thyra 2.1.0__tar.gz → 2.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (97) hide show
  1. {thyra-2.1.0 → thyra-2.2.0}/PKG-INFO +1 -1
  2. {thyra-2.1.0 → thyra-2.2.0}/pyproject.toml +1 -1
  3. {thyra-2.1.0 → thyra-2.2.0}/thyra/__init__.py +1 -1
  4. {thyra-2.1.0 → thyra-2.2.0}/LICENSE +0 -0
  5. {thyra-2.1.0 → thyra-2.2.0}/README.md +0 -0
  6. {thyra-2.1.0 → thyra-2.2.0}/thyra/__main__.py +0 -0
  7. {thyra-2.1.0 → thyra-2.2.0}/thyra/alignment/__init__.py +0 -0
  8. {thyra-2.1.0 → thyra-2.2.0}/thyra/alignment/affine.py +0 -0
  9. {thyra-2.1.0 → thyra-2.2.0}/thyra/alignment/teaching_points.py +0 -0
  10. {thyra-2.1.0 → thyra-2.2.0}/thyra/config.py +0 -0
  11. {thyra-2.1.0 → thyra-2.2.0}/thyra/convert.py +0 -0
  12. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/__init__.py +0 -0
  13. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/__init__.py +0 -0
  14. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/_chunking.py +0 -0
  15. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/base_spatialdata_converter.py +0 -0
  16. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/converter.py +0 -0
  17. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/spatialdata_2d_converter.py +0 -0
  18. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/spatialdata_3d_converter.py +0 -0
  19. {thyra-2.1.0 → thyra-2.2.0}/thyra/converters/spatialdata/streaming_converter.py +0 -0
  20. {thyra-2.1.0 → thyra-2.2.0}/thyra/core/__init__.py +0 -0
  21. {thyra-2.1.0 → thyra-2.2.0}/thyra/core/base_converter.py +0 -0
  22. {thyra-2.1.0 → thyra-2.2.0}/thyra/core/base_extractor.py +0 -0
  23. {thyra-2.1.0 → thyra-2.2.0}/thyra/core/base_reader.py +0 -0
  24. {thyra-2.1.0 → thyra-2.2.0}/thyra/core/registry.py +0 -0
  25. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/__init__.py +0 -0
  26. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/extractors/__init__.py +0 -0
  27. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/extractors/bruker_extractor.py +0 -0
  28. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/extractors/imzml_extractor.py +0 -0
  29. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/extractors/waters_extractor.py +0 -0
  30. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/ontology/__init__.py +0 -0
  31. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/ontology/_ims.py +0 -0
  32. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/ontology/_ms.py +0 -0
  33. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/ontology/_uo.py +0 -0
  34. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/ontology/cache.py +0 -0
  35. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/types.py +0 -0
  36. {thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/validator.py +0 -0
  37. {thyra-2.1.0 → thyra-2.2.0}/thyra/preview.py +0 -0
  38. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/__init__.py +0 -0
  39. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/__init__.py +0 -0
  40. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/base_bruker_reader.py +0 -0
  41. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/folder_structure.py +0 -0
  42. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/mis_parser.py +0 -0
  43. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/rapiflex/__init__.py +0 -0
  44. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/rapiflex/rapiflex_reader.py +0 -0
  45. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/__init__.py +0 -0
  46. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/__init__.py +0 -0
  47. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/dll/LICENCE-BRUKER.txt +0 -0
  48. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/dll/README.md +0 -0
  49. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/dll/timsdata.dll +0 -0
  50. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/dll/timsdata.so +0 -0
  51. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/dll_manager.py +0 -0
  52. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/platform_detector.py +0 -0
  53. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/sdk/sdk_functions.py +0 -0
  54. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/timstof_reader.py +0 -0
  55. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/utils/__init__.py +0 -0
  56. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/utils/batch_processor.py +0 -0
  57. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/utils/coordinate_cache.py +0 -0
  58. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/utils/mass_axis_builder.py +0 -0
  59. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/bruker/timstof/utils/memory_manager.py +0 -0
  60. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/imzml/__init__.py +0 -0
  61. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/imzml/imzml_reader.py +0 -0
  62. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/__init__.py +0 -0
  63. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/imaging_grid.py +0 -0
  64. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/lib/MLReader.dll +0 -0
  65. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/lib/MassLynxRaw.dll +0 -0
  66. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/lib/libMLReader.so +0 -0
  67. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/lib/libMassLynxRaw.so +0 -0
