telometer 0.94__tar.gz → 0.95__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {telometer-0.94 → telometer-0.95}/PKG-INFO +1 -1
- {telometer-0.94 → telometer-0.95}/setup.py +1 -1
- {telometer-0.94 → telometer-0.95}/telometer/__init__.py +1 -1
- {telometer-0.94 → telometer-0.95}/telometer/telometer.py +1 -1
- {telometer-0.94 → telometer-0.95}/telometer.egg-info/PKG-INFO +1 -1
- {telometer-0.94 → telometer-0.95}/LICENSE.txt +0 -0
- {telometer-0.94 → telometer-0.95}/README.md +0 -0
- {telometer-0.94 → telometer-0.95}/setup.cfg +0 -0
- {telometer-0.94 → telometer-0.95}/telometer.egg-info/SOURCES.txt +0 -0
- {telometer-0.94 → telometer-0.95}/telometer.egg-info/dependency_links.txt +0 -0
- {telometer-0.94 → telometer-0.95}/telometer.egg-info/entry_points.txt +0 -0
- {telometer-0.94 → telometer-0.95}/telometer.egg-info/top_level.txt +0 -0
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Metadata-Version: 2.1
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Name: telometer
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Version: 0.
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Version: 0.95
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Summary: a simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data
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Author: Santiago E Sanchez
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Author-email: ses94@stanford.edu
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setuptools.setup(
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name="telometer",
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version="0.
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version="0.95",
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author="Santiago E Sanchez",
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author_email="ses94@stanford.edu",
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description="a simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data",
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@@ -193,7 +193,7 @@ def process_bam_file(bam_file_path, output_file_path, max_gap_length=100, min_re
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print(f"Telometer completed successfully. Total telomeres measured: {len(read_results)}")
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print(f"Total processing time: {time.time() - start_time:.2f} seconds")
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def run_telometer:
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def run_telometer():
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parser = argparse.ArgumentParser(description='Calculate telomere length from a BAM file.')
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parser.add_argument('-b', '--bam', help='The path to the sorted BAM file.', required=True)
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parser.add_argument('-o', '--output', help='The path to the output file.', required=True)
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Metadata-Version: 2.1
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Name: telometer
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Version: 0.
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Version: 0.95
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Summary: a simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data
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Author: Santiago E Sanchez
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Author-email: ses94@stanford.edu
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