(url)
224
+
225
+ app.fileOpenRequest.connect(onrequest)
226
+
227
+ stylesheet = "orange"
228
+ stylesheet_string = None
229
+
230
+ if stylesheet != "none":
231
+ if os.path.isfile(stylesheet):
232
+ with open(stylesheet, "r") as f:
233
+ stylesheet_string = f.read()
234
+ else:
235
+ if not os.path.splitext(stylesheet)[1]:
236
+ # no extension
237
+ stylesheet = os.path.extsep.join([stylesheet, "qss"])
238
+
239
+ pkg_name = canvas.__name__
240
+ resource = "styles/" + stylesheet
241
+
242
+ if pkg_resources.resource_exists(pkg_name, resource):
243
+ stylesheet_string = \
244
+ pkg_resources.resource_string(pkg_name, resource).decode()
245
+
246
+ base = pkg_resources.resource_filename(pkg_name, "styles")
247
+
248
+ pattern = re.compile(
249
+ r"^\s@([a-zA-Z0-9_]+?)\s*:\s*([a-zA-Z0-9_/]+?);\s*$",
250
+ flags=re.MULTILINE
251
+ )
252
+
253
+ matches = pattern.findall(stylesheet_string)
254
+
255
+ for prefix, search_path in matches:
256
+ QDir.addSearchPath(prefix, os.path.join(base, search_path))
257
+ log.info("Adding search path %r for prefix, %r",
258
+ search_path, prefix)
259
+
260
+ stylesheet_string = pattern.sub("", stylesheet_string)
261
+
262
+ else:
263
+ log.info("%r style sheet not found.", stylesheet)
264
+
265
+ # Add the default canvas_icons search path
266
+ dirpath = os.path.abspath(os.path.dirname(canvas.__file__))
267
+ QDir.addSearchPath("canvas_icons", os.path.join(dirpath, "icons"))
268
+ self.canvas_window = CanvasMainWindow()
269
+ self.canvas_window.setWindowIcon(config.application_icon())
270
+
271
+ if stylesheet_string is not None:
272
+ self.canvas_window.setStyleSheet(stylesheet_string)
273
+
274
+ reg_cache = None
275
+ widget_discovery = qt.QtWidgetDiscovery(cached_descriptions=reg_cache)
276
+
277
+ self.widget_registry = qt.QtWidgetRegistry()
278
+
279
+ widget_discovery.found_category.connect(
280
+ self.widget_registry.register_category
281
+ )
282
+ widget_discovery.found_widget.connect(
283
+ self.widget_registry.register_widget
284
+ )
285
+
286
+ cache_filename = os.path.join(cache_dir(), "widget-registry.pck")
287
+ widget_discovery.run(config.widgets_entry_points())
288
+ # Store cached descriptions
289
+ cache.save_registry_cache(widget_discovery.cached_descriptions)
290
+ with open(cache_filename, "wb") as f:
291
+ pickle.dump(WidgetRegistry(self.widget_registry), f)
292
+
293
+ set_global_registry(self.widget_registry)
294
+ self.canvas_window.set_widget_registry(self.widget_registry)
295
+ self.canvas_window.show()
296
+
297
+ # Process events to make sure the self.canvas_window layout has
298
+ # a chance to activate (the welcome dialog is modal and will
299
+ # block the event queue, plus we need a chance to receive open file
300
+ # signals when running without a splash screen)
301
+ app.processEvents()
302
+ log.info("discovery ended")
303
+ # Tee stdout and stderr into Output dock
304
+ log_view = self.canvas_window.log_view()
305
+
306
+ stdout = TextStream()
307
+ stdout.stream.connect(log_view.write)
308
+ if sys.stdout:
309
+ stdout.stream.connect(sys.stdout.write)
310
+ stdout.flushed.connect(sys.stdout.flush)
311
+ stderr = TextStream()
312
+ error_writer = log_view.formated(color=Qt.red)
313
+ stderr.stream.connect(error_writer.write)
314
+ if sys.stderr:
315
+ stderr.stream.connect(sys.stderr.write)
316
+ stderr.flushed.connect(sys.stderr.flush)
317
+
318
+ log.info("End initialization")
@@ -0,0 +1,253 @@
1
+ # coding: utf-8
2
+ # /*##########################################################################
3
+ #
4
+ # Copyright (c) 2015-2016 European Synchrotron Radiation Facility
5
+ #
6
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
7
+ # of this software and associated documentation files (the "Software"), to deal
8
+ # in the Software without restriction, including without limitation the rights
9
+ # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
+ # copies of the Software, and to permit persons to whom the Software is
11
+ # furnished to do so, subject to the following conditions:
12
+ #
13
+ # The above copyright notice and this permission notice shall be included in
14
+ # all copies or substantial portions of the Software.
