tequila-basic 1.9.10__tar.gz → 1.9.11__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {tequila_basic-1.9.10/src/tequila_basic.egg-info → tequila_basic-1.9.11}/PKG-INFO +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/__init__.py +1 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/__init__.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/_gates_impl.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/circuit.py +3 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/gates.py +5 -6
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/hamiltonian/paulis.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/hamiltonian/qubit_hamiltonian.py +4 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/objective/braket.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/optimizer_gd.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/encodings.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/orbital_optimizer.py +12 -2
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/pyscf_interface.py +117 -13
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/qc_base.py +33 -7
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_api.py +66 -11
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_base.py +81 -3
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_pyquil.py +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qiskit.py +86 -6
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/version.py +1 -1
- tequila_basic-1.9.11/src/tequila/wavefunction/density_matrix.py +229 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/wavefunction/qubit_wavefunction.py +38 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11/src/tequila_basic.egg-info}/PKG-INFO +1 -1
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila_basic.egg-info/SOURCES.txt +1 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_chemistry.py +101 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_simulator_backends.py +66 -7
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/LICENSE +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/MANIFEST.in +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/README.md +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/requirements.txt +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/setup.cfg +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/setup.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/_unary_state_prep_impl.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/adapt/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/adapt/adapt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/krylov/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/krylov/krylov.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/robustness/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/robustness/helpers.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/robustness/interval.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/apps/unary_state_prep.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/autograd_imports.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/compiler.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/gradient.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/noise.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/postselection.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/pyzx.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/qasm.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/circuit/qpic.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/binary_rep.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/binary_utils.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/compile_groups.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/ev_utils.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/fermionic_functions.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/fermionic_methods.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/grouping/overlapping_methods.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/hamiltonian/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/hamiltonian/paulistring.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/ml/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/ml/interface_torch.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/ml/ml_api.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/ml/utils_ml.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/objective/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/objective/objective.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/objective/qtensor.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/_containers.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/optimizer_base.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/optimizer_gpyopt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/optimizers/optimizer_scipy.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/chemistry_tools.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/madness_interface.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/psi4_interface.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_aqt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_cirq.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_cudaq.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_ddsim.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_mqp.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qibo.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qiskit_gpu.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qlm.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qulacs.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_qulacs_gpu.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_spex.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/simulator_symbolic.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/simulators/test_spex_simulator.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/tools/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/tools/convenience.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/tools/qng.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/tools/random_generators.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/bitstrings.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/exceptions.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/joined_transformation.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/keymap.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/utils/misc.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/wavefunction/__init__.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila_basic.egg-info/dependency_links.txt +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila_basic.egg-info/requires.txt +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila_basic.egg-info/top_level.txt +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_TrotErr.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_adapt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_array.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_binary_pauli.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_binary_utils.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_bitstrings.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_braket.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_chemistry_f12.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_chemistry_madness.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_circuit_unitary.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_circuits.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_fermionic_meas.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_gates.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_gd_optimizer.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_gpyopt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_gradient.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_hamiltonian_arithmetic.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_krylov.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_mappings.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_noise.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_noise_opt.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_objectives.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_postselection.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_pyzx.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_qasm.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_qtensor.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_recompilation_routines.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_scipy.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_symbolic_simulator.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_torch_interface.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_unary_state_prep.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_variable.py +0 -0
- {tequila_basic-1.9.10 → tequila_basic-1.9.11}/tests/test_zzz_cleanup.py +0 -0
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with matries Hij = <i|H|j>, Sij = <i|j> and states |i> = U[i]|00...0> generated by the circuits given
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Parameters
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----------
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-------
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List of Tuples: [(weight, shifted_gate), (weight, shifted_gate)]
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<H>_U with U = AU(a)B -->
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<H>_U with U = AU(a)B --> \\sum weight <H>_V , with V=A shifted_gate
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or https://arxiv.org/abs/2011.05938 Eq.57
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for arg in comp.args:
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if hasattr(arg, "U"):
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if arg.U.device is not None:
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if hasattr(arg.U, "device") and arg.U.device is not None:
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# don't retrieve computer 100 times; pyquil errors out if this happens!
