tadc-sbm 0.1.5__tar.gz

tadc_sbm-0.1.5/LICENSE.md

@@ -0,0 +1,201 @@
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tadc_sbm-0.1.5/PKG-INFO

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+Metadata-Version: 2.4
+Name: tadc-sbm
+Version: 0.1.5
+Summary: A Time-varying, Attributed, Degree-Corrected Stochastic Block Model
+Author-email: Nelson Aloysio Reis de Almeida Passos <nelson.reis@phd.unipi.it>
+Project-URL: Homepage, https://pypi.org/p/tadc-sbm/
+Project-URL: Repository, https://github.com/nelsonaloysio/tadc-sbm
+Project-URL: Issues, https://github.com/nelsonaloysio/tadc-sbm/issues
+Keywords: Temporal Network,Attributed Graph,Graph Generative Model,Graph Sampling
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Information Technology
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Requires-Python: >=3.7
+Description-Content-Type: text/markdown
+License-File: LICENSE.md
+Requires-Dist: matplotlib>=3.10.1
+Requires-Dist: networkx>=3.4.2
+Requires-Dist: networkx-temporal>=1.2.1
+Requires-Dist: numpy==1.26.4
+Requires-Dist: pandas==2.2.3
+Dynamic: license-file
+
+# TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model
+
+[![Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/nelsonaloysio/tadcsbm/blob/main/notebook.ipynb)
+[![License](https://img.shields.io/github/license/nelsonaloysio/tadcsbm)](https://github.com/nelsonaloysio/tadcsbm/blob/main/LICENSE)
+[![PDF](https://img.shields.io/badge/pdf-Paper-red)](https://nelsonaloysio.github.io/files/tadcsbm2025.pdf)
+[![DOI](https://img.shields.io/badge/doi-10.1109/ISCC65549.2025.11326334-blue)](https://doi.org/10.1109/ISCC65549.2025.11326334)
+
+This is the code repository for the accompanying paper:
+
+> Passos, N.A.R.A., Carlini, E., Trani, S. (2025). [TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model](https://ieeexplore.ieee.org/document/11326334). 2025 IEEE Symposium on Computers and Communications (ISCC), Bologna, Italy, 2025, pp. 1-6.
+
+___
+
+## About
+
+TADC-SBM is a synthetic dataset generator based on [Ghasemian et al. (2016)](http://dx.doi.org/10.1103/PhysRevX.6.031005) and [Tsitsulin et al. (2021)](https://doi.org/10.48550/arXiv.2204.01376) that produces temporal graphs with varying community structures, attribute features, and mesoscale dynamics, suited for community detection and graph representation learning benchmarks under controlled experimental settings:
+
+[![figure](https://github.com/nelsonaloysio/tadc-sbm/raw/main/extra/figure.png)]()
+
+where $\mathbf{B}$ is the block matrix describing the probability of an edge being created among nodes in each community and $\boldsymbol{\tau}$ is the transition matrix with the probabilities of nodes switching communities over time.
+Node- and edge-level attribute features are drawn from a multivariate distribution considering the node communities in either the first or the last graph snapshot, optionally representing hierarchical (nested) structures in the feature space.
+
+## Requirements
+
+Requirements can be installed from [PyPI (requirements.txt)](requirements.txt) or using [conda (environment.yml)](environment.yml).
+
+> The [graph-tool](https://graph-tool.skewed.de/) library must be available in the user space: `conda install -c conda-forge graph-tool`.
+
+It is **not** advised to install the environment from conda as-is (but you certainly may!). Instead, try the following, more flexible environment to solve. Last tested with **Python 3.11** (but should work recent versions as well):
+
+```bash
+conda create -n tadcsbm -c conda-forge python=3.11 graph-tool  # tested with 2.96
+conda activate tadcsbm
+pip install -r requirements.txt
+```
+
+Alternatively, see the [graph-tool documentation](https://graph-tool.skewed.de) for other platforms and package managers, including Docker and Homebrew.
+
+### Installation
+
+The package is available on test PyPI as `tadcsbm` and can be installed with:
+
+```bash
+pip install --index-url https://test.pypi.org/simple/ tadcsbm
+```
+
+A binary script `tadc-sbm` is included for command line usage, which can be run with `python -m tadc-sbm` or simply `tadc-sbm` if the package is installed. Note that it is not necessary to install the package to run the script.
+
+## Usage
+
+To import the generator function in your code:
+
+```python
+from tadcsbm import tadcsbm_simulator
+sbm = tadcsbm_simulator(...)
+```
+
+An interactive example may be found in the included [notebook](notebook.ipynb) file.
+
+### Command line
+
+A command line interface is included to stremaline graph generation:
+
+```none