15
+ #
16
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
+ # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
+ # THE SOFTWARE.
23
+ #
24
+ # ###########################################################################*/
25
+ """Full tomwer test suite.
26
+
27
+ """
28
+
29
+ __authors__ = ["H.Payno"]
30
+ __license__ = "MIT"
31
+ __date__ = "19/01/2017"
32
+
33
+ import logging
34
+ import os
35
+ import shutil
36
+
37
+ from tomwer.core.utils import ftseriesutils
38
+ from silx.gui import qt
39
+
40
+ from tomwer.test.utils import UtilsTest
41
+
42
+ logger = logging.getLogger(__name__)
43
+
44
+
45
+ class Simulation(qt.QThread):
46
+ """Simulation is a simple class able to simulate an acquisition by copying
47
+ files on a targetted directory.
48
+
49
+ :param str: targetdir the folder where the acquisition is stored
50
+ :param str: manipulationId the id of the simulation we want to simulate
51
+ :param str: finalState when launched, the state to reach before stopping
52
+
53
+ :warning: the targetted directory won't be removed or cleaned during class
54
+ destruction. This is to be managed by callers.
55
+ """
56
+
57
+ advancement = {
58
+ 'not started': -1,
59
+ 'starting-s0': 0,
60
+ 'starting-s1': 1,
61
+ 'acquisitionRunning': 2,
62
+ 'acquisitionDone': 3,
63
+ 'reconstructionLaunched': 4}
64
+ sigAdvancementChanged = qt.Signal(int)
65
+
66
+ __definedDataset = ['test01', 'test10']
67
+
68
+ def __init__(self, targetdir, manipulationId, finalState=4):
69
+ assert(type(manipulationId) is str)
70
+ assert(type(targetdir) is str)
71
+ assert(manipulationId in self.__definedDataset)
72
+ super(Simulation, self).__init__()
73
+
74
+ self.targetdir = targetdir
75
+ self.outputFolder = targetdir + '/' + manipulationId
76
+ self.finalState = finalState
77
+ self.currentState = 'not started'
78
+ self._createFinalXML = False
79
+ self.originalFolder, self.nbSlices, self.manipulationId = \
80
+ self.__getOriginalDataSet(manipulationId)
81
+ self.stopFileCreationForRunningState = int(self.nbSlices/2)
82
+ self.srcPattern = None
83
+ self.destPattern = None
84
+
85
+ def __getOriginalDataSet(self, dataSetID):
86
+ """Return paths to the requested dataset
87
+ """
88
+ assert(dataSetID in self.__definedDataset)
89
+ dataDir = UtilsTest.getDataset(dataSetID)
90
+
91
+ assert(os.path.isdir(dataDir))
92
+ assert(os.path.isfile(os.path.join(dataDir, dataSetID + ".info")))
93
+ slices = ftseriesutils.getRadioPaths(dataDir)
94
+ nbSlices = len(slices)
95
+ manipulationID = dataSetID
96
+
97
+ return dataDir, nbSlices, manipulationID
98
+
99
+ def advanceTo(self, state):
100
+ """Reset the new advancement targetted
101
+
102
+ :param str state: the new state to reach when run will be executed
103
+ """
104
+ assert(state in Simulation.advancement)
105
+ assert(type(state) is str)
106
+ self.finalState = Simulation.advancement[state]
107
+
108
+ def setSrcDestPatterns(self, srcPattern, destPattern):
109
+ """
110
+ If setted, will set the .info and .xml files into a different folder
111
+ """
112
+ self.srcPattern = srcPattern
113
+ self.destPattern = destPattern
114
+ if srcPattern is not None or destPattern is not None:
115
+ assert(os.path.isdir(srcPattern))
116
+ assert(os.path.isdir(destPattern))
117
