theurian 0.1.0.dev1__tar.gz → 0.1.0.dev2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (227) hide show
  1. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/.gitignore +5 -0
  2. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/CHANGELOG.md +1246 -1
  3. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/PKG-INFO +4 -4
  4. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/pyproject.toml +3 -3
  5. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/__init__.py +1 -1
  6. theurian-0.1.0.dev2/src/theurian/application/forest_builder.py +479 -0
  7. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/index_builder.py +128 -5
  8. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/migration_engine.py +253 -4
  9. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/project_service.py +45 -0
  10. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/retrieval_service.py +357 -159
  11. theurian-0.1.0.dev2/src/theurian/application/setup_service.py +553 -0
  12. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/setup_steps.py +3 -3
  13. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/visibility.py +84 -0
  14. theurian-0.1.0.dev2/src/theurian/application/withdrawal_purge.py +488 -0
  15. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/commands.py +224 -2
  16. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/index_commands.py +258 -67
  17. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/setup_commands.py +5 -3
  18. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/chunking.py +49 -1
  19. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/enums.py +13 -6
  20. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/errors.py +52 -1
  21. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/knowledge.py +2 -0
  22. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/migration.py +4 -2
  23. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/__init__.py +12 -0
  24. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/canonical_store.py +42 -2
  25. theurian-0.1.0.dev2/src/theurian/domain/ports/index_store.py +341 -0
  26. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/summarization.py +16 -5
  27. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ranking.py +59 -0
  28. theurian-0.1.0.dev2/src/theurian/domain/raptor.py +345 -0
  29. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/retrieval.py +20 -0
  30. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/setup.py +30 -7
  31. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/values.py +41 -3
  32. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/claude/mcp_config.py +94 -17
  33. theurian-0.1.0.dev2/src/theurian/infrastructure/raptor/__init__.py +63 -0
  34. theurian-0.1.0.dev2/src/theurian/infrastructure/raptor/extractive.py +434 -0
  35. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_forest.py +220 -0
  36. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_purge.py +702 -0
  37. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_scan.py +16 -21
  38. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_schema.py +448 -0
  39. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_store.py +672 -177
  40. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/schema.py +22 -0
  41. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/store.py +55 -5
  42. theurian-0.1.0.dev2/src/theurian/mcp/results.py +109 -0
  43. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/mcp/search.py +105 -29
  44. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/mcp/tools.py +121 -44
  45. theurian-0.1.0.dev2/src/theurian/retrieval/__init__.py +48 -0
  46. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/fakes/__init__.py +3 -0
  47. theurian-0.1.0.dev2/tests/fakes/pages.py +53 -0
  48. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/fakes/store.py +14 -1
  49. theurian-0.1.0.dev2/tests/integration/test_absence_proof.py +2689 -0
  50. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_canonical_store.py +44 -1
  51. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_canonical_store_corruption.py +44 -17
  52. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_claude_mcp_config.py +343 -0
  53. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_cli_commands.py +382 -0
  54. theurian-0.1.0.dev2/tests/integration/test_forest_builder.py +929 -0
  55. theurian-0.1.0.dev2/tests/integration/test_forest_builder_scale.py +391 -0
  56. theurian-0.1.0.dev2/tests/integration/test_forest_node_scope.py +252 -0
  57. theurian-0.1.0.dev2/tests/integration/test_forest_purge_equality.py +684 -0
  58. theurian-0.1.0.dev2/tests/integration/test_forest_purge_recompute.py +387 -0
  59. theurian-0.1.0.dev2/tests/integration/test_forest_retrieval.py +649 -0
  60. theurian-0.1.0.dev2/tests/integration/test_forest_store_retrieval.py +441 -0
  61. theurian-0.1.0.dev2/tests/integration/test_gc_during_a_search.py +181 -0
  62. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_index_fallback.py +3 -3
  63. theurian-0.1.0.dev2/tests/integration/test_index_gc_cli.py +346 -0
  64. theurian-0.1.0.dev2/tests/integration/test_index_purge.py +924 -0
  65. theurian-0.1.0.dev2/tests/integration/test_index_purge_differential.py +280 -0
  66. theurian-0.1.0.dev2/tests/integration/test_index_purge_nodes.py +649 -0
  67. theurian-0.1.0.dev2/tests/integration/test_index_schema_v4.py +440 -0
  68. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_index_store.py +436 -68
  69. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_mcp_tools.py +1746 -16
  70. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_retrieval_service.py +232 -83
  71. theurian-0.1.0.dev2/tests/integration/test_scan_exhaustion.py +392 -0
  72. theurian-0.1.0.dev2/tests/integration/test_setup_journal.py +566 -0
  73. theurian-0.1.0.dev2/tests/integration/test_setup_partial_failure.py +719 -0
  74. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_setup_service.py +296 -1
  75. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/integration/test_wire_contract.py +389 -0
  76. theurian-0.1.0.dev2/tests/integration/test_withdrawal_purge.py +705 -0
  77. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_candidate_cut.py +63 -8
  78. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_candidate_depth.py +57 -6
  79. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_cli_help_rendering.py +1 -1
  80. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_examples.py +20 -0
  81. theurian-0.1.0.dev2/tests/unit/test_extractive_summarizer.py +1331 -0
  82. theurian-0.1.0.dev2/tests/unit/test_forest_derivation.py +910 -0
  83. theurian-0.1.0.dev2/tests/unit/test_forest_fanout.py +367 -0
  84. theurian-0.1.0.dev2/tests/unit/test_gate_call_sites.py +475 -0
  85. theurian-0.1.0.dev2/tests/unit/test_migration_engine.py +1066 -0
  86. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_ports.py +16 -0
  87. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_ranking.py +40 -0
  88. theurian-0.1.0.dev2/tests/unit/test_raptor_scope.py +357 -0
  89. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_result_gate_session.py +1 -1
  90. theurian-0.1.0.dev2/tests/unit/test_result_payload.py +88 -0
  91. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_retrieval_depth.py +433 -14
  92. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_schemas.py +175 -12
  93. theurian-0.1.0.dev2/tests/unit/test_scope_isolation.py +230 -0
  94. theurian-0.1.0.dev2/tests/unit/test_setup_changed_paths.py +78 -0
  95. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_setup_claims.py +141 -20
  96. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/tests/unit/test_setup_domain.py +41 -1
  97. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/theurian/schemas/README.md +29 -14
  98. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/theurian/schemas/config/project-config.schema.json +5 -1