+usage: tadc-sbm.py [-h] -n NUM_VERTICES -e NUM_EDGES -k COMMUNITIES
+                   [-t SNAPSHOTS] [--eta ETA] [--gamma {0,1}]
+                   [--beta EDGE_SAMPLING_RATE] [--feature-dim FEATURE_DIM]
+                   [--feature-center-distance FEATURE_CENTER_DISTANCE]
+                   [--feature-cluster-variance FEATURE_CLUSTER_VARIANCE]
+                   [--feature-groups FEATURE_GROUPS]
+                   [--edge-feature-dim EDGE_FEATURE_DIM]
+                   [--edge-center-distance EDGE_CENTER_DISTANCE]
+                   [--edge-cluster-variance EDGE_CLUSTER_VARIANCE]
+                   [--no-reverse] [--uniform-all] [--dir OUTPUT_DIR]
+                   [--ext OUTPUT_EXT]
+
+options:
+  -h, --help            show this help message and exit
+  -n NUM_VERTICES, --num-vertices NUM_VERTICES
+                        Number of vertices (nodes)
+  -e NUM_EDGES, --num-edges NUM_EDGES
+                        Number of edges per snapshot
+  -k COMMUNITIES, --communities COMMUNITIES
+                        Number of communities
+  -t SNAPSHOTS, --snapshots SNAPSHOTS
+                        Number of snapshots
+  --eta ETA             Community stability factor (0.0 to 1.0)
+  --gamma {0,1}         Fix transition probabilities (default: 0 for current
+                        memberships)
+  --beta EDGE_SAMPLING_RATE
+                        Edge sampling rate (0.0 to 1.0)
+  --feature-dim FEATURE_DIM
+                        Dimensionality of node features
+  --feature-center-distance FEATURE_CENTER_DISTANCE
+                        Distance between feature clusters
+  --feature-cluster-variance FEATURE_CLUSTER_VARIANCE
+                        Variance of feature clusters (default: 1.0)
+  --feature-groups FEATURE_GROUPS
+                        Number of feature groups (default: k)
+  --edge-feature-dim EDGE_FEATURE_DIM
+                        Dimensionality of edge features
+  --edge-center-distance EDGE_CENTER_DISTANCE
+                        Distance between edge feature clusters
+  --edge-cluster-variance EDGE_CLUSTER_VARIANCE
+                        Variance of edge feature clusters (default: 1.0)
+  --fix-probabilities   Use fixed transition probabilities (default: False)
+  --no-reverse          Keep the generation order of snapshots (default:
+                        reversed)
+  --uniform-all         Uniform transition probabilities (i.e., including
+                        current community)
+```
+
+### Example
+
+To generate graphs with the same configuration used in the experimental evaluation of the paper:
+
+```none
+./tadc-sbm.py --communities 8 \
+              --snapshots 8 \
+              --num-vertices 1024 \
+              --num-edges 10240 \
+              --eta 1 \
+              --gamma 0 \
+              --feature-dim 32 \
+              --feature-center 6.0
+```
+
+See the included [examples](examples) directory for sample outputs used in the accompanying paper.
+
+> Varying the value of $\eta \in [0, 1]$ (`--eta`) produces snapshots with different community stability rates, while the value of $\gamma \in \\{0, 1\\}$ (`--gamma`) fixes the community transition probabilities for nodes in each snapshot.
+
+### Data conversion
+
+Resulting output is saved in compressed NetworkX-compatible and NumPy formats, and may be opened with a number of libraries and tools.
+See also: the [`convert`](https://networkx-temporal.readthedocs.io/en/stable/api/utils.html#networkx_temporal.utils.convert.convert) and [`read_graph`](https://networkx-temporal.readthedocs.io/en/stable/api/readwrite.html#networkx_temporal.readwrite.read_graph) functions from NetworkX-Temporal.
+
+## Acknowledgements
+
+Google Research for the [graph embedding simulations](https://github.com/google-research/google-research/tree/master/graph_embedding/simulations) that TADC-SBM is based on.
+
+## Cite
+
+In case this repository is useful for your research, kindly consider citing:
+
+```
+@inproceedings{tadcsbm2025,
+  author={Passos, Nelson A. R. A. and Carlini, Emanuele and Trani, Salvatore},
+  booktitle={2025 IEEE Symposium on Computers and Communications (ISCC)},
+  title={TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model},
+  year={2025},
+  volume={},
+  number={},
+  pages={1-6},
+  keywords={Representation learning;Systematics;Computational modeling;Perturbation methods;Stochastic processes;Transportation;Benchmark testing;Stability analysis;Recommender systems;Synthetic data;Temporal Graphs;Community Detection;Stochastic Block Modeling;Graph Representation Learning},
+  doi={10.1109/ISCC65549.2025.11326334}
+}
+```