+ targettedFolder = self.outputFolder.replace(self.srcPattern, self.destPattern, 1)
118
+ if not os.path.isdir(targettedFolder):
119
+ os.mkdir(targettedFolder)
120
+
121
+ def __shouldExecStep(self, step):
122
+ """Return True if the thread should exec this step to advance taking
123
+ into consideration is current state and his final state
124
+ """
125
+ return self.finalState >= self.advancement[step] and \
126
+ (Simulation.advancement[self.currentState] +1 == self.advancement[step])
127
+
128
+ def run(self):
129
+ """Main function, run the acquisition through all states until
130
+ finalState is reached
131
+ """
132
+ if self.__shouldExecStep('starting-s0') is True:
133
+ logger.info('starting-s0')
134
+ self._startAcquisition()
135
+ self.currentState = 'starting-s0'
136
+ self.signalCurrentState()
137
+
138
+ if self.__shouldExecStep('starting-s1') is True:
139
+ self.copyInitialFiles()
140
+ logger.info('starting-s1')
141
+ self.currentState = 'starting-s1'
142
+ self.signalCurrentState()
143
+
144
+ if self.__shouldExecStep('acquisitionRunning') is True:
145
+ self._copyScans((0,
146
+ self.stopFileCreationForRunningState))
147
+ logger.info('acquisitionRunning')
148
+ self.currentState = 'acquisitionRunning'
149
+ self.signalCurrentState()
150
+
151
+ if self.__shouldExecStep('acquisitionDone') is True:
152
+ self._copyScans((self.stopFileCreationForRunningState,
153
+ self.nbSlices))
154
+ if self._createFinalXML is True:
155
+ inputXMLFile = os.path.join(self.originalFolder, self.manipulationId + '.xml')
156
+ assert(os.path.isfile(inputXMLFile))
157
+ ouputXMLFile = os.path.join(self.outputFolder, self.manipulationId + '.xml')
158
+ shutil.copyfile(inputXMLFile, ouputXMLFile)
159
+
160
+ logger.info('acquisitionDone')
161
+ self.currentState = 'acquisitionDone'
162
+ self.signalCurrentState()
163
+
164
+ def signalCurrentState(self):
165
+ """Signal the actual state of the simulation
166
+ """
167
+ self.sigAdvancementChanged.emit(self.currentState)
168
+
169
+ def _startAcquisition(self):
170
+ """create needed data dir
171
+ """
172
+ for newFolder in (self.targetdir, self.outputFolder):
173
+ if not os.path.exists(self.outputFolder):
174
+ os.makedirs(self.outputFolder)
175
+
176
+ def _copyScans(self, _slicesRange):
177
+ """copy the .edf file from the original directory to the outputFolder
178
+
179
+ :_slicesRange tuple: the _range of slices data we want to copy
180
+ """
181
+ logger.info('copying files from %s to %s' % (_slicesRange[0], _slicesRange[1]))
182
+ for iSlice in list(range(_slicesRange[0], _slicesRange[1])):
183
+ filename = "".join((self.manipulationId, format(iSlice, '04d'), '.edf'))
184
+ srcFile = os.path.join(self.originalFolder, filename)
185
+ outputFile = os.path.join(self.outputFolder, filename)
186
+ assert(os.path.isfile(srcFile))
187
+ assert(os.path.isdir(self.outputFolder))
188
+ shutil.copyfile(srcFile, outputFile)
189
+
190
+ def copyInitialFiles(self):
191
+ """copy the .info file
192
+ """
193
+ assert(os.path.isdir(self.originalFolder))
194
+ logger.info('copying initial files (.info, .xml...) from %s to %s' % (self.originalFolder, self.manipulationId))
195
+ for extension in ('.info', '.db', '.cfg'):
196
+ filename = "".join((self.manipulationId, extension))