  99. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/theurian/schemas/knowledge/retrieval-result.schema.json +27 -2
  100. theurian-0.1.0.dev2/theurian/schemas/mcp/knowledge-status-response.schema.json +66 -0
  101. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/theurian/schemas/migrations/migration.schema.json +27 -5
  102. theurian-0.1.0.dev1/src/theurian/application/setup_service.py +0 -294
  103. theurian-0.1.0.dev1/src/theurian/domain/ports/index_store.py +0 -197
  104. theurian-0.1.0.dev1/src/theurian/infrastructure/raptor/__init__.py +0 -24
  105. theurian-0.1.0.dev1/src/theurian/infrastructure/sqlite/index_schema.py +0 -160
  106. theurian-0.1.0.dev1/src/theurian/mcp/results.py +0 -80
  107. theurian-0.1.0.dev1/src/theurian/retrieval/__init__.py +0 -28
  108. theurian-0.1.0.dev1/tests/integration/test_scan_cache.py +0 -416
  109. theurian-0.1.0.dev1/tests/unit/test_gate_call_sites.py +0 -145
  110. theurian-0.1.0.dev1/tests/unit/test_migration_engine.py +0 -511
  111. theurian-0.1.0.dev1/tests/unit/test_scope_isolation.py +0 -117
  112. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/LICENSE +0 -0
  113. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/README.md +0 -0
  114. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/hatch_build.py +0 -0
  115. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/__init__.py +0 -0
  116. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/ingestion_service.py +0 -0
  117. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/setup_context.py +0 -0
  118. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/application/setup_withholding.py +0 -0
  119. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/__init__.py +0 -0
  120. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/auth_commands.py +0 -0
  121. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/context.py +0 -0
  122. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/cli/main.py +0 -0
  123. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/daemon/__init__.py +0 -0
  124. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/daemon/instance.py +0 -0
  125. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/daemon/runner.py +0 -0
  126. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/daemon/server.py +0 -0
  127. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/__init__.py +0 -0
  128. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/compatibility.py +0 -0
  129. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/context.py +0 -0
  130. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/extras.py +0 -0
  131. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/identifiers.py +0 -0
  132. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ingestion.py +0 -0
  133. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/authorization.py +0 -0
  134. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/daemon_manager.py +0 -0
  135. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/determinism.py +0 -0
  136. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/embedding.py +0 -0
  137. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/mcp_client_config.py +0 -0
  138. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/object_store.py +0 -0
  139. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/reranking.py +0 -0
  140. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/review_provider.py +0 -0
  141. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/secret_store.py +0 -0
  142. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/source_parser.py +0 -0
  143. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/specification_provider.py +0 -0
  144. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/ports/vector_store.py +0 -0
  145. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/project.py +0 -0
  146. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/review.py +0 -0
  147. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/specification.py +0 -0
  148. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/domain/state.py +0 -0
  149. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/indexing/__init__.py +0 -0
  150. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/__init__.py +0 -0
  151. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/claude/__init__.py +0 -0
  152. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/determinism.py +0 -0
  153. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/embedding/__init__.py +0 -0
  154. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/embedding/hashing.py +0 -0
  155. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/__init__.py +0 -0
  156. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/migration_loader.py +0 -0
  157. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/markdown.py +0 -0
  158. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/openapi.py +0 -0
  159. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/registry.py +0 -0
  160. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/structured.py +0 -0
  161. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/git/__init__.py +0 -0
  162. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/github/__init__.py +0 -0
  163. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/secrets/__init__.py +0 -0
  164. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/secrets/file_store.py +0 -0
  165. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/__init__.py +0 -0
  166. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/launchagent.py +0 -0
  167. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/runner.py +0 -0
  168. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/systemd_user.py +0 -0
  169. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/__init__.py +0 -0
  170. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/connection.py +0 -0
  171. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_query.py +0 -0
  172. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/infrastructure/vector/__init__.py +0 -0
  173. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/ingestion/__init__.py +0 -0
  174. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/mcp/__init__.py +0 -0
  175. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/migrations/__init__.py +0 -0
  176. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/normalization/__init__.py +0 -0
  177. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/normalization/projection.py +0 -0
  178. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/observability/__init__.py +0 -0
  179. {theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/src/theurian/review/__init__.py +0 -0
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{theurian-0.1.0.dev1 → theurian-0.1.0.dev2}/.gitignore RENAMED
@@ -9,6 +9,11 @@ dist/
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  .mypy_cache/
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  .ruff_cache/
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  .pytest_cache/
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+ # hypothesis writes a Unicode table and a constants cache here, whatever
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+ # `settings(database=None)` says about the example database. It ships its own
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+ # `.gitignore` inside the directory; this line is so a reader of *this* file
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+ # knows what the directory is.
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+ .hypothesis/
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  .coverage
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  .coverage.*
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  coverage.xml