PyPI - tol-sdk - Versions diffs - 1.7.5b3__tar.gz → 1.7.5b4__tar.gz - Mend

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: tol-sdk
-Version: 1.7.5b3
+Version: 1.7.5b4
 Summary: SDK for interaction with ToL, Sanger and external services
 Author-email: ToL Platforms Team <tol-platforms@sanger.ac.uk>
 License: MIT

@@ -8,7 +8,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "tol-sdk"
-version = "1.7.5-beta3"
+version = "1.7.5-beta4"
 description = "SDK for interaction with ToL, Sanger and external services"
 readme = "README.md"
 authors = [

@@ -97,7 +97,8 @@ class SanitisingConverter(DataObjectToDataObjectOrUpdateConverter):
     def __init__(
         self,
-        data_object_factory: DataObjectFactory
+        data_object_factory: DataObjectFactory,
+        **kwargs
     ):
         super().__init__(data_object_factory)

@@ -55,3 +55,4 @@ from .tolqc_species_to_elastic_species_converter import TolqcSpeciesToElasticSpe
 from .sts_sample_to_casm_benchling_converter import StsSampleToCasmBenchlingConverterFactory # noqa F401
 from .treeofsex_species_to_treeofsexwh_species_converter import TreeofsexSpeciesToTreeofsexwhSpeciesConverter  # noqa F401
 from .treeofsex_upload_to_treeofsex_attribute_converter import TreeofsexUploadToTreeofsexAttributeConverter  # noqa F401
+from .skip_null_fields_converter import SkipNullFieldsConverter  # noqa F401

@@ -0,0 +1,42 @@
+# SPDX-FileCopyrightText: 2025 Genome Research Ltd.
+# SPDX-License-Identifier: MIT
+from dataclasses import dataclass
+from typing import Iterable
+from tol.core import DataObject, DataObjectToDataObjectOrUpdateConverter
+class SkipNullFieldsConverter(DataObjectToDataObjectOrUpdateConverter):
+    @dataclass(slots=True, frozen=True, kw_only=True)
+    class Config:
+        field_names: list[str]
+    __slots__ = ['__config']
+    __config: Config
+    def __init__(self, data_object_factory, config: Config) -> None:
+        super().__init__(data_object_factory)
+        self.__config = config
+        self._data_object_factory = data_object_factory
+    def convert(self, data_object: DataObject) -> Iterable[DataObject]:
+        """
+        removing null fields from the DataObject
+        """
+        passes = True
+        for field in self.__config.field_names:
+            value = data_object.get_field_by_name(field)
+            if value is None:
+                passes = False
+                break
+        if passes:
+            ret = self._data_object_factory(
+                data_object.type,
+                data_object.id,
+                attributes=data_object.attributes
+            )
+            yield ret

@@ -193,6 +193,7 @@ src/tol/flows/converters/labwhere_location_to_sts_tray_converter.py
 src/tol/flows/converters/mlwh_extraction_to_elastic_extraction_converter.py
 src/tol/flows/converters/mlwh_run_data_to_elastic_run_data_converter.py
 src/tol/flows/converters/mlwh_sequencing_request_to_elastic_sequencing_request_converter.py
+src/tol/flows/converters/skip_null_fields_converter.py
 src/tol/flows/converters/sts_banked_sample_to_elastic_sample_converter.py
 src/tol/flows/converters/sts_manifest_to_elastic_manifest_converter.py
 src/tol/flows/converters/sts_project_to_elastic_sample_update_converter.py

tol-sdk 1.7.5b3__tar.gz → 1.7.5b4__tar.gz