tau-fibrils-yolo 0.0.4__tar.gz → 0.0.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. tau_fibrils_yolo-0.0.6/.github/workflows/release.yml +126 -0
  2. tau_fibrils_yolo-0.0.4/.github/workflows/release.yml → tau_fibrils_yolo-0.0.6/.github/workflows/release_multiplatform.yml +48 -6
  3. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/.gitignore +2 -0
  4. tau_fibrils_yolo-0.0.6/LICENSE +661 -0
  5. tau_fibrils_yolo-0.0.6/PKG-INFO +814 -0
  6. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/README.md +11 -5
  7. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/pyproject.toml +2 -1
  8. tau_fibrils_yolo-0.0.6/scripts/00_annotate.py +28 -0
  9. tau_fibrils_yolo-0.0.6/scripts/01_shapes_to_labels.py +33 -0
  10. tau_fibrils_yolo-0.0.6/scripts/02_split_train_valid.py +30 -0
  11. tau_fibrils_yolo-0.0.4/scripts/train.py → tau_fibrils_yolo-0.0.6/scripts/03_train_yolo.py +6 -4
  12. tau_fibrils_yolo-0.0.6/scripts/instructions.md +77 -0
  13. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/_version.py +2 -2
  14. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/_widget.py +84 -52
  15. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/cli.py +1 -1
  16. tau_fibrils_yolo-0.0.6/src/tau_fibrils_yolo/measure.py +91 -0
  17. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/postprocess.py +5 -4
  18. tau_fibrils_yolo-0.0.6/src/tau_fibrils_yolo.egg-info/PKG-INFO +814 -0
  19. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo.egg-info/SOURCES.txt +7 -2
  20. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo.egg-info/requires.txt +1 -0
  21. tau_fibrils_yolo-0.0.4/LICENSE +0 -28
  22. tau_fibrils_yolo-0.0.4/PKG-INFO +0 -173
  23. tau_fibrils_yolo-0.0.4/src/tau_fibrils_yolo/crossover_distance.py +0 -49
  24. tau_fibrils_yolo-0.0.4/src/tau_fibrils_yolo.egg-info/PKG-INFO +0 -173
  25. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/MANIFEST.in +0 -0
  26. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/assets/icon.png +0 -0
  27. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/assets/screenshot.png +0 -0
  28. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/setup.cfg +0 -0
  29. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/__init__.py +0 -0
  30. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/__main__.py +0 -0
  31. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/napari.yaml +0 -0
  32. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo/predict.py +0 -0
  33. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo.egg-info/dependency_links.txt +0 -0
  34. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo.egg-info/entry_points.txt +0 -0
  35. {tau_fibrils_yolo-0.0.4 → tau_fibrils_yolo-0.0.6}/src/tau_fibrils_yolo.egg-info/top_level.txt +0 -0
@@ -0,0 +1,126 @@
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+ # name: Publish, Build and Release
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+
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+ # on:
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+ # push:
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+ # branches:
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+ # - main
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+ # tags:
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+ # - "v*"
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+ # pull_request:
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+ # branches:
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+ # - main
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+ # workflow_dispatch:
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+
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+ # permissions:
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+ # contents: write
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+
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+ # jobs:
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+ # deploy:
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+ # runs-on: ubuntu-latest
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+ # if: contains(github.ref, 'tags')
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+ # steps:
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+ # - uses: actions/checkout@v4
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+ # - name: Set up Python
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+ # uses: actions/setup-python@v4
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+ # with:
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+ # python-version: "3.9"
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+ # - name: Install dependencies
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+ # run: |
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+ # python -m pip install --upgrade pip
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+ # pip install -U setuptools setuptools_scm wheel twine build
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+ # - name: Build and publish
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+ # env:
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+ # TWINE_USERNAME: __token__
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+ # TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }}
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+ # run: |
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+ # git tag
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+ # python -m build .
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+ # twine upload dist/*
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+
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+ # build:
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+ # needs: deploy
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+ # runs-on: ${{ matrix.os }}
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+ # strategy:
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+ # matrix:
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+ # os: [windows-latest]
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+
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+ # env:
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+ # PYAPP_PROJECT_NAME: 'tau_fibrils_yolo'
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+
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+ # steps:
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+ # - name: Checkout code
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+ # uses: actions/checkout@v2
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+
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+ # - name: Install Rust
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+ # uses: actions-rs/toolchain@v1
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+ # with:
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+ # toolchain: stable
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+ # override: true
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+
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+ # - name: Extract PyPi package version
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+ # shell: bash
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+ # run: |
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+ # VERSION=${{ github.ref_name }}
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+ # VERSION=${VERSION#v}
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+ # echo "VERSION=$VERSION" >> $GITHUB_ENV
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+
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+ # - name: Download PyApp
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+ # shell: bash
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+ # run: |
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+ # curl https://github.com/ofek/pyapp/releases/latest/download/source.tar.gz -Lo pyapp-source.tar.gz
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+ # tar -xzf pyapp-source.tar.gz
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+ # mv pyapp-v* pyapp-latest
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+
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+ # - name: Build executable for Windows
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+ # env:
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+ # PYAPP_PROJECT_VERSION: ${{ env.VERSION }}
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+ # PYAPP_PYTHON_VERSION: '3.9'
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+ # run: cargo build --release --manifest-path pyapp-latest/Cargo.toml
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+
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+ # - name: Archive Windows executable
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+ # shell: bash
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+ # working-directory: pyapp-latest/target/release
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+ # run: |
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+ # EXECUTABLE_NAME=${{ env.PYAPP_PROJECT_NAME }}_${{ runner.os }}_${{ env.VERSION }}.exe
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+ # mv pyapp.exe $EXECUTABLE_NAME
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+ # tar -czvf ../../../executable-windows.tar.gz $EXECUTABLE_NAME
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+
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+ # - name: Upload artifact
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+ # uses: actions/upload-artifact@v2
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+ # with:
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+ # name: executable-${{ runner.os }}
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+ # path: executable-*.tar.gz
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+
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+ # release:
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+ # needs: build
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+ # runs-on: ubuntu-latest
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+ # steps:
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+ # - name: Checkout code
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+ # uses: actions/checkout@v2
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+
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+ # - name: Download Windows artifact
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+ # uses: actions/download-artifact@v2
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+ # with:
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+ # name: executable-Windows
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+ # path: .