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self.device = arg.U.device
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break
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@@ -213,7 +213,7 @@ class JordanWigner(EncodingBase):
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213
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return openfermion.jordan_wigner(fermion_operator, *args, **kwargs)
|
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214
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215
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def map_state(self, state: list, *args, **kwargs):
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-
state = state + [0] * (self.n_orbitals - len(state))
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+
state = state + [0] * (2 * self.n_orbitals - len(state))
|
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result = [0] * len(state)
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if self.up_then_down:
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return [state[2 * i] for i in range(self.n_orbitals)] + [state[2 * i + 1] for i in range(self.n_orbitals)]
|
{tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/orbital_optimizer.py
RENAMED
|
@@ -50,6 +50,8 @@ def optimize_orbitals(
|
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50
50
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molecule_factory=None,
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51
51
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molecule_arguments=None,
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52
|
restrict_to_active_space=True,
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+
read_chkfile: str = None,
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+
save_chkfile: str = None,
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53
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*args,
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54
56
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**kwargs,
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55
57
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):
|
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@@ -76,6 +78,8 @@ def optimize_orbitals(
|
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76
78
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This initialized a random guess using numpy.random.normal(loc=X, scale=Y) with X=0.0 and Y=0.1 as defaults
|
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79
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return_mcscf: return the PySCF MCSCF structure after optimization
|
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78
80
|
molecule_arguments: arguments to pass to molecule_factory or default molecule constructor | only change if you know what you are doing
|
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81
|
+
read_chkfile: checkpoint file to read the initial orbitals during the CASSCF optimization. For more info see https://pyscf.org/_modules/pyscf/mcscf/chkfile.html#load_mcscf
|
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82
|
+
save_chkfile: checkpoint file to save the intermediate orbitals during the CASSCF optimization.
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83
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args: just here for convenience
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kwargs: just here for conveniece
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85
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@@ -85,7 +89,7 @@ def optimize_orbitals(
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85
89
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"""
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86
90
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87
91
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try:
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-
from pyscf import mcscf
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+
from pyscf import mcscf, lib
|
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from . import QuantumChemistryPySCF
|
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except Exception as exception:
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91
95
|
raise Exception("{}\noptimize_orbitals: Need pyscf to run (pip install pyscf)".format(str(exception)))
|
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@@ -103,6 +107,8 @@ def optimize_orbitals(
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103
107
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result = OptimizeOrbitalsResult()
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104
108
|
mc = mcscf.CASSCF(mf, pyscf_molecule.n_orbitals, pyscf_molecule.n_electrons)
|
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105
109
|
mc.callback = result
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110
|
+
if save_chkfile is not None:
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+
mc.chkfile = save_chkfile
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106
112
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c = pyscf_molecule.compute_constant_part()
|
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113
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108
