terraflux-py 1.59.0__tar.gz

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  1. terraflux_py-1.59.0/.gitignore +11 -0
  2. terraflux_py-1.59.0/CHANGELOG.md +3387 -0
  3. terraflux_py-1.59.0/CMakeLists.txt +554 -0
  4. terraflux_py-1.59.0/DOCUMENTATION.md +2187 -0
  5. terraflux_py-1.59.0/LICENSE +674 -0
  6. terraflux_py-1.59.0/PKG-INFO +247 -0
  7. terraflux_py-1.59.0/README.md +186 -0
  8. terraflux_py-1.59.0/compat/landschaft/LICENSE +674 -0
  9. terraflux_py-1.59.0/compat/landschaft/README.md +18 -0
  10. terraflux_py-1.59.0/compat/landschaft/pyproject.toml +33 -0
  11. terraflux_py-1.59.0/compat/landschaft/src/landschaft/__init__.py +48 -0
  12. terraflux_py-1.59.0/pyproject.toml +125 -0
  13. terraflux_py-1.59.0/src/cpp/bindings.cpp +1592 -0
  14. terraflux_py-1.59.0/src/cpp/bio/cluster.cpp +394 -0
  15. terraflux_py-1.59.0/src/cpp/bio/cluster.hpp +63 -0
  16. terraflux_py-1.59.0/src/cpp/bio/conditions.cpp +689 -0
  17. terraflux_py-1.59.0/src/cpp/bio/conditions.hpp +139 -0
  18. terraflux_py-1.59.0/src/cpp/bio/indices.cpp +2879 -0
  19. terraflux_py-1.59.0/src/cpp/bio/indices.hpp +113 -0
  20. terraflux_py-1.59.0/src/cpp/bio/perlmath.hpp +42 -0
  21. terraflux_py-1.59.0/src/cpp/bio/phylo.cpp +244 -0
  22. terraflux_py-1.59.0/src/cpp/bio/phylo.hpp +103 -0
  23. terraflux_py-1.59.0/src/cpp/bio/phylocom.cpp +886 -0
  24. terraflux_py-1.59.0/src/cpp/bio/phylocom.hpp +131 -0
  25. terraflux_py-1.59.0/src/cpp/bio/props.cpp +318 -0
  26. terraflux_py-1.59.0/src/cpp/bio/props.hpp +94 -0
  27. terraflux_py-1.59.0/src/cpp/bio/python.cpp +469 -0
  28. terraflux_py-1.59.0/src/cpp/bio/python.hpp +13 -0
  29. terraflux_py-1.59.0/src/cpp/bio/randomise.cpp +908 -0
  30. terraflux_py-1.59.0/src/cpp/bio/randomise.hpp +78 -0
  31. terraflux_py-1.59.0/src/cpp/circuit/circuitscape.cpp +1085 -0
  32. terraflux_py-1.59.0/src/cpp/circuit/circuitscape.hpp +143 -0
  33. terraflux_py-1.59.0/src/cpp/circuit/grid.cpp +212 -0
  34. terraflux_py-1.59.0/src/cpp/circuit/grid.hpp +66 -0
  35. terraflux_py-1.59.0/src/cpp/circuit/omniscape.cpp +610 -0
  36. terraflux_py-1.59.0/src/cpp/circuit/omniscape.hpp +66 -0
  37. terraflux_py-1.59.0/src/cpp/circuit/python.cpp +568 -0
  38. terraflux_py-1.59.0/src/cpp/circuit/python.hpp +13 -0
  39. terraflux_py-1.59.0/src/cpp/circuit/system.cpp +1018 -0
  40. terraflux_py-1.59.0/src/cpp/circuit/system.hpp +149 -0
  41. terraflux_py-1.59.0/src/cpp/conn/cost.cpp +311 -0
  42. terraflux_py-1.59.0/src/cpp/conn/cost.hpp +61 -0
  43. terraflux_py-1.59.0/src/cpp/conn/graph.cpp +1013 -0
  44. terraflux_py-1.59.0/src/cpp/conn/graph.hpp +146 -0
  45. terraflux_py-1.59.0/src/cpp/conn/nodes.cpp +317 -0
  46. terraflux_py-1.59.0/src/cpp/conn/nodes.hpp +61 -0