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+
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+ # - name: Create Release
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+ # id: create_release
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+ # uses: actions/create-release@v1
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+ # env:
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+ # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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+ # with:
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+ # tag_name: ${{ github.ref_name }}
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+ # release_name: Release ${{ github.ref_name }}
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+ # draft: false
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+ # prerelease: false
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+
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+ # - name: Upload Windows executable to release
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+ # uses: actions/upload-release-asset@v1
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+ # env:
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+ # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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+ # with:
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+ # upload_url: ${{ steps.create_release.outputs.upload_url }}
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+ # asset_path: ./executable-windows.tar.gz
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+ # asset_name: executable-windows.tar.gz
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+ # asset_content_type: application/gzip
@@ -42,7 +42,7 @@ jobs:
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  runs-on: ${{ matrix.os }}
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  strategy:
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  matrix:
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- os: [windows-latest]
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+ os: [windows-latest, ubuntu-latest, macos-latest]
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  env:
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  PYAPP_PROJECT_NAME: 'tau_fibrils_yolo'
@@ -71,19 +71,29 @@ jobs:
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  tar -xzf pyapp-source.tar.gz
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  mv pyapp-v* pyapp-latest
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- - name: Build executable for Windows
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+ - name: Build executable
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  env:
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  PYAPP_PROJECT_VERSION: ${{ env.VERSION }}
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  PYAPP_PYTHON_VERSION: '3.9'
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  run: cargo build --release --manifest-path pyapp-latest/Cargo.toml
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- - name: Archive Windows executable
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+ - name: Archive executable
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  shell: bash
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  working-directory: pyapp-latest/target/release
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  run: |
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- EXECUTABLE_NAME=${{ env.PYAPP_PROJECT_NAME }}_${{ runner.os }}_${{ env.VERSION }}.exe
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- mv pyapp.exe $EXECUTABLE_NAME
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- tar -czvf ../../../executable-windows.tar.gz $EXECUTABLE_NAME
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+ if [ "${{ matrix.os }}" == "windows-latest" ]; then
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+ EXECUTABLE_NAME=${{ env.PYAPP_PROJECT_NAME }}_${{ runner.os }}_${{ env.VERSION }}.exe
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+ mv pyapp.exe $EXECUTABLE_NAME
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+ tar -czvf ../../../executable-windows.tar.gz $EXECUTABLE_NAME
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+ elif [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
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+ EXECUTABLE_NAME=${{ env.PYAPP_PROJECT_NAME }}_${{ runner.os }}_${{ env.VERSION }}
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+ mv pyapp $EXECUTABLE_NAME
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+ tar -czvf ../../../executable-linux.tar.gz $EXECUTABLE_NAME
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+ elif [ "${{ matrix.os }}" == "macos-latest" ]; then
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+ EXECUTABLE_NAME=${{ env.PYAPP_PROJECT_NAME }}_${{ runner.os }}_${{ env.VERSION }}
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+ mv pyapp $EXECUTABLE_NAME
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+ tar -czvf ../../../executable-macos.tar.gz $EXECUTABLE_NAME
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+ fi
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  - name: Upload artifact
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  uses: actions/upload-artifact@v2
@@ -104,6 +114,18 @@ jobs:
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  name: executable-Windows
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  path: .
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+ - name: Download Linux artifact
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+ uses: actions/download-artifact@v2
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+ with:
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+ name: executable-Linux
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+ path: .
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+
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+ - name: Download MacOS artifact
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+ uses: actions/download-artifact@v2
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+ with:
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+ name: executable-macOS
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+ path: .
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+
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  - name: Create Release
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  id: create_release
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  uses: actions/create-release@v1
@@ -124,3 +146,23 @@ jobs:
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  asset_path: ./executable-windows.tar.gz
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  asset_name: executable-windows.tar.gz
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  asset_content_type: application/gzip
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+
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+ - name: Upload Linux executable to release
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+ uses: actions/upload-release-asset@v1
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+ env:
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+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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+ with:
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+ upload_url: ${{ steps.create_release.outputs.upload_url }}
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+ asset_path: ./executable-linux.tar.gz
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+ asset_name: executable-linux.tar.gz
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+ asset_content_type: application/gzip
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+
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+ - name: Upload MacOS executable to release
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+ uses: actions/upload-release-asset@v1
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+ env:
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+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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+ with:
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+ upload_url: ${{ steps.create_release.outputs.upload_url }}
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+ asset_path: ./executable-macos.tar.gz
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+ asset_name: executable-macos.tar.gz
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+ asset_content_type: application/gzip
@@ -167,3 +167,5 @@ trained_models/*.pt
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  notebooks/
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  _version.py
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+
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+ output/