tadc_sbm-0.1.5/README.md

@@ -0,0 +1,157 @@
+# TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model
+
+[![Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/nelsonaloysio/tadcsbm/blob/main/notebook.ipynb)
+[![License](https://img.shields.io/github/license/nelsonaloysio/tadcsbm)](https://github.com/nelsonaloysio/tadcsbm/blob/main/LICENSE)
+[![PDF](https://img.shields.io/badge/pdf-Paper-red)](https://nelsonaloysio.github.io/files/tadcsbm2025.pdf)
+[![DOI](https://img.shields.io/badge/doi-10.1109/ISCC65549.2025.11326334-blue)](https://doi.org/10.1109/ISCC65549.2025.11326334)
+
+This is the code repository for the accompanying paper:
+
+> Passos, N.A.R.A., Carlini, E., Trani, S. (2025). [TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model](https://ieeexplore.ieee.org/document/11326334). 2025 IEEE Symposium on Computers and Communications (ISCC), Bologna, Italy, 2025, pp. 1-6.
+
+___
+
+## About
+
+TADC-SBM is a synthetic dataset generator based on [Ghasemian et al. (2016)](http://dx.doi.org/10.1103/PhysRevX.6.031005) and [Tsitsulin et al. (2021)](https://doi.org/10.48550/arXiv.2204.01376) that produces temporal graphs with varying community structures, attribute features, and mesoscale dynamics, suited for community detection and graph representation learning benchmarks under controlled experimental settings:
+
+[![figure](https://github.com/nelsonaloysio/tadc-sbm/raw/main/extra/figure.png)]()
+
+where $\mathbf{B}$ is the block matrix describing the probability of an edge being created among nodes in each community and $\boldsymbol{\tau}$ is the transition matrix with the probabilities of nodes switching communities over time.
+Node- and edge-level attribute features are drawn from a multivariate distribution considering the node communities in either the first or the last graph snapshot, optionally representing hierarchical (nested) structures in the feature space.
+
+## Requirements
+
+Requirements can be installed from [PyPI (requirements.txt)](requirements.txt) or using [conda (environment.yml)](environment.yml).
+
+> The [graph-tool](https://graph-tool.skewed.de/) library must be available in the user space: `conda install -c conda-forge graph-tool`.
+
+It is **not** advised to install the environment from conda as-is (but you certainly may!). Instead, try the following, more flexible environment to solve. Last tested with **Python 3.11** (but should work recent versions as well):
+
+```bash
+conda create -n tadcsbm -c conda-forge python=3.11 graph-tool  # tested with 2.96
+conda activate tadcsbm
+pip install -r requirements.txt
+```
+
+Alternatively, see the [graph-tool documentation](https://graph-tool.skewed.de) for other platforms and package managers, including Docker and Homebrew.
+
+### Installation
+
+The package is available on test PyPI as `tadcsbm` and can be installed with:
+
+```bash
+pip install --index-url https://test.pypi.org/simple/ tadcsbm
+```
+
+A binary script `tadc-sbm` is included for command line usage, which can be run with `python -m tadc-sbm` or simply `tadc-sbm` if the package is installed. Note that it is not necessary to install the package to run the script.
+
+## Usage
+
+To import the generator function in your code:
+
+```python
+from tadcsbm import tadcsbm_simulator
+sbm = tadcsbm_simulator(...)
+```
+
+An interactive example may be found in the included [notebook](notebook.ipynb) file.
+
+### Command line
+
+A command line interface is included to stremaline graph generation:
+
+```none
+usage: tadc-sbm.py [-h] -n NUM_VERTICES -e NUM_EDGES -k COMMUNITIES
+                   [-t SNAPSHOTS] [--eta ETA] [--gamma {0,1}]
+                   [--beta EDGE_SAMPLING_RATE] [--feature-dim FEATURE_DIM]
+                   [--feature-center-distance FEATURE_CENTER_DISTANCE]
+                   [--feature-cluster-variance FEATURE_CLUSTER_VARIANCE]
+                   [--feature-groups FEATURE_GROUPS]
+                   [--edge-feature-dim EDGE_FEATURE_DIM]
+                   [--edge-center-distance EDGE_CENTER_DISTANCE]
+                   [--edge-cluster-variance EDGE_CLUSTER_VARIANCE]