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if circuit is None and vqe_solver is None:
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@@ -170,10 +176,14 @@ def optimize_orbitals(
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assert initial_guess.shape[1] == no
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initial_guess = mcscf.project_init_guess(mc, initial_guess)
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mc.kernel(mo_coeff=initial_guess)
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+
elif read_chkfile is not None:
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+
chk = lib.chkfile.load(read_chkfile, "mcscf")
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+
mo_coeff = chk["mo_coeff"]
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+
ci0 = chk["ci"] if "ci" in chk.keys() else None
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+
mc.kernel(mo_coeff=mo_coeff, ci0=ci0)
|
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184
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else:
|
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mc.kernel()
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# make new molecule
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-
|
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mo_coeff = mc.mo_coeff
|
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transformed_molecule = pyscf_molecule.transform_orbitals(orbital_coefficients=mo_coeff, name="optimized")
|
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result.molecule = transformed_molecule
|
{tequila_basic-1.9.10 → tequila_basic-1.9.11}/src/tequila/quantumchemistry/pyscf_interface.py
RENAMED
|
@@ -1,12 +1,15 @@
|
|
|
1
1
|
from tequila import TequilaException, QubitWaveFunction
|
|
2
2
|
from tequila.quantumchemistry.qc_base import QuantumChemistryBase
|
|
3
|
+
from tequila.quantumchemistry.encodings import JordanWigner
|
|
3
4
|
from tequila.quantumchemistry import ParametersQC, NBodyTensor
|
|
4
5
|
import pyscf
|
|
6
|
+
from pyscf import fci
|
|
5
7
|
|
|
6
8
|
from .chemistry_tools import OrbitalData
|
|
7
9
|
|
|
8
10
|
import numpy
|
|
9
11
|
import typing
|
|
12
|
+
import warnings
|
|
10
13
|
|
|
11
14
|
|
|
12
15
|
def _merge_alpha_beta_strs(alpha_str, beta_str, norb):
|
|
@@ -112,27 +115,128 @@ class QuantumChemistryPySCF(QuantumChemistryBase):
|
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112
115
|
|
|
113
116
|
super().__init__(parameters=parameters, transformation=transformation, orbitals=orbitals, *args, **kwargs)
|
|
114
117
|
|
|
115
|
-
def compute_fci(self, get_wfn=False, **kwargs):
|
|
116
|
-
from pyscf import fci
|
|
117
|
-
|
|
118
|
+
def compute_fci(self, get_wfn=False, ci0=None, use_hcb=False, **kwargs):
|
|
118
119
|
c, h1, h2 = self.get_integrals(ordering="chem")
|
|
119
120
|
norb = self.n_orbitals
|
|
120
121
|
nelec = self.n_electrons
|
|
121
|
-
|
|
122
|
+
|
|
123
|
+
if ci0 is not None:
|
|
124
|
+
ci0 = self.create_ci_vector(ci0, use_hcb=use_hcb)
|
|
125
|
+
|
|
126
|
+
e, fcivecs = fci.direct_spin1.kernel(
|
|
127
|
+
h1, h2.elems, norb, nelec, max_cycle=2000, max_space=100, ci0=ci0, **kwargs
|
|
128
|
+
)
|
|
122
129
|
|
|
123
130
|
if get_wfn:
|
|
124
|
-
|
|
125
|
-
|
|
126
|
-
|
|
127
|
-
|
|
128
|
-
for
|
|
129
|
-
|
|
130
|
-
|
|
131
|
-
|
|
132
|
-
|
|
131
|
+
if not ("nroots" in kwargs and kwargs["nroots"] > 1):
|
|
132
|
+
fcivecs = [fcivecs]
|
|
133
|
+
e = [e]
|
|
134
|
+
wfns = []
|
|
135
|
+
energies = [x + c for x in e]
|
|
136
|
+
for fcivec in fcivecs:
|
|
137
|
+
if use_hcb:
|
|
138
|
+
alpha_strs = fci.cistring.make_strings(range(norb), nelec // 2)
|
|
139
|
+
wfn_dim = 2**norb
|
|
140
|
+
wfn = numpy.zeros(wfn_dim)
|
|
141
|
+
for i, alpha_str in enumerate(alpha_strs):
|
|
142
|
+
alpha_str_b = bin(alpha_str)[2:].zfill(norb)[::-1]
|
|
143
|
+
merged_str = int(alpha_str_b, 2)
|
|
144
|
+
wfn[merged_str] = fcivec[i, i]
|
|
145
|
+
else:
|
|
146
|
+
alpha_strs = fci.cistring.make_strings(range(norb), nelec // 2)
|
|
147
|
+
beta_strs = alpha_strs.copy()
|
|
148
|
+
wfn_dim = 2 ** (2 * norb)
|
|
149
|
+
wfn = numpy.zeros(wfn_dim)
|
|
150
|
+
for i, alpha_str in enumerate(alpha_strs):
|
|
151
|
+
for j, beta_str in enumerate(beta_strs):
|
|
152
|
+
if not self.transformation.up_then_down:
|
|
153
|
+
merged_str, phase = _merge_alpha_beta_strs(alpha_str, beta_str, norb)
|
|
154
|
+
wfn[merged_str] = phase * fcivec[i, j]
|
|
155
|
+
else:
|
|
156
|
+
alpha_str_b = bin(alpha_str)[2:].zfill(norb)
|
|
157
|
+
beta_str_b = bin(beta_str)[2:].zfill(norb)
|
|
158
|
+
merged_str_b = (alpha_str_b + beta_str_b)[::-1]
|
|
159
|
+
merged_str = int(merged_str_b, 2)
|
|
160
|
+
wfn[merged_str] = fcivec[i, j]
|
|
161
|
+
wfns.append(QubitWaveFunction.from_array(wfn))
|
|
162
|
+
if not ("nroots" in kwargs and kwargs["nroots"] > 1):
|
|
163
|
+
return energies[0], wfns[0]
|
|
164
|
+
return energies, wfns
|
|
133
165
|
|
|
134
166
|
return e + c
|
|
135
167
|
|
|
168
|
+
def create_ci_vector(self, wfn, use_hcb=False):
|
|
169
|
+
"""
|
|
170
|
+
Reduces a full Fock space CI vector to the (na, nb) vector
|
|
171
|
+
required by fci.direct_spin1.
|
|
172
|
+
|
|
173
|
+
Args:
|
|
174
|
+
wfn (np.ndarray): 1D vector of length 2**(2*norb).
|
|
175
|
+
|
|
176
|
+
Returns:
|
|
177
|
+
ci_vector (np.ndarray): 2D vector of shape (na, nb).
