tausurv 0.1.0__tar.gz

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Files changed (148) hide show
  1. tausurv-0.1.0/Cargo.lock +961 -0
  2. tausurv-0.1.0/Cargo.toml +38 -0
  3. tausurv-0.1.0/LICENSE +21 -0
  4. tausurv-0.1.0/PKG-INFO +119 -0
  5. tausurv-0.1.0/README.md +76 -0
  6. tausurv-0.1.0/crates/tausurv-core/Cargo.toml +28 -0
  7. tausurv-0.1.0/crates/tausurv-core/benches/log_rank_tree.rs +60 -0
  8. tausurv-0.1.0/crates/tausurv-core/src/data.rs +54 -0
  9. tausurv-0.1.0/crates/tausurv-core/src/forest.rs +481 -0
  10. tausurv-0.1.0/crates/tausurv-core/src/lib.rs +25 -0
  11. tausurv-0.1.0/crates/tausurv-core/src/nelson_aalen.rs +130 -0
  12. tausurv-0.1.0/crates/tausurv-core/src/splits.rs +543 -0
  13. tausurv-0.1.0/crates/tausurv-core/src/step.rs +168 -0
  14. tausurv-0.1.0/crates/tausurv-core/src/tree.rs +669 -0
  15. tausurv-0.1.0/crates/tausurv-pyo3/Cargo.toml +18 -0
  16. tausurv-0.1.0/crates/tausurv-pyo3/src/lib.rs +590 -0
  17. tausurv-0.1.0/pyproject.toml +84 -0
  18. tausurv-0.1.0/tausurv/__init__.py +36 -0
  19. tausurv-0.1.0/tausurv/_tausurv_core.pyi +90 -0
  20. tausurv-0.1.0/tausurv/copulas/__init__.py +24 -0
  21. tausurv-0.1.0/tausurv/copulas/base.py +134 -0
  22. tausurv-0.1.0/tausurv/copulas/clayton.py +68 -0
  23. tausurv-0.1.0/tausurv/copulas/frank.py +131 -0
  24. tausurv-0.1.0/tausurv/copulas/gumbel.py +115 -0
  25. tausurv-0.1.0/tausurv/copulas/independence.py +60 -0
  26. tausurv-0.1.0/tausurv/copulas/joe.py +141 -0
  27. tausurv-0.1.0/tausurv/core/__init__.py +26 -0
  28. tausurv-0.1.0/tausurv/datasets/__init__.py +394 -0
  29. tausurv-0.1.0/tausurv/datasets/_arff.py +88 -0
  30. tausurv-0.1.0/tausurv/datasets/_build.py +75 -0
  31. tausurv-0.1.0/tausurv/datasets/_bunch.py +103 -0
  32. tausurv-0.1.0/tausurv/datasets/_cache.py +148 -0
  33. tausurv-0.1.0/tausurv/datasets/_errors.py +92 -0
  34. tausurv-0.1.0/tausurv/datasets/_parsers.py +619 -0
  35. tausurv-0.1.0/tausurv/datasets/_parsers_bench.py +320 -0
  36. tausurv-0.1.0/tausurv/datasets/_parsers_r.py +596 -0
  37. tausurv-0.1.0/tausurv/datasets/_registry.py +765 -0
  38. tausurv-0.1.0/tausurv/datasets/_spec.py +138 -0
  39. tausurv-0.1.0/tausurv/datasets/_specs_bench.py +392 -0
  40. tausurv-0.1.0/tausurv/datasets/_specs_r.py +932 -0
  41. tausurv-0.1.0/tausurv/datasets/_specs_variants.py +220 -0
  42. tausurv-0.1.0/tausurv/discretization.py +88 -0
  43. tausurv-0.1.0/tausurv/distributions/__init__.py +22 -0
  44. tausurv-0.1.0/tausurv/distributions/base.py +63 -0
  45. tausurv-0.1.0/tausurv/distributions/exponential.py +44 -0
  46. tausurv-0.1.0/tausurv/distributions/gompertz.py +61 -0
  47. tausurv-0.1.0/tausurv/distributions/loglogistic.py +68 -0
  48. tausurv-0.1.0/tausurv/distributions/lognormal.py +57 -0
  49. tausurv-0.1.0/tausurv/distributions/weibull.py +62 -0
  50. tausurv-0.1.0/tausurv/linear/__init__.py +12 -0