  47. terraflux_py-1.59.0/src/cpp/cost/frontal_lu.cpp +323 -0
  48. terraflux_py-1.59.0/src/cpp/cost/frontal_lu.hpp +44 -0
  49. terraflux_py-1.59.0/src/cpp/cost/geodesic.cpp +122 -0
  50. terraflux_py-1.59.0/src/cpp/cost/geodesic.hpp +31 -0
  51. terraflux_py-1.59.0/src/cpp/cost/geographiclib/geodesic.h +837 -0
  52. terraflux_py-1.59.0/src/cpp/cost/geographiclib/geodesic.inc +2022 -0
  53. terraflux_py-1.59.0/src/cpp/cost/python.cpp +516 -0
  54. terraflux_py-1.59.0/src/cpp/cost/python.hpp +13 -0
  55. terraflux_py-1.59.0/src/cpp/cost/randomwalk.cpp +345 -0
  56. terraflux_py-1.59.0/src/cpp/cost/randomwalk.hpp +57 -0
  57. terraflux_py-1.59.0/src/cpp/cost/rsp.cpp +737 -0
  58. terraflux_py-1.59.0/src/cpp/cost/rsp.hpp +60 -0
  59. terraflux_py-1.59.0/src/cpp/cost/shortest.cpp +384 -0
  60. terraflux_py-1.59.0/src/cpp/cost/shortest.hpp +39 -0
  61. terraflux_py-1.59.0/src/cpp/cost/transition.cpp +233 -0
  62. terraflux_py-1.59.0/src/cpp/cost/transition.hpp +88 -0
  63. terraflux_py-1.59.0/src/cpp/env.hpp +16 -0
  64. terraflux_py-1.59.0/src/cpp/gtb/accounting.cpp +119 -0
  65. terraflux_py-1.59.0/src/cpp/gtb/accounting.hpp +50 -0
  66. terraflux_py-1.59.0/src/cpp/gtb/change.cpp +462 -0
  67. terraflux_py-1.59.0/src/cpp/gtb/change.hpp +87 -0
  68. terraflux_py-1.59.0/src/cpp/gtb/contagion.cpp +459 -0
  69. terraflux_py-1.59.0/src/cpp/gtb/contagion.hpp +51 -0
  70. terraflux_py-1.59.0/src/cpp/gtb/distance.cpp +104 -0
  71. terraflux_py-1.59.0/src/cpp/gtb/distance.hpp +30 -0
  72. terraflux_py-1.59.0/src/cpp/gtb/entropy.cpp +164 -0
  73. terraflux_py-1.59.0/src/cpp/gtb/entropy.hpp +26 -0
  74. terraflux_py-1.59.0/src/cpp/gtb/fad.cpp +361 -0
  75. terraflux_py-1.59.0/src/cpp/gtb/fad.hpp +62 -0
  76. terraflux_py-1.59.0/src/cpp/gtb/fos.cpp +160 -0
  77. terraflux_py-1.59.0/src/cpp/gtb/fos.hpp +18 -0
  78. terraflux_py-1.59.0/src/cpp/gtb/grayspatcon.cpp +270 -0
  79. terraflux_py-1.59.0/src/cpp/gtb/grayspatcon.hpp +32 -0
  80. terraflux_py-1.59.0/src/cpp/gtb/gtn.cpp +47 -0
  81. terraflux_py-1.59.0/src/cpp/gtb/gtn.hpp +21 -0
  82. terraflux_py-1.59.0/src/cpp/gtb/image.hpp +85 -0
  83. terraflux_py-1.59.0/src/cpp/gtb/influence.cpp +465 -0
  84. terraflux_py-1.59.0/src/cpp/gtb/influence.hpp +77 -0
  85. terraflux_py-1.59.0/src/cpp/gtb/isochrone.cpp +67 -0
  86. terraflux_py-1.59.0/src/cpp/gtb/isochrone.hpp +19 -0
  87. terraflux_py-1.59.0/src/cpp/gtb/morphology.cpp +532 -0
  88. terraflux_py-1.59.0/src/cpp/gtb/morphology.hpp +59 -0
  89. terraflux_py-1.59.0/src/cpp/gtb/mosaic.cpp +358 -0
  90. terraflux_py-1.59.0/src/cpp/gtb/mosaic.hpp +45 -0
  91. terraflux_py-1.59.0/src/cpp/gtb/mspa.cpp +417 -0
  92. terraflux_py-1.59.0/src/cpp/gtb/mspa.hpp +37 -0