+                   [--no-reverse] [--uniform-all] [--dir OUTPUT_DIR]
+                   [--ext OUTPUT_EXT]
+
+options:
+  -h, --help            show this help message and exit
+  -n NUM_VERTICES, --num-vertices NUM_VERTICES
+                        Number of vertices (nodes)
+  -e NUM_EDGES, --num-edges NUM_EDGES
+                        Number of edges per snapshot
+  -k COMMUNITIES, --communities COMMUNITIES
+                        Number of communities
+  -t SNAPSHOTS, --snapshots SNAPSHOTS
+                        Number of snapshots
+  --eta ETA             Community stability factor (0.0 to 1.0)
+  --gamma {0,1}         Fix transition probabilities (default: 0 for current
+                        memberships)
+  --beta EDGE_SAMPLING_RATE
+                        Edge sampling rate (0.0 to 1.0)
+  --feature-dim FEATURE_DIM
+                        Dimensionality of node features
+  --feature-center-distance FEATURE_CENTER_DISTANCE
+                        Distance between feature clusters
+  --feature-cluster-variance FEATURE_CLUSTER_VARIANCE
+                        Variance of feature clusters (default: 1.0)
+  --feature-groups FEATURE_GROUPS
+                        Number of feature groups (default: k)
+  --edge-feature-dim EDGE_FEATURE_DIM
+                        Dimensionality of edge features
+  --edge-center-distance EDGE_CENTER_DISTANCE
+                        Distance between edge feature clusters
+  --edge-cluster-variance EDGE_CLUSTER_VARIANCE
+                        Variance of edge feature clusters (default: 1.0)
+  --fix-probabilities   Use fixed transition probabilities (default: False)
+  --no-reverse          Keep the generation order of snapshots (default:
+                        reversed)
+  --uniform-all         Uniform transition probabilities (i.e., including
+                        current community)
+```
+
+### Example
+
+To generate graphs with the same configuration used in the experimental evaluation of the paper:
+
+```none
+./tadc-sbm.py --communities 8 \
+              --snapshots 8 \
+              --num-vertices 1024 \
+              --num-edges 10240 \
+              --eta 1 \
+              --gamma 0 \
+              --feature-dim 32 \
+              --feature-center 6.0
+```
+
+See the included [examples](examples) directory for sample outputs used in the accompanying paper.
+
+> Varying the value of $\eta \in [0, 1]$ (`--eta`) produces snapshots with different community stability rates, while the value of $\gamma \in \\{0, 1\\}$ (`--gamma`) fixes the community transition probabilities for nodes in each snapshot.
+
+### Data conversion
+
+Resulting output is saved in compressed NetworkX-compatible and NumPy formats, and may be opened with a number of libraries and tools.
+See also: the [`convert`](https://networkx-temporal.readthedocs.io/en/stable/api/utils.html#networkx_temporal.utils.convert.convert) and [`read_graph`](https://networkx-temporal.readthedocs.io/en/stable/api/readwrite.html#networkx_temporal.readwrite.read_graph) functions from NetworkX-Temporal.
+
+## Acknowledgements
+
+Google Research for the [graph embedding simulations](https://github.com/google-research/google-research/tree/master/graph_embedding/simulations) that TADC-SBM is based on.
+
+## Cite
+
+In case this repository is useful for your research, kindly consider citing:
+
+```
+@inproceedings{tadcsbm2025,
+  author={Passos, Nelson A. R. A. and Carlini, Emanuele and Trani, Salvatore},
+  booktitle={2025 IEEE Symposium on Computers and Communications (ISCC)},
+  title={TADC-SBM: a Time-varying, Attributed, Degree-Corrected Stochastic Block Model},
+  year={2025},
+  volume={},
+  number={},
+  pages={1-6},
+  keywords={Representation learning;Systematics;Computational modeling;Perturbation methods;Stochastic processes;Transportation;Benchmark testing;Stability analysis;Recommender systems;Synthetic data;Temporal Graphs;Community Detection;Stochastic Block Modeling;Graph Representation Learning},
+  doi={10.1109/ISCC65549.2025.11326334}
+}
+```