|
|
178
|
+
"""
|
|
179
|
+
if not isinstance(wfn, numpy.ndarray):
|
|
180
|
+
if hasattr(wfn, "to_array"):
|
|
181
|
+
wfn = wfn.to_array()
|
|
182
|
+
else:
|
|
183
|
+
raise TequilaException(
|
|
184
|
+
f"create_ci_vector received wfn object of type {type(wfn)} but needs numpy.ndarray or tq.QubitWaveFunction\nwfn={wfn}"
|
|
185
|
+
)
|
|
186
|
+
|
|
187
|
+
wfn = numpy.real_if_close(wfn).astype(numpy.float64)
|
|
188
|
+
|
|
189
|
+
if type(self.transformation).__name__ != "JordanWigner":
|
|
190
|
+
warnings.warn("!!!guess wavefunctions for pyscf need to be in JordanWigner encoding!!!")
|
|
191
|
+
|
|
192
|
+
norb = self.n_orbitals
|
|
193
|
+
nelec = self.n_electrons
|
|
194
|
+
neleca = (nelec + 1) // 2
|
|
195
|
+
nelecb = nelec // 2
|
|
196
|
+
|
|
197
|
+
expected_len = 2 ** (2 * norb) if not use_hcb else 2**norb
|
|
198
|
+
if wfn.size != expected_len:
|
|
199
|
+
raise ValueError(
|
|
200
|
+
f"Input vector has length {wfn.size}, "
|
|
201
|
+
f"but expected full Fock space length {expected_len} (for {norb} orbitals)."
|
|
202
|
+
)
|
|
203
|
+
|
|
204
|
+
na = fci.cistring.num_strings(norb, neleca)
|
|
205
|
+
nb = fci.cistring.num_strings(norb, nelecb)
|
|
206
|
+
ci_vector = numpy.zeros((na, nb), dtype=wfn.dtype)
|
|
207
|
+
|
|
208
|
+
for i in range(expected_len):
|
|
209
|
+
if use_hcb:
|
|
210
|
+
alpha_str = bin(i)[2:].zfill(norb)
|
|
211
|
+
beta_str = alpha_str
|
|
212
|
+
else:
|
|
213
|
+
state_binary_str = bin(i)[2:].zfill(2 * norb)
|
|
214
|
+
if not self.transformation.up_then_down:
|
|
215
|
+
alpha_str = state_binary_str[0::2]
|
|
216
|
+
beta_str = state_binary_str[1::2]
|
|
217
|
+
else:
|
|
218
|
+
alpha_str = state_binary_str[0 : len(state_binary_str) // 2]
|
|
219
|
+
beta_str = state_binary_str[len(state_binary_str) // 2 : len(state_binary_str)]
|
|
220
|
+
|
|
221
|
+
# Only keep states that are particle-number conserving
|
|
222
|
+
if alpha_str.count("1") == neleca and beta_str.count("1") == nelecb:
|
|
223
|
+
alpha_int = int(alpha_str, 2)
|
|
224
|
+
beta_int = int(beta_str, 2)
|
|
225
|
+
|
|
226
|
+
# Compute the phase as in _merge_alpha_beta_strs(alpha_str, beta_str, norb)
|
|
227
|
+
set_bits_beta = [i for i in range(norb) if (beta_int >> i) & 1]
|
|
228
|
+
try:
|
|
229
|
+
phase = (-1) ** sum([(alpha_int & 2**i - 1).bit_count() for i in set_bits_beta])
|
|
230
|
+
except AttributeError as error:
|
|
231
|
+
phase = (-1) ** sum([bin(alpha_int & 2**i - 1).count("1") for i in set_bits_beta])
|
|
232
|
+
|
|
233
|
+
coeff = wfn[i]
|
|
234
|
+
row_idx = fci.cistring.str2addr(norb, neleca, alpha_int)
|
|
235
|
+
col_idx = fci.cistring.str2addr(norb, nelecb, beta_int)
|
|
236
|
+
ci_vector[row_idx, col_idx] = phase * coeff
|
|
237
|
+
|
|
238
|
+
return ci_vector
|
|
239
|
+
|
|
136
240
|
def compute_energy(self, method: str, *args, **kwargs) -> float:
|
|
137
241
|
method = method.lower()
|
|
138
242
|
|
|
@@ -140,6 +140,7 @@ class QuantumChemistryBase:
|
|
|
140
140
|
if transformation is None:
|
|
141
141
|
transformation = molecule.transformation
|
|
142
142
|
parameters = molecule.parameters
|
|
143
|
+
parameters.frozen_core = False
|
|
143
144
|
return cls(
|
|
144
145
|
nuclear_repulsion=c,
|
|
145
146
|
one_body_integrals=h1,
|
|
@@ -238,7 +239,7 @@ class QuantumChemistryBase:
|
|
|
238
239
|
Notes
|
|
239
240
|
----------
|
|
240
241
|
Creates the transformed hermitian generator of UCC type unitaries:
|
|
241
|
-
M(a
|
|
242
|
+
M(a^\\dagger_{a_0} a_{i_0} a^\\dagger{a_1}a_{i_1} ... - h.c.)