  93. terraflux_py-1.59.0/src/cpp/gtb/pool.hpp +116 -0
  94. terraflux_py-1.59.0/src/cpp/gtb/primitives.cpp +1137 -0
  95. terraflux_py-1.59.0/src/cpp/gtb/primitives.hpp +127 -0
  96. terraflux_py-1.59.0/src/cpp/gtb/restoration.cpp +384 -0
  97. terraflux_py-1.59.0/src/cpp/gtb/restoration.hpp +58 -0
  98. terraflux_py-1.59.0/src/cpp/gtb/spa.cpp +183 -0
  99. terraflux_py-1.59.0/src/cpp/gtb/spa.hpp +30 -0
  100. terraflux_py-1.59.0/src/cpp/gtb/thinning.cpp +288 -0
  101. terraflux_py-1.59.0/src/cpp/hydro/basins.cpp +125 -0
  102. terraflux_py-1.59.0/src/cpp/hydro/breach.cpp +232 -0
  103. terraflux_py-1.59.0/src/cpp/hydro/hydro.cpp +544 -0
  104. terraflux_py-1.59.0/src/cpp/hydro/hydro.hpp +141 -0
  105. terraflux_py-1.59.0/src/cpp/hydro/mfd.cpp +577 -0
  106. terraflux_py-1.59.0/src/cpp/hydro/python.cpp +330 -0
  107. terraflux_py-1.59.0/src/cpp/hydro/python.hpp +13 -0
  108. terraflux_py-1.59.0/src/cpp/hydro/rivers.cpp +107 -0
  109. terraflux_py-1.59.0/src/cpp/io/earcut/LICENSE +15 -0
  110. terraflux_py-1.59.0/src/cpp/io/earcut/earcut.hpp +816 -0
  111. terraflux_py-1.59.0/src/cpp/io/exact/LICENSE +202 -0
  112. terraflux_py-1.59.0/src/cpp/io/exact/box.cpp +137 -0
  113. terraflux_py-1.59.0/src/cpp/io/exact/box.h +153 -0
  114. terraflux_py-1.59.0/src/cpp/io/exact/cell.cpp +176 -0
  115. terraflux_py-1.59.0/src/cpp/io/exact/cell.h +78 -0
  116. terraflux_py-1.59.0/src/cpp/io/exact/coordinate.cpp +23 -0
  117. terraflux_py-1.59.0/src/cpp/io/exact/coordinate.h +53 -0
  118. terraflux_py-1.59.0/src/cpp/io/exact/coverage.cpp +329 -0
  119. terraflux_py-1.59.0/src/cpp/io/exact/coverage.hpp +40 -0
  120. terraflux_py-1.59.0/src/cpp/io/exact/crossing.h +44 -0
  121. terraflux_py-1.59.0/src/cpp/io/exact/grid.cpp +100 -0
  122. terraflux_py-1.59.0/src/cpp/io/exact/grid.h +359 -0
  123. terraflux_py-1.59.0/src/cpp/io/exact/matrix.h +149 -0
  124. terraflux_py-1.59.0/src/cpp/io/exact/measures.cpp +53 -0
  125. terraflux_py-1.59.0/src/cpp/io/exact/measures.h +33 -0
  126. terraflux_py-1.59.0/src/cpp/io/exact/perimeter_distance.cpp +59 -0
  127. terraflux_py-1.59.0/src/cpp/io/exact/perimeter_distance.h +32 -0
  128. terraflux_py-1.59.0/src/cpp/io/exact/side.cpp +42 -0
  129. terraflux_py-1.59.0/src/cpp/io/exact/side.h +33 -0
  130. terraflux_py-1.59.0/src/cpp/io/exact/traversal.cpp +81 -0
  131. terraflux_py-1.59.0/src/cpp/io/exact/traversal.h +66 -0
  132. terraflux_py-1.59.0/src/cpp/io/exact/traversal_areas.cpp +115 -0
  133. terraflux_py-1.59.0/src/cpp/io/exact/traversal_areas.h +28 -0
  134. terraflux_py-1.59.0/src/cpp/io/exact.cpp +125 -0
  135. terraflux_py-1.59.0/src/cpp/io/exact.hpp +37 -0
  136. terraflux_py-1.59.0/src/cpp/io/io.hpp +124 -0