  51. tausurv-0.1.0/tausurv/linear/_checkpoint.py +17 -0
  52. tausurv-0.1.0/tausurv/linear/aft.py +263 -0
  53. tausurv-0.1.0/tausurv/linear/cox_ph.py +267 -0
  54. tausurv-0.1.0/tausurv/linear/fine_gray.py +275 -0
  55. tausurv-0.1.0/tausurv/metrics/__init__.py +1 -0
  56. tausurv-0.1.0/tausurv/metrics/auc.py +340 -0
  57. tausurv-0.1.0/tausurv/metrics/brier.py +275 -0
  58. tausurv-0.1.0/tausurv/metrics/calibration.py +223 -0
  59. tausurv-0.1.0/tausurv/metrics/concordance.py +460 -0
  60. tausurv-0.1.0/tausurv/metrics/scoring.py +120 -0
  61. tausurv-0.1.0/tausurv/model_selection/__init__.py +30 -0
  62. tausurv-0.1.0/tausurv/model_selection/_cross_validate.py +200 -0
  63. tausurv-0.1.0/tausurv/model_selection/_fold.py +14 -0
  64. tausurv-0.1.0/tausurv/model_selection/_results.py +300 -0
  65. tausurv-0.1.0/tausurv/model_selection/_split.py +150 -0
  66. tausurv-0.1.0/tausurv/model_selection/_tune.py +307 -0
  67. tausurv-0.1.0/tausurv/model_selection/scoring.py +156 -0
  68. tausurv-0.1.0/tausurv/nn/__init__.py +45 -0
  69. tausurv-0.1.0/tausurv/nn/_utils.py +138 -0
  70. tausurv-0.1.0/tausurv/nn/checkpoint.py +66 -0
  71. tausurv-0.1.0/tausurv/nn/copulas/__init__.py +22 -0
  72. tausurv-0.1.0/tausurv/nn/copulas/base.py +83 -0
  73. tausurv-0.1.0/tausurv/nn/copulas/clayton.py +64 -0
  74. tausurv-0.1.0/tausurv/nn/copulas/frank.py +77 -0
  75. tausurv-0.1.0/tausurv/nn/copulas/gumbel.py +68 -0
  76. tausurv-0.1.0/tausurv/nn/copulas/independence.py +51 -0
  77. tausurv-0.1.0/tausurv/nn/copulas/joe.py +79 -0
  78. tausurv-0.1.0/tausurv/nn/distributions/__init__.py +22 -0
  79. tausurv-0.1.0/tausurv/nn/distributions/base.py +76 -0
  80. tausurv-0.1.0/tausurv/nn/distributions/exponential.py +39 -0
  81. tausurv-0.1.0/tausurv/nn/distributions/gompertz.py +51 -0
  82. tausurv-0.1.0/tausurv/nn/distributions/loglogistic.py +53 -0
  83. tausurv-0.1.0/tausurv/nn/distributions/lognormal.py +48 -0
  84. tausurv-0.1.0/tausurv/nn/distributions/weibull.py +50 -0
  85. tausurv-0.1.0/tausurv/nn/functional/__init__.py +7 -0
  86. tausurv-0.1.0/tausurv/nn/functional/copula_survival.py +66 -0
  87. tausurv-0.1.0/tausurv/nn/functional/cox.py +52 -0
  88. tausurv-0.1.0/tausurv/nn/functional/deephit.py +108 -0
  89. tausurv-0.1.0/tausurv/nn/functional/dsm.py +99 -0
  90. tausurv-0.1.0/tausurv/nn/functional/hacsurv.py +71 -0
  91. tausurv-0.1.0/tausurv/nn/functional/hazard.py +76 -0
  92. tausurv-0.1.0/tausurv/nn/functional/pmf.py +73 -0
  93. tausurv-0.1.0/tausurv/nn/losses/__init__.py +7 -0
  94. tausurv-0.1.0/tausurv/nn/losses/copula_survival.py +25 -0
  95. tausurv-0.1.0/tausurv/nn/losses/cox.py +30 -0
  96. tausurv-0.1.0/tausurv/nn/losses/deephit.py +84 -0
  97. tausurv-0.1.0/tausurv/nn/losses/dsm.py +46 -0
  98. tausurv-0.1.0/tausurv/nn/losses/hacsurv.py +25 -0
  99. tausurv-0.1.0/tausurv/nn/losses/hazard.py +31 -0
  100. tausurv-0.1.0/tausurv/nn/losses/pmf.py +31 -0
