tol-sdk 1.8.1__tar.gz → 1.8.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (356) hide show
  1. {tol_sdk-1.8.1/src/tol_sdk.egg-info → tol_sdk-1.8.2}/PKG-INFO +1 -1
  2. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/pyproject.toml +1 -1
  3. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/sql/pipeline_step/factory.py +14 -4
  4. {tol_sdk-1.8.1 → tol_sdk-1.8.2/src/tol_sdk.egg-info}/PKG-INFO +1 -1
  5. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/LICENSE +0 -0
  6. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/MANIFEST.in +0 -0
  7. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/README.md +0 -0
  8. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/setup.cfg +0 -0
  9. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/certs/cacert.pem +0 -0
  10. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/__init__.py +0 -0
  11. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/actions/__init__.py +0 -0
  12. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/actions/action.py +0 -0
  13. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/actions/upsert_action.py +0 -0
  14. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/__init__.py +0 -0
  15. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/action.py +0 -0
  16. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/__init__.py +0 -0
  17. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/abc/__init__.py +0 -0
  18. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/abc/auth.py +0 -0
  19. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/abc/authorisation.py +0 -0
  20. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/asserts.py +0 -0
  21. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/blueprint.py +0 -0
  22. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/composite.py +0 -0
  23. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/config.py +0 -0
  24. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/auth/error.py +0 -0
  25. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/blueprint.py +0 -0
  26. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/controller.py +0 -0
  27. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/data_upload.py +0 -0
  28. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/__init__.py +0 -0
  29. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/aggregation_body.py +0 -0
  30. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/aggregation_parameters.py +0 -0
  31. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/auth_context.py +0 -0
  32. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/authenticate.py +0 -0
  33. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/data_body.py +0 -0
  34. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/filter_utils.py +0 -0
  35. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/list_get_parameters.py +0 -0
  36. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/relation_url.py +0 -0
  37. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/misc/stats_parameters.py +0 -0
  38. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/pipeline_steps.py +0 -0
  39. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_base/system.py +0 -0
  40. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/__init__.py +0 -0
  41. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/api_datasource.py +0 -0
  42. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/client.py +0 -0
  43. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/converter.py +0 -0
  44. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/exception.py +0 -0
  45. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/factory.py +0 -0
  46. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/filter.py +0 -0
  47. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/parser.py +0 -0
  48. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/validate.py +0 -0
  49. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/api_client/view.py +0 -0
  50. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/barcodes/__init__.py +0 -0
  51. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/barcodes/main.py +0 -0
  52. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/__init__.py +0 -0
  53. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/benchling_converter.py +0 -0
  54. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/benchling_datasource.py +0 -0
  55. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/benchling_warehouse_datasource.py +0 -0
  56. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/__init__.py +0 -0
  57. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/extraction_containers_dna.sql +0 -0
  58. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/extraction_extraction_type_dna.sql +0 -0
  59. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/extraction_extraction_type_lres.sql +0 -0
  60. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/extraction_extraction_type_pooled_dna.sql +0 -0
  61. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/extraction_extraction_type_rna.sql +0 -0
  62. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/pacbio_prep.sql +0 -0
  63. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/pooled_pacbio_prep.sql +0 -0
  64. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/results_extraction_dna.sql +0 -0
  65. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/results_extraction_pooled.sql +0 -0
  66. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/results_extraction_rna.sql +0 -0
  67. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/results_pacbio_prep.sql +0 -0
  68. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/results_pacbio_prep_pooled.sql +0 -0
  69. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/sample.sql +0 -0
  70. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/sequencing_request_sequencing_platform_hic.sql +0 -0
  71. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/sequencing_request_sequencing_platform_pacbio.sql +0 -0
  72. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/sequencing_request_sequencing_platform_rnaseq.sql +0 -0
  73. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/sequencing_request_sequencing_platform_wgs.sql +0 -0
  74. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/benchling/sql/tissue_prep.sql +0 -0
  75. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/board/__init__.py +0 -0
  76. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/board/blueprint.py +0 -0
  77. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/__init__.py +0 -0
  78. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/bold_datasource.py +0 -0
  79. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/client.py +0 -0
  80. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/converter.py +0 -0
  81. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/factory.py +0 -0
  82. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/parser.py +0 -0
  83. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/cli/__init__.py +0 -0
  84. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/cli/cli.py +0 -0
  85. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/converter/__init__.py +0 -0
  86. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/converter/yaml/__init__.py +0 -0
  87. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/converter/yaml/model.py +0 -0
  88. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/converter/yaml/yaml_converter.py +0 -0
  89. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/__init__.py +0 -0
  90. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/client.py +0 -0
  91. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/converter.py +0 -0
  92. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/copo_datasource.py +0 -0
  93. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/factory.py +0 -0
