theurian 0.1.0.dev0__tar.gz → 0.1.0.dev2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/.gitignore +5 -0
  2. theurian-0.1.0.dev2/CHANGELOG.md +2900 -0
  3. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/PKG-INFO +29 -5
  4. theurian-0.1.0.dev2/README.md +27 -0
  5. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/pyproject.toml +3 -3
  6. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/__init__.py +1 -1
  7. theurian-0.1.0.dev2/src/theurian/application/forest_builder.py +479 -0
  8. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/index_builder.py +128 -5
  9. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/migration_engine.py +253 -4
  10. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/project_service.py +45 -0
  11. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/retrieval_service.py +357 -159
  12. theurian-0.1.0.dev2/src/theurian/application/setup_service.py +553 -0
  13. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/setup_steps.py +147 -19
  14. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/visibility.py +84 -0
  15. theurian-0.1.0.dev2/src/theurian/application/withdrawal_purge.py +488 -0
  16. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/commands.py +266 -5
  17. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/index_commands.py +258 -67
  18. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/main.py +15 -0
  19. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/setup_commands.py +18 -5
  20. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/daemon/instance.py +12 -0
  21. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/daemon/runner.py +1 -3
  22. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/chunking.py +49 -1
  23. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/compatibility.py +91 -4
  24. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/enums.py +13 -6
  25. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/errors.py +52 -1
  26. theurian-0.1.0.dev2/src/theurian/domain/extras.py +90 -0
  27. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/knowledge.py +2 -0
  28. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/migration.py +4 -2
  29. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/__init__.py +12 -0
  30. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/canonical_store.py +42 -2
  31. theurian-0.1.0.dev2/src/theurian/domain/ports/index_store.py +341 -0
  32. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/summarization.py +16 -5
  33. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ranking.py +59 -0
  34. theurian-0.1.0.dev2/src/theurian/domain/raptor.py +345 -0
  35. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/retrieval.py +20 -0
  36. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/setup.py +30 -7
  37. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/values.py +41 -3
  38. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/claude/mcp_config.py +94 -17
  39. theurian-0.1.0.dev2/src/theurian/infrastructure/raptor/__init__.py +63 -0
  40. theurian-0.1.0.dev2/src/theurian/infrastructure/raptor/extractive.py +434 -0
  41. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_forest.py +220 -0
  42. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_purge.py +702 -0
  43. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_scan.py +16 -21
  44. theurian-0.1.0.dev2/src/theurian/infrastructure/sqlite/index_schema.py +448 -0
  45. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_store.py +672 -177
  46. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/schema.py +22 -0
  47. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/store.py +55 -5
  48. theurian-0.1.0.dev2/src/theurian/mcp/results.py +109 -0
  49. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/mcp/search.py +105 -29
  50. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/mcp/tools.py +121 -44
  51. theurian-0.1.0.dev2/src/theurian/retrieval/__init__.py +48 -0
  52. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/fakes/__init__.py +3 -0
  53. theurian-0.1.0.dev2/tests/fakes/pages.py +53 -0
  54. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/fakes/store.py +14 -1
  55. theurian-0.1.0.dev2/tests/integration/test_absence_proof.py +2689 -0
  56. theurian-0.1.0.dev2/tests/integration/test_bare_install.py +352 -0
  57. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_canonical_store.py +44 -1
  58. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_canonical_store_corruption.py +44 -17
  59. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_claude_mcp_config.py +343 -0
  60. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_cli_commands.py +382 -0
  61. theurian-0.1.0.dev2/tests/integration/test_cli_help_without_rich.py +154 -0
  62. theurian-0.1.0.dev2/tests/integration/test_forest_builder.py +929 -0
  63. theurian-0.1.0.dev2/tests/integration/test_forest_builder_scale.py +391 -0
  64. theurian-0.1.0.dev2/tests/integration/test_forest_node_scope.py +252 -0
  65. theurian-0.1.0.dev2/tests/integration/test_forest_purge_equality.py +684 -0
  66. theurian-0.1.0.dev2/tests/integration/test_forest_purge_recompute.py +387 -0
  67. theurian-0.1.0.dev2/tests/integration/test_forest_retrieval.py +649 -0