|
|
242
243
|
where the qubit map M depends is self.transformation
|
|
243
244
|
|
|
244
245
|
Parameters
|
|
@@ -818,6 +819,7 @@ class QuantumChemistryBase:
|
|
|
818
819
|
frozen_orbitals=core,
|
|
819
820
|
orbital_coefficients=coeff,
|
|
820
821
|
overlap_integrals=s,
|
|
822
|
+
orbital_type="orthonormalized-{}-basis".format(self.integral_manager._basis_name),
|
|
821
823
|
)
|
|
822
824
|
return self
|
|
823
825
|
else:
|
|
@@ -830,6 +832,7 @@ class QuantumChemistryBase:
|
|
|
830
832
|
frozen_orbitals=core,
|
|
831
833
|
orbital_coefficients=coeff,
|
|
832
834
|
overlap_integrals=s,
|
|
835
|
+
orbital_type="orthonormalized-{}-basis".format(self.integral_manager._basis_name),
|
|
833
836
|
)
|
|
834
837
|
parameters = copy.deepcopy(self.parameters)
|
|
835
838
|
result = QuantumChemistryBase(
|
|
@@ -914,7 +917,7 @@ class QuantumChemistryBase:
|
|
|
914
917
|
Compute annihilation operator on spin-orbital in qubit representation
|
|
915
918
|
Spin-orbital order is always (up,down,up,down,...)
|
|
916
919
|
"""
|
|
917
|
-
assert orbital
|
|
920
|
+
assert orbital < self.n_orbitals * 2
|
|
918
921
|
aop = openfermion.ops.FermionOperator(f"{orbital}", coefficient)
|
|
919
922
|
return self.transformation(aop)
|
|
920
923
|
|
|
@@ -923,7 +926,7 @@ class QuantumChemistryBase:
|
|
|
923
926
|
Compute creation operator on spin-orbital in qubit representation
|
|
924
927
|
Spin-orbital order is always (up,down,up,down,...)
|
|
925
928
|
"""
|
|
926
|
-
assert orbital
|
|
929
|
+
assert orbital < self.n_orbitals * 2
|
|
927
930
|
cop = openfermion.ops.FermionOperator(f"{orbital}^", coefficient)
|
|
928
931
|
return self.transformation(cop)
|
|
929
932
|
|
|
@@ -2190,7 +2193,7 @@ class QuantumChemistryBase:
|
|
|
2190
2193
|
raise TequilaException("Need to specify a Quantum Circuit.")
|
|
2191
2194
|
|
|
2192
2195
|
def _get_hcb_op(op_tuple):
|
|
2193
|
-
"""Build the hardcore boson operators: b
|
|
2196
|
+
"""Build the hardcore boson operators: b^\\dagger_ib_j + h.c. in qubit encoding"""
|
|
2194
2197
|
if len(op_tuple) == 2:
|
|
2195
2198
|
return 2 * Sm(op_tuple[0][0]) * Sp(op_tuple[1][0])
|
|
2196
2199
|
elif len(op_tuple) == 4:
|
|
@@ -2623,7 +2626,14 @@ class QuantumChemistryBase:
|
|
|
2623
2626
|
circuit += gates.GeneralizedRotation(generator=n_down, angle=-2 * phi)
|
|
2624
2627
|
return circuit
|
|
2625
2628
|
|
|
2626
|
-
def get_givens_circuit(
|
|
2629
|
+
def get_givens_circuit(
|
|
2630
|
+
self,
|
|
2631
|
+
unitary,
|
|
2632
|
+
tol=1e-12,
|
|
2633
|
+
ordering=OPTIMIZED_ORDERING,
|
|
2634
|
+
fix: bool = True,
|
|
2635
|
+
label=None,
|
|
2636
|
+
) -> QCircuit:
|
|
2627
2637
|
"""
|
|
2628
2638
|
Constructs a quantum circuit from a given real unitary matrix using Givens rotations.
|
|
2629
2639
|
|
|
@@ -2634,6 +2644,8 @@ class QuantumChemistryBase:
|
|
|
2634
2644
|
- unitary (numpy.array): A real unitary matrix representing the transformation to implement.
|
|
2635
2645
|
- tol (float): A tolerance threshold below which matrix elements are considered zero.