  94. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/parser.py +0 -0
  95. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/__init__.py +0 -0
  96. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/attribute_metadata.py +0 -0
  97. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/core_converter.py +0 -0
  98. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/data_loader.py +0 -0
  99. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/data_object.py +0 -0
  100. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/data_object_converter.py +0 -0
  101. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/data_source_attribute_metadata.py +0 -0
  102. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/data_source_dict.py +0 -0
  103. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/datasource.py +0 -0
  104. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/datasource_error.py +0 -0
  105. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/datasource_filter.py +0 -0
  106. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/datasource_utils.py +0 -0
  107. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/factory.py +0 -0
  108. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/http_client.py +0 -0
  109. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/__init__.py +0 -0
  110. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/_filterable.py +0 -0
  111. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/_writer.py +0 -0
  112. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/aggregator.py +0 -0
  113. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/counter.py +0 -0
  114. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/cursor.py +0 -0
  115. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/declare.py +0 -0
  116. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/deleter.py +0 -0
  117. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/detail_getter.py +0 -0
  118. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/enricher.py +0 -0
  119. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/enum.py +0 -0
  120. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/group_statter.py +0 -0
  121. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/inserter.py +0 -0
  122. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/list_getter.py +0 -0
  123. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/operator_config.py +0 -0
  124. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/page_getter.py +0 -0
  125. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/relational.py +0 -0
  126. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/statter.py +0 -0
  127. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/summariser.py +0 -0
  128. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/updater.py +0 -0
  129. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/operator/upserter.py +0 -0
  130. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/relationship.py +0 -0
  131. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/requested_fields.py +0 -0
  132. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/session.py +0 -0
  133. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/validate.py +0 -0
  134. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/elastic/__init__.py +0 -0
  135. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/elastic/elastic_datasource.py +0 -0
  136. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/elastic/runtime_fields.py +0 -0
  137. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/__init__.py +0 -0
  138. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/auth.py +0 -0
  139. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/eln_datasource.py +0 -0
  140. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/entities.py +0 -0
  141. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/generators.py +0 -0
  142. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/sanitise.py +0 -0
  143. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/__init__.py +0 -0
  144. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/client.py +0 -0
  145. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/converter.py +0 -0
  146. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/ena_datasource.py +0 -0
  147. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/ena_methods.py +0 -0
  148. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/factory.py +0 -0
  149. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/filter.py +0 -0
  150. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/parser.py +0 -0
  151. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/excel/__init__.py +0 -0
  152. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/excel/excel.py +0 -0
  153. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/excel/excel_datasource.py +0 -0
  154. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/excel/s3_factory.py +0 -0
  155. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/__init__.py +0 -0
  156. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/__init__.py +0 -0
  157. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_entity_to_benchling_worklist_item_converter_factory.py +0 -0
  158. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_extraction_to_elastic_extraction_converter.py +0 -0
  159. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_extraction_to_elastic_sequencing_request_converter.py +0 -0
  160. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_sample_casm_to_sts_sample_converter.py +0 -0
  161. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_sample_to_elastic_sample_converter.py +0 -0
  162. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_sequencing_request_to_elastic_sequencing_request_converter.py +0 -0
  163. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_tissue_prep_to_elastic_tissue_prep_converter.py +0 -0
  164. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/benchling_tissue_to_sts_sample_converter.py +0 -0
  165. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bioscan_extra_pantheon_species_to_elastic_sample_update_converter.py +0 -0
  166. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bioscan_image_to_elastic_sample_update_converter.py +0 -0
  167. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bioscan_qc_specimen_to_elastic_sample_update_converter.py +0 -0
  168. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bioscan_qc_uksi_entry_to_elastic_sample_update_converter.py +0 -0
  169. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bold_bin_to_elastic_sample_update_converter.py +0 -0
  170. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/bold_sample_to_elastic_sample_update_converter.py +0 -0
  171. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/elastic_object_to_portaldb_object_converter.py +0 -0
  172. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/elastic_sample_to_benchling_tissue_converter.py +0 -0
  173. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/elastic_sample_to_benchling_tissue_update_converter.py +0 -0
  174. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/elastic_sample_to_bold_sample_converter.py +0 -0
  175. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/flows/converters/elastic_sample_to_elastic_sequencing_request_update_converter.py +0 -0
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  356. {tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol_sdk.egg-info/top_level.txt +0 -0
{tol_sdk-1.8.1/src/tol_sdk.egg-info → tol_sdk-1.8.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: tol-sdk
3
- Version: 1.8.1
3
+ Version: 1.8.2
4
4
  Summary: SDK for interaction with ToL, Sanger and external services
5
5
  Author-email: ToL Platforms Team <tol-platforms@sanger.ac.uk>
6
6
  License: MIT
{tol_sdk-1.8.1 → tol_sdk-1.8.2}/pyproject.toml RENAMED
@@ -8,7 +8,7 @@ build-backend = "setuptools.build_meta"
8
8
 
