temdb 3.0.0__tar.gz

temdb-3.0.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/

temdb-3.0.0/LICENSE

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+Copyright 2026 Allen Institute
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

temdb-3.0.0/PKG-INFO

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+Metadata-Version: 2.5
+Name: temdb
+Version: 3.0.0
+Summary: TEMdb - Metadata database server
+License-Expression: BSD-3-Clause
+License-File: LICENSE
+Requires-Python: >=3.10
+Requires-Dist: alembic>=1.18
+Requires-Dist: asyncpg>=0.31
+Requires-Dist: fastapi>=0.136
+Requires-Dist: pydantic-settings>=2.14
+Requires-Dist: pydantic>=2.13
+Requires-Dist: sqlalchemy[asyncio]>=2.1.0b2
+Requires-Dist: temdb-models==3.0.0
+Requires-Dist: uuid-utils>=0.16
+Requires-Dist: uvicorn>=0.49

temdb-3.0.0/alembic.ini

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+[alembic]
+script_location = %(here)s/migrations
+file_template = %%(year)d%%(month).2d%%(day).2d_%%(rev)s_%%(slug)s
+prepend_sys_path = src
+
+[loggers]
+keys = root,sqlalchemy,alembic
+[handlers]
+keys = console
+[formatters]
+keys = generic
+[logger_root]
+level = WARNING
+handlers = console
+[logger_sqlalchemy]
+level = WARNING
+handlers =
+qualname = sqlalchemy.engine
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s

temdb-3.0.0/migrations/env.py

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+import asyncio
+import os
+
+import sqlalchemy as sa
+from alembic import context
+from sqlalchemy.ext.asyncio import async_engine_from_config
+
+from temdb.server.config import get_config
+from temdb.server.sqlmodels import Base
+
+target_metadata = Base.metadata
+
+MIGRATION_LOCK_KEY = 7_323_488_513_002_001
+
+
+def include_object(obj, name, type_, reflected, compare_to):
+    if type_ == "table" and name.startswith("tile_d_"):
+        return False
+    return True
+
+
+def _database_url() -> str:
+    url = os.environ.get("TEMDB_MIGRATION_URL") or get_config().database_url
+    if not url:
+        raise RuntimeError("No database_url configured (set TEMDB_MIGRATION_URL or dev.env)")
+    return url
+
+
+def _configure(connection):
+    connection.execute(sa.text(f"SELECT pg_advisory_lock({MIGRATION_LOCK_KEY})"))
+    context.configure(
+        connection=connection,
+        target_metadata=target_metadata,
+        include_object=include_object,
+        compare_type=True,
+        compare_server_default=True,
+    )
+    with context.begin_transaction():
+        context.run_migrations()
+    connection.commit()
+
+
+def run_migrations_offline():
+    context.configure(
+        url=_database_url(),
+        target_metadata=target_metadata,
+        literal_binds=True,
+        include_object=include_object,
+    )
+    with context.begin_transaction():
+        context.run_migrations()
+
+
+async def run_async_migrations():
+    cfg = context.config.get_section(context.config.config_ini_section, {})
+    cfg["sqlalchemy.url"] = _database_url()
+    engine = async_engine_from_config(cfg, prefix="sqlalchemy.")
+    async with engine.connect() as conn:
+        await conn.run_sync(_configure)
+    await engine.dispose()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    asyncio.run(run_async_migrations())

temdb-3.0.0/migrations/script.py.mako

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+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from collections.abc import Sequence
+
+import sqlalchemy as sa
+from alembic import op
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision: str = ${repr(up_revision)}
+down_revision: str | Sequence[str] | None = ${repr(down_revision)}
+branch_labels: str | Sequence[str] | None = ${repr(branch_labels)}
+depends_on: str | Sequence[str] | None = ${repr(depends_on)}
+
+
+def upgrade() -> None:
+    """Upgrade schema."""
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade() -> None:
+    """Downgrade schema."""
+    ${downgrades if downgrades else "pass"}