  101. tausurv-0.1.0/tausurv/nn/models/__init__.py +15 -0
  102. tausurv-0.1.0/tausurv/nn/models/copula_survival.py +379 -0
  103. tausurv-0.1.0/tausurv/nn/models/deephit.py +258 -0
  104. tausurv-0.1.0/tausurv/nn/models/deepsurv.py +269 -0
  105. tausurv-0.1.0/tausurv/nn/models/dsm.py +270 -0
  106. tausurv-0.1.0/tausurv/nn/models/hacsurv.py +544 -0
  107. tausurv-0.1.0/tausurv/nn/models/logistic_hazard.py +233 -0
  108. tausurv-0.1.0/tausurv/nn/modules/__init__.py +4 -0
  109. tausurv-0.1.0/tausurv/nn/modules/mlp.py +121 -0
  110. tausurv-0.1.0/tausurv/nn/modules/monotone.py +145 -0
  111. tausurv-0.1.0/tausurv/nn/training/__init__.py +7 -0
  112. tausurv-0.1.0/tausurv/nn/training/checkpoint.py +62 -0
  113. tausurv-0.1.0/tausurv/nn/training/fit.py +83 -0
  114. tausurv-0.1.0/tausurv/nn/training/logger.py +180 -0
  115. tausurv-0.1.0/tausurv/nn/training/metrics.py +24 -0
  116. tausurv-0.1.0/tausurv/nn/training/optimizer.py +62 -0
  117. tausurv-0.1.0/tausurv/nn/training/schedule.py +35 -0
  118. tausurv-0.1.0/tausurv/nn/training/trainer.py +630 -0
  119. tausurv-0.1.0/tausurv/nonparametric/__init__.py +15 -0
  120. tausurv-0.1.0/tausurv/nonparametric/aalen_johansen.py +155 -0
  121. tausurv-0.1.0/tausurv/nonparametric/censoring_distribution.py +33 -0
  122. tausurv-0.1.0/tausurv/nonparametric/kaplan_meier.py +55 -0
  123. tausurv-0.1.0/tausurv/nonparametric/nelson_aalen.py +57 -0
  124. tausurv-0.1.0/tausurv/plot/__init__.py +42 -0
  125. tausurv-0.1.0/tausurv/plot/_calibration.py +204 -0
  126. tausurv-0.1.0/tausurv/plot/_cif.py +287 -0
  127. tausurv-0.1.0/tausurv/plot/_forest.py +267 -0
  128. tausurv-0.1.0/tausurv/plot/_km.py +386 -0
  129. tausurv-0.1.0/tausurv/plot/_metric_over_time.py +425 -0
  130. tausurv-0.1.0/tausurv/plot/_predicted_survival.py +388 -0
  131. tausurv-0.1.0/tausurv/plot/_primitives.py +212 -0
  132. tausurv-0.1.0/tausurv/plot/_risk_strata.py +225 -0
  133. tausurv-0.1.0/tausurv/plot/_stacked_cif.py +183 -0
  134. tausurv-0.1.0/tausurv/plot/colors.py +135 -0
  135. tausurv-0.1.0/tausurv/plot/copula.py +379 -0
  136. tausurv-0.1.0/tausurv/plot/shap.py +666 -0
  137. tausurv-0.1.0/tausurv/plot/style.py +198 -0
  138. tausurv-0.1.0/tausurv/predictor.py +420 -0
  139. tausurv-0.1.0/tausurv/py.typed +0 -0
  140. tausurv-0.1.0/tausurv/simulations/__init__.py +3 -0
  141. tausurv-0.1.0/tausurv/simulations/_coefficients.py +9 -0
  142. tausurv-0.1.0/tausurv/simulations/competing_risks.py +63 -0
  143. tausurv-0.1.0/tausurv/simulations/single_risk.py +50 -0
  144. tausurv-0.1.0/tausurv/step.py +51 -0
  145. tausurv-0.1.0/tausurv/trees/__init__.py +3 -0
  146. tausurv-0.1.0/tausurv/trees/random_survival_forest.py +116 -0
  147. tausurv-0.1.0/tausurv/trees/survival_boost.py +391 -0
  148. tausurv-0.1.0/tausurv/trees/survival_tree.py +188 -0
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