ticoi 0.0.1__tar.gz → 0.1.0__tar.gz

{ticoi-0.0.1 → ticoi-0.1.0}/.github/workflows/pypi-publish.yml

@@ -1,6 +1,6 @@
 # This workflow will upload a Python Package using hatch when a release is created
 # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
-
+#Inspired from https://blog.pecar.me/automate-hatch-publish and https://github.com/shippp/hipp/blob/main/.github/workflows/pypi-publish.yml
 # This workflow uses actions that are not certified by GitHub.
 # They are provided by a third-party and are governed by
 # separate terms of service, privacy policy, and support
@@ -27,9 +27,10 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: "3.10"
+        cache: 'pip'
 
     - name: Install Hatch
-      run: pipx install hatch
+      run: pip install hatch
 
     # - name: Run tests
     #   uses: hatch run dev:pytest

ticoi-0.0.1/.github/workflows/test_hatch.yml → ticoi-0.1.0/.github/workflows/python-app.yml

@@ -1,12 +1,12 @@
-name: test
+name: Python test
 
 on:
   push:
     branches:
-    - master
+    - main
   pull_request:
     branches:
-    - master
+    - main
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }}
@@ -40,10 +40,9 @@ jobs:
     - name: Install ourself
       run: |
         uv pip install --system -e .
-        uv pip install --system -e ./backend
 
-    - name: Run static analysis
-      run: hatch fmt --check
+    - name: Install hatch
+      run: uv pip install --system hatch
 
     - name: Run tests
       run: hatch test --python ${{ matrix.python-version }} --cover-quiet --randomize --parallel --retries 5 --retry-delay 3

{ticoi-0.0.1 → ticoi-0.1.0}/PKG-INFO

@@ -1,9 +1,9 @@
 Metadata-Version: 2.4
 Name: ticoi
-Version: 0.0.1
+Version: 0.1.0
 Summary: A package to run Temporal Inversion using linear Combinations of Observations, and Interpolation (TICOI)
 Project-URL: Homepage, https://github.com/ticoi/ticoi.git
-Project-URL: Issues, https://github.com/pypa/sampleproject/issues
+Project-URL: Issues, https://github.com/ticoi/ticoi/issues
 Author: Lei Guo
 Author-email: Laurane Charrier <laurane.charrier@outlook.com>
 License: GPL-3.0-only
@@ -81,18 +81,14 @@ Clone the git repo and create a `mamba` environment (see how to install `mamba`
 the [mamba documentation](https://mamba.readthedocs.io/en/latest/)):
 
 ```bash
-git clone git@github.com:ticoi/ticoi.git
-cd ticoi
 mamba env create -f environment.yml  # Add '-n custom_name' if you want.
-mamba activate environment  # Or any other name specified above
+mamba install -c conda-forge ticoi
 ```
 
 ### With `pip`
 
 ```bash
-python3.10 -m venv ticoi-env
-source ticoi-env/bin/activate
-pip install git+https://github.com/ticoi/ticoi.git
+pip install ticoi
 ```
 
 ## TUTORIALS
@@ -114,6 +110,7 @@ pip install git+https://github.com/ticoi/ticoi.git
 * [How to process one ITS_LIVE cube directly from the cloud](/examples/advanced/cube_ticoi_demo_its_live.py)
 * [How to format several geotiff files into a netCDF file](examples/advanced/cube_prep_from_geotiff.py)
 * [How to apply GLAFT on TICOI results](examples/advanced/glaft_for_ticoi_results.py)
+* [How to compute statistics in static areas](examples/advanced/stats_in_static_areas.py)
 
 ## TO USE YOUR OWN DATASET
 

{ticoi-0.0.1 → ticoi-0.1.0}/README.md

@@ -43,18 +43,14 @@ Clone the git repo and create a `mamba` environment (see how to install `mamba`
 the [mamba documentation](https://mamba.readthedocs.io/en/latest/)):
 
 ```bash
-git clone git@github.com:ticoi/ticoi.git
-cd ticoi
 mamba env create -f environment.yml  # Add '-n custom_name' if you want.
-mamba activate environment  # Or any other name specified above
+mamba install -c conda-forge ticoi
 ```
 
 ### With `pip`
 
 ```bash
-python3.10 -m venv ticoi-env
-source ticoi-env/bin/activate
-pip install git+https://github.com/ticoi/ticoi.git
+pip install ticoi
 ```
 
 ## TUTORIALS
@@ -76,6 +72,7 @@ pip install git+https://github.com/ticoi/ticoi.git
 * [How to process one ITS_LIVE cube directly from the cloud](/examples/advanced/cube_ticoi_demo_its_live.py)
 * [How to format several geotiff files into a netCDF file](examples/advanced/cube_prep_from_geotiff.py)
 * [How to apply GLAFT on TICOI results](examples/advanced/glaft_for_ticoi_results.py)
+* [How to compute statistics in static areas](examples/advanced/stats_in_static_areas.py)
 
 ## TO USE YOUR OWN DATASET
 

ticoi-0.1.0/examples/advanced/stats_in_static_areas.py

@@ -0,0 +1,13 @@
+from ticoi.cube_data_classxr import CubeDataClass
+from ticoi.example import get_path
+
+
+cube_name = get_path("Argentiere_example_interp")  # path to our dataset
+stable_area = get_path("Argentiere_static")
+
+cube = CubeDataClass()
+cube.load(cube_name, pick_date=["2017-01-01", "2017-03-30"])
+# Compute normalized median absolute deviation
+nmad = cube.compute_nmad(shapefile_path=stable_area, return_as="dataframe")
+# Compte median over stable areas
+med = cube.compute_med_static_areas(shapefile_path=stable_area, return_as="dataframe")