197
+ srcFile = os.path.join(self.originalFolder, filename)
198
+
199
+ targettedFolder = self.outputFolder
200
+ if self.srcPattern is not None or self.destPattern is not None:
201
+ targettedFolder = self.outputFolder.replace(self.srcPattern, self.destPattern, 1)
202
+ assert(os.path.isfile(srcFile))
203
+ assert(os.path.isdir(targettedFolder))
204
+ assert (os.path.isdir(self.originalFolder))
205
+ shutil.copy2(srcFile, targettedFolder)
206
+
207
+ def createFinalXML(self, val):
208
+ """If activated, once all the file will be copied, this will create
209
+ an .xml file into the output directory
210
+ """
211
+ self._createFinalXML = val
212
+
213
+ def createParFile(self):
214
+ pass
215
+
216
+ def createReconstructedFile(self):
217
+ pass
218
+
219
+ def createOARJob(self):
220
+ pass
221
+
222
+ def createDark(self):
223
+ pass
224
+
225
+ def createJPG(self):
226
+ pass
227
+
228
+ def createVolfloat(self):
229
+ pass
230
+
231
+ def createVolraw(self):
232
+ pass
233
+
234
+ def __createFileTo(self, filePath):
235
+ assert(type(filePath) is str)
236
+ open(filePath, 'a').close()
237
+
238
+
239
+ def main():
240
+ import time
241
+ _qapp = qt.QApplication.instance() or qt.QApplication([])
242
+
243
+ inputdir = '/tmp'
244
+ manipulationId = 'test10'
245
+ s = Simulation(inputdir, manipulationId, finalState=Simulation.advancement['acquisitionRunning'])
246
+ s.start()
247
+ while(not s.isFinished()):
248
+ _qapp.processEvents()
249
+ time.sleep(1)
250
+
251
+
252
+ if __name__ == '__main__':
253
+ main()
@@ -0,0 +1,49 @@
1
+ # coding: utf-8
2
+ #/*##########################################################################
3
+ # Copyright (C) 2016 European Synchrotron Radiation Facility
4
+ #
5
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ # of this software and associated documentation files (the "Software"), to deal
7
+ # in the Software without restriction, including without limitation the rights
8
+ # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ # copies of the Software, and to permit persons to whom the Software is
10
+ # furnished to do so, subject to the following conditions:
11
+ #
12
+ # The above copyright notice and this permission notice shall be included in
13
+ # all copies or substantial portions of the Software.
14
+ #
15
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
21
+ # THE SOFTWARE.
22
+ #
23
+ #############################################################################*/
24
+
25
+
26
+ __authors__ = ["H.Payno"]
27
+ __license__ = "MIT"
28
+ __date__ = "15/05/2017"
29
+
30
+ import unittest
31
+ from . import test_scanlist_samplemoved
32
+ from . import test_scanlist_ftserie
33
+ from . import test_workflows
34
+ from . import test_dark_flat_field
35
+ from ..widgets import test as test_widgets
36
+
37
+
38
+ def suite(loader=None, pattern='test*.py'):
39
+ test_suite = unittest.TestSuite()
40
+ test_suite.addTest(test_widgets.suite())
41
+ test_suite.addTest(test_scanlist_ftserie.suite())
42
+ test_suite.addTests(test_workflows.suite())
43
+ test_suite.addTest(test_dark_flat_field.suite())
44
+ test_suite.addTest(test_scanlist_samplemoved.suite())
45
+ return test_suite
46
+
47
+
48
+ if __name__ == '__main__':
49
+ unittest.main(defaultTest='suite')