|
|
2636
2646
|
- ordering (list of tuples or 'Optimized'): Custom ordering of indices for Givens rotations or 'Optimized' to generate them automatically.
|
|
2647
|
+
- fix (bool): whether to set the angle as fixed or as inial value as: angle=tq.Variable(idx) + value. Useful to let further relaxation to the basis change
|
|
2648
|
+
- label: can be passed instead of angle to have auto-naming with label ("R",i,j,label) useful for repreating gates with individual variables
|
|
2637
2649
|
|
|
2638
2650
|
Returns:
|
|
2639
2651
|
- QCircuit: A quantum circuit implementing the series of rotations decomposed from the unitary.
|
|
@@ -2646,11 +2658,25 @@ class QuantumChemistryBase:
|
|
|
2646
2658
|
|
|
2647
2659
|
# Add all Rz (phase) rotations to the circuit.
|
|
2648
2660
|
for phi in phi_list:
|
|
2649
|
-
|
|
2661
|
+
if fix:
|
|
2662
|
+
circuit += self.n_rotation(i=phi[1], phi=phi[0])
|
|
2663
|
+
else:
|
|
2664
|
+
circuit += self.n_rotation(
|
|
2665
|
+
i=phi[1],
|
|
2666
|
+
phi=phi[0] + Variable(f"Ph({phi[1]}" + ("," + str(label)) * (label is not None) + ")"),
|
|
2667
|
+
)
|
|
2650
2668
|
|
|
2651
2669
|
# Add all Givens rotations to the circuit.
|
|
2652
2670
|
for theta in reversed(theta_list):
|
|
2653
|
-
|
|
2671
|
+
if fix:
|
|
2672
|
+
circuit += self.UR(i=theta[1], j=theta[2], angle=theta[0] * 2)
|
|
2673
|
+
else:
|
|
2674
|
+
circuit += self.UR(
|
|
2675
|
+
i=theta[1],
|
|
2676
|
+
j=theta[2],
|
|
2677
|
+
angle=(theta[0] * 2)
|
|
2678
|
+
+ Variable(f"UR({theta[1]},{theta[2]}" + ("," + str(label)) * (label is not None) + ")"),
|
|
2679
|
+
)
|
|
2654
2680
|
|
|
2655
2681
|
return circuit
|
|
2656
2682
|
|
|
@@ -2,16 +2,16 @@ from collections import namedtuple
|
|
|
2
2
|
import typing
|
|
3
3
|
import warnings
|
|
4
4
|
import numpy
|
|
5
|
+
from importlib.metadata import version, PackageNotFoundError
|
|
5
6
|
from numbers import Real as RealNumber
|
|
6
7
|
from typing import Dict, Union, Hashable
|
|
7
|
-
import pkg_resources
|
|
8
|
-
from pkg_resources import DistributionNotFound
|
|
9
8
|
from tequila.objective import Objective, Variable, assign_variable, format_variable_dictionary, QTensor
|
|
10
9
|
from tequila.utils.exceptions import TequilaException, TequilaWarning
|
|
11
10
|
from tequila.simulators.simulator_base import BackendCircuit, BackendExpectationValue
|
|
12
11
|
from tequila.circuit.noise import NoiseModel
|
|
13
12
|
from tequila.wavefunction.qubit_wavefunction import QubitWaveFunction
|
|
14
13
|
from tequila.simulators.simulator_symbolic import BackendCircuitSymbolic, BackendExpectationValueSymbolic
|
|
14
|
+
from tequila.wavefunction.density_matrix import DensityMatrix
|
|
15
15
|
|
|
16
16
|
SUPPORTED_BACKENDS = [
|
|
17
17
|
"qulacs",
|
|
@@ -30,6 +30,7 @@ SUPPORTED_BACKENDS = [
|
|
|
30
30
|
"cudaq",
|
|
31
31
|
]
|
|
32
32
|
|
|
33
|
+
SUPPORTED_DENSITY_BACKENDS = ["qiskit"]
|
|
33
34
|
# TODO: Reenable noise for Qiskit
|
|
34
35
|
SUPPORTED_NOISE_BACKENDS = ["cirq", "pyquil"] # qulacs removed in v.1.9
|
|
35
36
|
|
|
@@ -102,7 +103,7 @@ except ImportError:
|
|
|
102
103
|
HAS_QISKIT_NOISE = False
|
|
103
104
|
|
|
104
105
|
try:
|
|
105
|
-
|
|
106
|
+