  68. theurian-0.1.0.dev2/tests/integration/test_forest_store_retrieval.py +441 -0
  69. theurian-0.1.0.dev2/tests/integration/test_gc_during_a_search.py +181 -0
  70. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_index_fallback.py +3 -3
  71. theurian-0.1.0.dev2/tests/integration/test_index_gc_cli.py +346 -0
  72. theurian-0.1.0.dev2/tests/integration/test_index_purge.py +924 -0
  73. theurian-0.1.0.dev2/tests/integration/test_index_purge_differential.py +280 -0
  74. theurian-0.1.0.dev2/tests/integration/test_index_purge_nodes.py +649 -0
  75. theurian-0.1.0.dev2/tests/integration/test_index_schema_v4.py +440 -0
  76. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_index_store.py +436 -68
  77. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_mcp_tools.py +1746 -16
  78. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_retrieval_service.py +232 -83
  79. theurian-0.1.0.dev2/tests/integration/test_scan_exhaustion.py +392 -0
  80. theurian-0.1.0.dev2/tests/integration/test_session_start_hook.py +385 -0
  81. theurian-0.1.0.dev2/tests/integration/test_setup_journal.py +566 -0
  82. theurian-0.1.0.dev2/tests/integration/test_setup_partial_failure.py +719 -0
  83. theurian-0.1.0.dev2/tests/integration/test_setup_probe_assertions.py +286 -0
  84. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_setup_report_withholding.py +41 -2
  85. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_setup_service.py +320 -12
  86. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/integration/test_wire_contract.py +389 -0
  87. theurian-0.1.0.dev2/tests/integration/test_withdrawal_purge.py +705 -0
  88. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_candidate_cut.py +63 -8
  89. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_candidate_depth.py +57 -6
  90. theurian-0.1.0.dev2/tests/unit/test_cli_help_rendering.py +359 -0
  91. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_compatibility.py +53 -2
  92. theurian-0.1.0.dev2/tests/unit/test_daemon_extra.py +172 -0
  93. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_examples.py +20 -0
  94. theurian-0.1.0.dev2/tests/unit/test_extractive_summarizer.py +1331 -0
  95. theurian-0.1.0.dev2/tests/unit/test_forest_derivation.py +910 -0
  96. theurian-0.1.0.dev2/tests/unit/test_forest_fanout.py +367 -0
  97. theurian-0.1.0.dev2/tests/unit/test_gate_call_sites.py +475 -0
  98. theurian-0.1.0.dev2/tests/unit/test_install_claims.py +134 -0
  99. theurian-0.1.0.dev2/tests/unit/test_migration_engine.py +1066 -0
  100. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_plugin_boundary.py +338 -4
  101. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_ports.py +16 -0
  102. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_ranking.py +40 -0
  103. theurian-0.1.0.dev2/tests/unit/test_raptor_scope.py +357 -0
  104. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_result_gate_session.py +1 -1
  105. theurian-0.1.0.dev2/tests/unit/test_result_payload.py +88 -0
  106. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_retrieval_depth.py +433 -14
  107. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_schemas.py +175 -12
  108. theurian-0.1.0.dev2/tests/unit/test_scope_isolation.py +230 -0
  109. theurian-0.1.0.dev2/tests/unit/test_setup_changed_paths.py +78 -0
  110. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_setup_claims.py +256 -26
  111. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/tests/unit/test_setup_domain.py +41 -1
  112. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/theurian/schemas/README.md +29 -14
  113. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/theurian/schemas/config/project-config.schema.json +5 -1
  114. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/theurian/schemas/knowledge/retrieval-result.schema.json +27 -2
  115. theurian-0.1.0.dev2/theurian/schemas/mcp/knowledge-status-response.schema.json +66 -0
  116. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/theurian/schemas/migrations/migration.schema.json +27 -5
  117. theurian-0.1.0.dev0/CHANGELOG.md +0 -1412
  118. theurian-0.1.0.dev0/README.md +0 -3
  119. theurian-0.1.0.dev0/src/theurian/application/setup_service.py +0 -294
  120. theurian-0.1.0.dev0/src/theurian/domain/ports/index_store.py +0 -197
  121. theurian-0.1.0.dev0/src/theurian/infrastructure/raptor/__init__.py +0 -24
  122. theurian-0.1.0.dev0/src/theurian/infrastructure/sqlite/index_schema.py +0 -160
  123. theurian-0.1.0.dev0/src/theurian/mcp/results.py +0 -80
  124. theurian-0.1.0.dev0/src/theurian/retrieval/__init__.py +0 -28
  125. theurian-0.1.0.dev0/tests/integration/test_scan_cache.py +0 -416
  126. theurian-0.1.0.dev0/tests/unit/test_gate_call_sites.py +0 -145
  127. theurian-0.1.0.dev0/tests/unit/test_migration_engine.py +0 -511
  128. theurian-0.1.0.dev0/tests/unit/test_scope_isolation.py +0 -117
  129. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/LICENSE +0 -0
  130. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/hatch_build.py +0 -0
  131. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/__init__.py +0 -0
  132. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/ingestion_service.py +0 -0
  133. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/setup_context.py +0 -0