tadc_sbm-0.1.5/pyproject.toml

@@ -0,0 +1,46 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "tadc-sbm"
+version = "0.1.5"
+description = "A Time-varying, Attributed, Degree-Corrected Stochastic Block Model"
+requires-python = ">=3.7"
+readme = {file = "README.md", content-type = "text/markdown"}
+# license = "Apache Software License 2.0"
+# license-files = ["LICENSE.md"]
+keywords = ["Temporal Network", "Attributed Graph", "Graph Generative Model", "Graph Sampling"]
+authors = [
+    {name = "Nelson Aloysio Reis de Almeida Passos", email = "nelson.reis@phd.unipi.it"}
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Information Technology",
+    "License :: OSI Approved :: Apache Software License",
+    "Programming Language :: Python :: 3",
+    "Topic :: Scientific/Engineering :: Information Analysis",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+]
+dependencies = [
+    # "graph-tool=2.96",  # conda install -c conda-forge graph-tool
+    "matplotlib>=3.10.1",
+    "networkx>=3.4.2",
+    "networkx-temporal>=1.2.1",
+    "numpy==1.26.4",
+    "pandas==2.2.3",
+]
+
+[project.urls]
+Homepage = "https://pypi.org/p/tadc-sbm/"
+Repository = "https://github.com/nelsonaloysio/tadc-sbm"
+Issues = "https://github.com/nelsonaloysio/tadc-sbm/issues"
+
+[tool.setuptools.packages.find]
+where = ["."]
+include = ["tadcsbm*"]
+exclude = ["tadcsbm.tests*"]
+
+[project.scripts]
+tadc-sbm = "tadcsbm.main:main"

tadc_sbm-0.1.5/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

tadc_sbm-0.1.5/setup.py

@@ -0,0 +1,3 @@
+from setuptools import setup
+
+setup()