  137. terraflux_py-1.59.0/src/cpp/io/python.cpp +612 -0
  138. terraflux_py-1.59.0/src/cpp/io/python.hpp +13 -0
  139. terraflux_py-1.59.0/src/cpp/io/reclass.cpp +159 -0
  140. terraflux_py-1.59.0/src/cpp/io/triangulate.cpp +42 -0
  141. terraflux_py-1.59.0/src/cpp/io/view.cpp +61 -0
  142. terraflux_py-1.59.0/src/cpp/io/warp.cpp +1395 -0
  143. terraflux_py-1.59.0/src/cpp/io/warp.hpp +130 -0
  144. terraflux_py-1.59.0/src/cpp/io/zonal.cpp +669 -0
  145. terraflux_py-1.59.0/src/cpp/lsm/extended.hpp +376 -0
  146. terraflux_py-1.59.0/src/cpp/lsm/fragstats.cpp +389 -0
  147. terraflux_py-1.59.0/src/cpp/lsm/geometry.cpp +1142 -0
  148. terraflux_py-1.59.0/src/cpp/lsm/landscape.cpp +892 -0
  149. terraflux_py-1.59.0/src/cpp/lsm/landscape.hpp +484 -0
  150. terraflux_py-1.59.0/src/cpp/lsm/metrics.cpp +972 -0
  151. terraflux_py-1.59.0/src/cpp/lsm/parallel.hpp +56 -0
  152. terraflux_py-1.59.0/src/cpp/lsm/rasterize.cpp +300 -0
  153. terraflux_py-1.59.0/src/cpp/lsm/rlm.cpp +402 -0
  154. terraflux_py-1.59.0/src/cpp/lsm/rmath.hpp +439 -0
  155. terraflux_py-1.59.0/src/cpp/lsm/table.cpp +258 -0
  156. terraflux_py-1.59.0/src/cpp/lsm/tiled.cpp +1058 -0
  157. terraflux_py-1.59.0/src/cpp/lsm/utils.cpp +624 -0
  158. terraflux_py-1.59.0/src/cpp/lsm/x87_msvc.asm +396 -0
  159. terraflux_py-1.59.0/src/cpp/move/amt.cpp +195 -0
  160. terraflux_py-1.59.0/src/cpp/move/amt.hpp +66 -0
  161. terraflux_py-1.59.0/src/cpp/move/distr.cpp +612 -0
  162. terraflux_py-1.59.0/src/cpp/move/distr.hpp +90 -0
  163. terraflux_py-1.59.0/src/cpp/move/geo.cpp +173 -0
  164. terraflux_py-1.59.0/src/cpp/move/geo.hpp +58 -0
  165. terraflux_py-1.59.0/src/cpp/move/geodesic_proj.cpp +97 -0
  166. terraflux_py-1.59.0/src/cpp/move/python.cpp +340 -0
  167. terraflux_py-1.59.0/src/cpp/move/python.hpp +13 -0
  168. terraflux_py-1.59.0/src/cpp/move/rnmath.cpp +204 -0
  169. terraflux_py-1.59.0/src/cpp/move/rnmath.hpp +26 -0
  170. terraflux_py-1.59.0/src/cpp/move/track.cpp +131 -0
  171. terraflux_py-1.59.0/src/cpp/move/track.hpp +42 -0
  172. terraflux_py-1.59.0/src/cpp/move/vendor/geographiclib-c-2.1/LICENSE +26 -0
  173. terraflux_py-1.59.0/src/cpp/move/vendor/geographiclib-c-2.1/geodesic.c +2028 -0
  174. terraflux_py-1.59.0/src/cpp/move/vendor/geographiclib-c-2.1/geodesic.h +837 -0
  175. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/bd0.c +346 -0
  176. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/bessel.h +142 -0
  177. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/bessel_i.c +480 -0
  178. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/chebyshev.c +87 -0
  179. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/cospi.c +103 -0
  180. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/dgamma.c +74 -0