  134. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/application/setup_withholding.py +0 -0
  135. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/__init__.py +0 -0
  136. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/auth_commands.py +0 -0
  137. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/cli/context.py +0 -0
  138. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/daemon/__init__.py +0 -0
  139. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/daemon/server.py +0 -0
  140. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/__init__.py +0 -0
  141. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/context.py +0 -0
  142. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/identifiers.py +0 -0
  143. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ingestion.py +0 -0
  144. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/authorization.py +0 -0
  145. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/daemon_manager.py +0 -0
  146. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/determinism.py +0 -0
  147. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/embedding.py +0 -0
  148. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/mcp_client_config.py +0 -0
  149. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/object_store.py +0 -0
  150. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/reranking.py +0 -0
  151. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/review_provider.py +0 -0
  152. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/secret_store.py +0 -0
  153. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/source_parser.py +0 -0
  154. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/specification_provider.py +0 -0
  155. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/ports/vector_store.py +0 -0
  156. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/project.py +0 -0
  157. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/review.py +0 -0
  158. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/specification.py +0 -0
  159. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/domain/state.py +0 -0
  160. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/indexing/__init__.py +0 -0
  161. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/__init__.py +0 -0
  162. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/claude/__init__.py +0 -0
  163. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/determinism.py +0 -0
  164. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/embedding/__init__.py +0 -0
  165. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/embedding/hashing.py +0 -0
  166. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/__init__.py +0 -0
  167. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/migration_loader.py +0 -0
  168. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/markdown.py +0 -0
  169. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/openapi.py +0 -0
  170. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/registry.py +0 -0
  171. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/filesystem/parsers/structured.py +0 -0
  172. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/git/__init__.py +0 -0
  173. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/github/__init__.py +0 -0
  174. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/secrets/__init__.py +0 -0
  175. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/secrets/file_store.py +0 -0
  176. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/__init__.py +0 -0
  177. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/launchagent.py +0 -0
  178. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/runner.py +0 -0
  179. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/services/systemd_user.py +0 -0
  180. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/__init__.py +0 -0
  181. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/connection.py +0 -0
  182. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/sqlite/index_query.py +0 -0
  183. {theurian-0.1.0.dev0 → theurian-0.1.0.dev2}/src/theurian/infrastructure/vector/__init__.py +0 -0
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@@ -9,6 +9,11 @@ dist/
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  .mypy_cache/
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  .ruff_cache/
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  .pytest_cache/
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+ # hypothesis writes a Unicode table and a constants cache here, whatever
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+ # `settings(database=None)` says about the example database. It ships its own
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+ # `.gitignore` inside the directory; this line is so a reader of *this* file
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+ # knows what the directory is.
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+ .hypothesis/
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  .coverage
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  .coverage.*
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  coverage.xml