  68. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/masslynx_lib.py +0 -0
  69. {thyra-2.1.0 → thyra-2.2.0}/thyra/readers/waters/waters_reader.py +0 -0
  70. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/__init__.py +0 -0
  71. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/common_axis.py +0 -0
  72. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/constants.py +0 -0
  73. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/data_characteristics.py +0 -0
  74. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/decision_tree.py +0 -0
  75. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/gaps.py +0 -0
  76. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/instrument_detectors.py +0 -0
  77. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/__init__.py +0 -0
  78. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/base_generator.py +0 -0
  79. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/fticr_generator.py +0 -0
  80. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/linear_generator.py +0 -0
  81. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/linear_tof_generator.py +0 -0
  82. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/orbitrap_generator.py +0 -0
  83. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/mass_axis/reflector_tof_generator.py +0 -0
  84. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/strategies/__init__.py +0 -0
  85. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/strategies/base.py +0 -0
  86. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/strategies/nearest_neighbor.py +0 -0
  87. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/strategies/tic_preserving.py +0 -0
  88. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/tic.py +0 -0
  89. {thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/types.py +0 -0
  90. {thyra-2.1.0 → thyra-2.2.0}/thyra/tools/__init__.py +0 -0
  91. {thyra-2.1.0 → thyra-2.2.0}/thyra/tools/check_ontology.py +0 -0
  92. {thyra-2.1.0 → thyra-2.2.0}/thyra/tools/make_example_data.py +0 -0
  93. {thyra-2.1.0 → thyra-2.2.0}/thyra/utils/__init__.py +0 -0
  94. {thyra-2.1.0 → thyra-2.2.0}/thyra/utils/bruker_exceptions.py +0 -0
  95. {thyra-2.1.0 → thyra-2.2.0}/thyra/utils/logging_config.py +0 -0
  96. {thyra-2.1.0 → thyra-2.2.0}/thyra/utils/windows_paths.py +0 -0
  97. {thyra-2.1.0 → thyra-2.2.0}/thyra/utils/zarr_atomic_write.py +0 -0
{thyra-2.1.0 → thyra-2.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: thyra
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- Version: 2.1.0
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+ Version: 2.2.0
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  Summary: A modern Python library for converting Mass Spectrometry Imaging (MSI) data into SpatialData/Zarr format - your portal to spatial omics
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  License: MIT
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  License-File: LICENSE
{thyra-2.1.0 → thyra-2.2.0}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
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  [tool.poetry]
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  name = "thyra"
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- version = "2.1.0"
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+ version = "2.2.0"
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  description = "A modern Python library for converting Mass Spectrometry Imaging (MSI) data into SpatialData/Zarr format - your portal to spatial omics"
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  authors = ["Theodoros Visvikis <t.visvikis@maastrichtuniversity.nl>"]
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  maintainers = ["Theodoros Visvikis <t.visvikis@maastrichtuniversity.nl>"]
{thyra-2.1.0 → thyra-2.2.0}/thyra/__init__.py RENAMED
@@ -36,7 +36,7 @@ warnings.filterwarnings(
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  category=FutureWarning,
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  )
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- __version__ = "2.1.0"
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+ __version__ = "2.2.0"
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  # Import key components - avoid wildcard imports
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  try:
{thyra-2.1.0 → thyra-2.2.0}/LICENSE RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/README.md RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/__main__.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/alignment/__init__.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/alignment/affine.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/config.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/core/registry.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/types.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/metadata/validator.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/readers/__init__.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/gaps.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/tic.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/resampling/types.py RENAMED
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{thyra-2.1.0 → thyra-2.2.0}/thyra/tools/__init__.py RENAMED
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