  181. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/dpois.c +86 -0
  182. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/dpq.h +128 -0
  183. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/gamma.c +219 -0
  184. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/gamma_cody.c +244 -0
  185. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/lgamma.c +128 -0
  186. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/lgammacor.c +88 -0
  187. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/nmath.h +123 -0
  188. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/pgamma_part.c +215 -0
  189. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/rgamma.c +215 -0
  190. terraflux_py-1.59.0/src/cpp/move/vendor/rmath-4.4.2/stirlerr.c +152 -0
  191. terraflux_py-1.59.0/src/cpp/nlm/basic.cpp +180 -0
  192. terraflux_py-1.59.0/src/cpp/nlm/cluster.cpp +193 -0
  193. terraflux_py-1.59.0/src/cpp/nlm/distance.cpp +257 -0
  194. terraflux_py-1.59.0/src/cpp/nlm/models.hpp +115 -0
  195. terraflux_py-1.59.0/src/cpp/nlm/mosaic.cpp +302 -0
  196. terraflux_py-1.59.0/src/cpp/nlm/python.cpp +463 -0
  197. terraflux_py-1.59.0/src/cpp/nlm/python.hpp +13 -0
  198. terraflux_py-1.59.0/src/cpp/nlm/rfft.cpp +693 -0
  199. terraflux_py-1.59.0/src/cpp/nlm/rfft.hpp +29 -0
  200. terraflux_py-1.59.0/src/cpp/nlm/rng.cpp +885 -0
  201. terraflux_py-1.59.0/src/cpp/nlm/rng.hpp +146 -0
  202. terraflux_py-1.59.0/src/cpp/nlm/spectral.cpp +151 -0
  203. terraflux_py-1.59.0/src/cpp/nlm/stdmodels.cpp +200 -0
  204. terraflux_py-1.59.0/src/cpp/nlm/tess.cpp +146 -0
  205. terraflux_py-1.59.0/src/cpp/opt/actions.cpp +1070 -0
  206. terraflux_py-1.59.0/src/cpp/opt/actions.hpp +137 -0
  207. terraflux_py-1.59.0/src/cpp/opt/bundle.hpp +137 -0
  208. terraflux_py-1.59.0/src/cpp/opt/closure.cpp +790 -0
  209. terraflux_py-1.59.0/src/cpp/opt/closure.hpp +78 -0
  210. terraflux_py-1.59.0/src/cpp/opt/connect.cpp +165 -0
  211. terraflux_py-1.59.0/src/cpp/opt/connect.hpp +69 -0
  212. terraflux_py-1.59.0/src/cpp/opt/cover.cpp +842 -0
  213. terraflux_py-1.59.0/src/cpp/opt/cover.hpp +46 -0
  214. terraflux_py-1.59.0/src/cpp/opt/cut.cpp +217 -0
  215. terraflux_py-1.59.0/src/cpp/opt/cut.hpp +51 -0
  216. terraflux_py-1.59.0/src/cpp/opt/eval.cpp +315 -0
  217. terraflux_py-1.59.0/src/cpp/opt/eval.hpp +52 -0
  218. terraflux_py-1.59.0/src/cpp/opt/features.cpp +82 -0
  219. terraflux_py-1.59.0/src/cpp/opt/features.hpp +49 -0
  220. terraflux_py-1.59.0/src/cpp/opt/highs_patch.cmake +82 -0
  221. terraflux_py-1.59.0/src/cpp/opt/marxan.cpp +863 -0
  222. terraflux_py-1.59.0/src/cpp/opt/marxan.hpp +132 -0
  223. terraflux_py-1.59.0/src/cpp/opt/maxflow.cpp +288 -0