version("qiskit-aer-gpu")
|
|
106
107
|
from tequila.simulators.simulator_qiskit_gpu import BackendCircuitQiskitGpu, BackendExpectationValueQiskitGpu
|
|
107
108
|
|
|
108
109
|
HAS_QISKIT_GPU = True
|
|
@@ -112,7 +113,7 @@ try:
|
|
|
112
113
|
|
|
113
114
|
if HAS_QISKIT_GPU_NOISE:
|
|
114
115
|
INSTALLED_NOISE_SAMPLERS["qiskit_gpu"] = BackendTypes(BackendCircuitQiskitGpu, BackendExpectationValueQiskitGpu)
|
|
115
|
-
except (ImportError,
|
|
116
|
+
except (ImportError, PackageNotFoundError):
|
|
116
117
|
HAS_QISKIT_GPU = False
|
|
117
118
|
HAS_QISKIT_GPU_NOISE = False
|
|
118
119
|
|
|
@@ -142,7 +143,6 @@ except ImportError:
|
|
|
142
143
|
HAS_CIRQ = False
|
|
143
144
|
|
|
144
145
|
try:
|
|
145
|
-
pkg_resources.require("qulacs")
|
|
146
146
|
import qulacs
|
|
147
147
|
from tequila.simulators.simulator_qulacs import BackendCircuitQulacs, BackendExpectationValueQulacs
|
|
148
148
|
|
|
@@ -156,11 +156,10 @@ try:
|
|
|
156
156
|
INSTALLED_NOISE_SAMPLERS["qulacs"] = BackendTypes(
|
|
157
157
|
CircType=BackendCircuitQulacs, ExpValueType=BackendExpectationValueQulacs
|
|
158
158
|
)
|
|
159
|
-
except
|
|
159
|
+
except ImportError:
|
|
160
160
|
HAS_QULACS = False
|
|
161
161
|
|
|
162
162
|
try:
|
|
163
|
-
# pkg_resources.require("qulacs-gpu")
|
|
164
163
|
from qulacs import QuantumStateGpu
|
|
165
164
|
from tequila.simulators.simulator_qulacs_gpu import BackendCircuitQulacsGpu, BackendExpectationValueQulacsGpu
|
|
166
165
|
|
|
@@ -174,7 +173,7 @@ try:
|
|
|
174
173
|
INSTALLED_NOISE_SAMPLERS["qulacs_gpu"] = BackendTypes(
|
|
175
174
|
CircType=BackendCircuitQulacsGpu, ExpValueType=BackendExpectationValueQulacsGpu
|
|
176
175
|
)
|
|
177
|
-
except
|
|
176
|
+
except ImportError:
|
|
178
177
|
HAS_QULACS_GPU = False
|
|
179
178
|
|
|
180
179
|
|
|
@@ -234,7 +233,12 @@ def show_available_simulators():
|
|
|
234
233
|
|
|
235
234
|
|
|
236
235
|
def pick_backend(
|
|
237
|
-
backend: str = None,
|
|
236
|
+
backend: str = None,
|
|
237
|
+
samples: int = None,
|
|
238
|
+
simulate_density: bool = False,
|
|
239
|
+
noise: NoiseModel = None,
|
|
240
|
+
device=None,
|
|
241
|
+
exclude_symbolic: bool = True,
|
|
238
242
|
) -> str:
|
|
239
243
|
"""
|
|
240
244
|
choose, or verify, a backend for the user.
|
|
@@ -265,6 +269,12 @@ def pick_backend(
|
|
|
265
269
|
raise TequilaException("device use requires backend specification!")
|
|
266
270
|
|
|
267
271
|
if backend is None:
|
|
272
|
+
if simulate_density:
|
|
273
|
+
for f in SUPPORTED_DENSITY_BACKENDS:
|
|
274
|
+
if f in INSTALLED_SIMULATORS:
|
|
275
|
+
return f
|
|
276
|
+
raise TequilaException("Density simulators unavailable!")
|
|
277
|
+
|
|
268
278
|
if noise is None:
|
|
269
279
|
if samples is None:
|
|
270
280
|
for f in SUPPORTED_BACKENDS:
|
|
@@ -320,6 +330,7 @@ def compile_objective(
|
|
|
320
330
|
variables: typing.Dict["Variable", "RealNumber"] = None,
|
|
321
331
|
backend: str = None,
|
|
322
332
|
samples: int = None,
|
|
333
|
+
simulate_density: bool = False,
|
|
323
334
|
device: str = None,
|
|
324
335
|
noise: NoiseModel = None,
|
|
325
336
|
*args,
|
|
@@ -350,7 +361,9 @@ def compile_objective(
|
|
|
350
361
|
the compiled objective.