9
9
  [project]
10
10
  name = "tol-sdk"
11
- version = "1.8.1"
11
+ version = "1.8.2"
12
12
  description = "SDK for interaction with ToL, Sanger and external services"
13
13
  readme = "README.md"
14
14
  authors = [
{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/sql/pipeline_step/factory.py RENAMED
@@ -64,7 +64,7 @@ def create_pipeline_step_models(
64
64
  class Pipeline(base_model_class):
65
65
  __tablename__ = 'pipeline'
66
66
 
67
- id: Mapped[int] = mapped_column( # noqa A003
67
+ id: Mapped[int] = mapped_column( # noqa A003
68
68
  primary_key=True,
69
69
  autoincrement=True
70
70
  )
@@ -100,7 +100,7 @@ def create_pipeline_step_models(
100
100
  ),
101
101
  )
102
102
 
103
- id: Mapped[int] = mapped_column( # noqa A003
103
+ id: Mapped[int] = mapped_column( # noqa A003
104
104
  primary_key=True,
105
105
  autoincrement=True
106
106
  )
@@ -121,6 +121,11 @@ def create_pipeline_step_models(
121
121
  nullable=False
122
122
  )
123
123
 
124
+ is_visible: Mapped[bool] = mapped_column(
125
+ nullable=False,
126
+ default=True
127
+ )
128
+
124
129
  config: Mapped[dict[str, Any]] = mapped_column(
125
130
  JSONB,
126
131
  nullable=False,
@@ -135,7 +140,7 @@ def create_pipeline_step_models(
135
140
  class Upload(base_model_class):
136
141
  __tablename__ = 'upload'
137
142
 
138
- id: Mapped[int] = mapped_column( # noqa A003
143
+ id: Mapped[int] = mapped_column( # noqa A003
139
144
  primary_key=True,
140
145
  autoincrement=True
141
146
  )
@@ -173,6 +178,11 @@ def create_pipeline_step_models(
173
178
  default=False
174
179
  )
175
180
 
181
+ is_ready: Mapped[bool] = mapped_column(
182
+ nullable=False,
183
+ default=False
184
+ )
185
+
176
186
  failure_message: Mapped[str | None] = mapped_column(
177
187
  nullable=True,
178
188
  )
@@ -182,7 +192,7 @@ def create_pipeline_step_models(
182
192
  foreign_keys=[pipeline_id]
183
193
  )
184
194
 
185
- user: Mapped['User'] = relationship( # noqa F821
195
+ user: Mapped['User'] = relationship( # noqa F821
186
196
  back_populates='user_uploads',
187
197
  foreign_keys=[user_id]
188
198
  )
{tol_sdk-1.8.1 → tol_sdk-1.8.2/src/tol_sdk.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: tol-sdk
3
- Version: 1.8.1
3
+ Version: 1.8.2
4
4
  Summary: SDK for interaction with ToL, Sanger and external services
5
5
  Author-email: ToL Platforms Team <tol-platforms@sanger.ac.uk>
6
6
  License: MIT
{tol_sdk-1.8.1 → tol_sdk-1.8.2}/LICENSE RENAMED
File without changes
{tol_sdk-1.8.1 → tol_sdk-1.8.2}/MANIFEST.in RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/README.md RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/setup.cfg RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/certs/cacert.pem RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/__init__.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/client.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/factory.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/bold/parser.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/cli/__init__.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/cli/cli.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/client.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/factory.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/copo/parser.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/factory.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/core/session.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/__init__.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/auth.py RENAMED
File without changes
{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/entities.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/eln/sanitise.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/__init__.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/client.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/factory.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/filter.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/ena/parser.py RENAMED
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{tol_sdk-1.8.1 → tol_sdk-1.8.2}/src/tol/excel/excel.py RENAMED
File without changes