  224. terraflux_py-1.59.0/src/cpp/opt/maxflow.hpp +69 -0
  225. terraflux_py-1.59.0/src/cpp/opt/milp.cpp +351 -0
  226. terraflux_py-1.59.0/src/cpp/opt/milp.hpp +138 -0
  227. terraflux_py-1.59.0/src/cpp/opt/patch.cpp +558 -0
  228. terraflux_py-1.59.0/src/cpp/opt/patch.hpp +59 -0
  229. terraflux_py-1.59.0/src/cpp/opt/proxirr.cpp +85 -0
  230. terraflux_py-1.59.0/src/cpp/opt/proxirr.hpp +28 -0
  231. terraflux_py-1.59.0/src/cpp/opt/python.cpp +897 -0
  232. terraflux_py-1.59.0/src/cpp/opt/python.hpp +13 -0
  233. terraflux_py-1.59.0/src/cpp/opt/wide.cpp +1058 -0
  234. terraflux_py-1.59.0/src/cpp/opt/wide.hpp +56 -0
  235. terraflux_py-1.59.0/src/cpp/opt/zones.cpp +853 -0
  236. terraflux_py-1.59.0/src/cpp/opt/zones.hpp +40 -0
  237. terraflux_py-1.59.0/src/cpp/opt/zones_cut.cpp +561 -0
  238. terraflux_py-1.59.0/src/cpp/opt/zones_cut.hpp +54 -0
  239. terraflux_py-1.59.0/src/cpp/opt/zones_wide.cpp +723 -0
  240. terraflux_py-1.59.0/src/cpp/opt/zones_wide.hpp +32 -0
  241. terraflux_py-1.59.0/src/cpp/prio/buffer.cpp +128 -0
  242. terraflux_py-1.59.0/src/cpp/prio/buffer.hpp +174 -0
  243. terraflux_py-1.59.0/src/cpp/prio/data.cpp +529 -0
  244. terraflux_py-1.59.0/src/cpp/prio/prio.hpp +166 -0
  245. terraflux_py-1.59.0/src/cpp/prio/python.cpp +348 -0
  246. terraflux_py-1.59.0/src/cpp/prio/python.hpp +13 -0
  247. terraflux_py-1.59.0/src/cpp/prio/rank.cpp +1324 -0
  248. terraflux_py-1.59.0/src/cpp/prio/runs.hpp +147 -0
  249. terraflux_py-1.59.0/src/cpp/prio/vdt.hpp +84 -0
  250. terraflux_py-1.59.0/src/cpp/rest/habitat.cpp +170 -0
  251. terraflux_py-1.59.0/src/cpp/rest/habitat.hpp +48 -0
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  738. terraflux_py-1.59.0/src/terraflux/surface/data/orelevation.tif +0 -0
  739. terraflux_py-1.59.0/src/terraflux/surface/data/orforest.tif +0 -0
  740. terraflux_py-1.59.0/src/terraflux/uncertainty.py +433 -0
  741. terraflux_py-1.59.0/src/terraflux/validation.py +144 -0
terraflux_py-1.59.0/.gitignore ADDED
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+ build/
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+ dist/
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+ *.egg-info/
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+ __pycache__/
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+ *.py[cod]
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+ *.pyd
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+ *.so
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+ .pytest_cache/
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+ .venv/
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+ *.aux.xml
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+ site/