|
|
351
362
|
"""
|
|
352
363
|
|
|
353
|
-
backend = pick_backend(
|
|
364
|
+
backend = pick_backend(
|
|
365
|
+
backend=backend, samples=samples, simulate_density=simulate_density, noise=noise, device=device
|
|
366
|
+
)
|
|
354
367
|
|
|
355
368
|
# dummy variables
|
|
356
369
|
if variables is None:
|
|
@@ -405,6 +418,7 @@ def compile_circuit(
|
|
|
405
418
|
variables: typing.Dict["Variable", "RealNumber"] = None,
|
|
406
419
|
backend: str = None,
|
|
407
420
|
samples: int = None,
|
|
421
|
+
simulate_density: bool = False,
|
|
408
422
|
noise: NoiseModel = None,
|
|
409
423
|
device: str = None,
|
|
410
424
|
*args,
|
|
@@ -516,6 +530,7 @@ def simulate(
|
|
|
516
530
|
compiled_objective = compile(
|
|
517
531
|
objective=objective,
|
|
518
532
|
samples=samples,
|
|
533
|
+
simulate_density=False,
|
|
519
534
|
variables=variables,
|
|
520
535
|
backend=backend,
|
|
521
536
|
noise=noise,
|
|
@@ -527,6 +542,43 @@ def simulate(
|
|
|
527
542
|
return compiled_objective(variables=variables, samples=samples, initial_state=initial_state, *args, **kwargs)
|
|
528
543
|
|
|
529
544
|
|
|
545
|
+
def simulate_density(
|
|
546
|
+
objective: typing.Union["Objective", "QCircuit", "QTensor"],
|
|
547
|
+
variables: Dict[Union[Variable, Hashable], RealNumber] = None,
|
|
548
|
+
backend: str = None,
|
|
549
|
+
noise: NoiseModel = None,
|
|
550
|
+
device: str = None,
|
|
551
|
+
*args,
|
|
552
|
+
**kwargs,
|
|
553
|
+
) -> Union[RealNumber, DensityMatrix]:
|
|
554
|
+
variables = format_variable_dictionary(variables)
|
|
555
|
+
|
|
556
|
+
if variables is None and not (len(objective.extract_variables()) == 0):
|
|
557
|
+
raise TequilaException(
|
|
558
|
+
"You called simulate for a parametrized type but forgot to pass down the variables: {}".format(
|
|
559
|
+
objective.extract_variables()
|
|
560
|
+
)
|
|
561
|
+
)
|
|
562
|
+
|
|
563
|
+
if backend is None:
|
|
564
|
+
backend = "qiskit" # currently only permissible backend!
|
|
565
|
+
elif backend.lower() != "qiskit":
|
|
566
|
+
TequilaException("Density matrix simulation currently works with only qiskit backend!")
|
|
567
|
+
|
|
568
|
+
compiled_objective = compile(
|
|
569
|
+
objective=objective,
|
|
570
|
+
samples=None,
|
|
571
|
+
simulate_density=True,
|
|
572
|
+
variables=variables,
|
|
573
|
+
backend=backend,
|
|
574
|
+
noise=noise,
|
|
575
|
+
device=device,
|
|
576
|
+
*args,
|
|
577
|
+
**kwargs,
|
|
578
|
+
)
|
|
579
|
+
return compiled_objective(variables=variables, samples=None, simulate_density=True, *args, **kwargs)
|
|
580
|
+
|
|
581
|
+
|
|
530
582
|
def draw(objective, variables=None, backend: str = None, name=None, *args, **kwargs):
|
|
531
583
|
"""
|
|
532
584
|
Pretty output (depends on installed backends) for jupyter notebooks
|
|
@@ -625,6 +677,7 @@ def compile(
|
|
|
625
677
|
objective: typing.Union["Objective", "QCircuit", "QTensor"],
|
|
626
678
|
variables: Dict[Union["Variable", Hashable], RealNumber] = None,
|
|
627
679
|
samples: int = None,
|
|
680
|
+
simulate_density: bool = False,
|
|
628
681
|
backend: str = None,
|
|
629
682
|
noise: NoiseModel = None,
|
|
630
683
|
device: str = None,
|
|
@@ -655,7 +708,9 @@ def compile(
|
|
|
655
708
|
|
|
656
709
|
"""
|
|
657
710
|
|
|
658
|
-
backend = pick_backend(
|
|
711
|
+
backend = pick_backend(
|
|
712
|
+
backend=backend, noise=noise, samples=samples, simulate_density=simulate_density, device=device
|
|
713
|
+
)
|
|
659
714
|
|
|
660
715
|
if variables is not None:
|
|
661
716
|
# allow hashable types as keys without casting it to variables
|